Gchil6868.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6868.t1
Unique NameGchil6868.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:468336..469025 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog59689.fgenesh2_kg.3__941__AT3G09250.1
PFAMsSnoaL_3,UVR
Max annot lvl35493|Streptophyta
Evalue8.45e-28
EggNOG OGs2CMBB@1|root,2QPVH@2759|Eukaryota,37PWJ@33090|Viridiplantae,3G71A@35493|Streptophyta,3HPVS@3699|Brassicales
DescriptionSnoaL-like domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6868Gchil6868Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 468336..469025 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6868.t1.stop1Gchil6868.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 468336..468338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6868.t1.CDS1Gchil6868.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 468336..469025 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6868.t1.exon1Gchil6868.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 468336..469025 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6868.t1.start1Gchil6868.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 469023..469025 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6868.t1Gchil6868.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 468336..469025 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6868.t1 ID=Gchil6868.t1|Name=Gchil6868.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=230bp
MSTAFTNSPPLRFQRSTRIGGVHPFGQNPNRLSRISLMRAASARCCVEQP
AWKRGPVDIDFQRDEQLQTLEEDLDDALQVEDYMKASEIRDKLLRLQSGA
YVAVLSANMKFYKAFSTGSIVGIASCWLQDPSVCCKHPSGPLAVGFLEVM
NSFGYIFSLGVPQIDVKDVCITMRGAVAYVTCGEYSTDWEDDEGRGCTVV
MNAINIFTKKNGEWYICHHSALPVTQFIE*
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spliced messenger RNA

>Gchil6868.t1 ID=Gchil6868.t1|Name=Gchil6868.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00004376_pilon:468336..469025- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGACAGCGTTTACCAATTCGCCACCGTTACGCTTCCAGCGTTCAAC
CCGAATTGGCGGCGTTCACCCATTCGGCCAGAATCCCAATCGTCTGTCTC
GAATATCTTTGATGCGTGCCGCAAGCGCCCGATGTTGCGTAGAGCAACCA
GCATGGAAGAGAGGTCCCGTTGACATCGACTTTCAGAGAGACGAACAGTT
GCAAACTTTAGAAGAAGATTTGGACGATGCCCTGCAAGTAGAAGATTATA
TGAAGGCATCTGAAATACGTGACAAATTGCTTCGGCTGCAGTCGGGAGCT
TATGTCGCTGTGCTTTCTGCGAATATGAAGTTCTACAAGGCGTTTTCTAC
TGGATCAATCGTTGGTATTGCTTCGTGTTGGTTACAGGATCCTTCAGTAT
GTTGTAAACATCCGTCCGGCCCTCTGGCGGTTGGTTTTTTAGAGGTAATG
AATAGTTTTGGGTATATCTTTTCTTTGGGTGTTCCTCAGATTGACGTGAA
GGATGTTTGTATTACTATGAGAGGTGCGGTGGCTTATGTCACATGTGGGG
AATATTCAACGGATTGGGAAGATGATGAAGGTCGTGGATGCACCGTCGTC
ATGAATGCGATAAACATATTTACCAAGAAAAACGGCGAATGGTACATCTG
TCATCATAGCGCATTGCCTGTCACTCAGTTCATAGAATAA
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protein sequence of Gchil6868.t1

>Gchil6868.t1 ID=Gchil6868.t1|Name=Gchil6868.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=230bp
MSTAFTNSPPLRFQRSTRIGGVHPFGQNPNRLSRISLMRAASARCCVEQP
AWKRGPVDIDFQRDEQLQTLEEDLDDALQVEDYMKASEIRDKLLRLQSGA
YVAVLSANMKFYKAFSTGSIVGIASCWLQDPSVCCKHPSGPLAVGFLEVM
NSFGYIFSLGVPQIDVKDVCITMRGAVAYVTCGEYSTDWEDDEGRGCTVV
MNAINIFTKKNGEWYICHHSALPVTQFIE*
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mRNA from alignment at tig00004376_pilon:468336..469025-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6868.t1 ID=Gchil6868.t1|Name=Gchil6868.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00004376_pilon:468336..469025- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGACAGCGTTTACCAATTCGCCACCGTTACGCTTCCAGCGTTCAAC
CCGAATTGGCGGCGTTCACCCATTCGGCCAGAATCCCAATCGTCTGTCTC
GAATATCTTTGATGCGTGCCGCAAGCGCCCGATGTTGCGTAGAGCAACCA
GCATGGAAGAGAGGTCCCGTTGACATCGACTTTCAGAGAGACGAACAGTT
GCAAACTTTAGAAGAAGATTTGGACGATGCCCTGCAAGTAGAAGATTATA
TGAAGGCATCTGAAATACGTGACAAATTGCTTCGGCTGCAGTCGGGAGCT
TATGTCGCTGTGCTTTCTGCGAATATGAAGTTCTACAAGGCGTTTTCTAC
TGGATCAATCGTTGGTATTGCTTCGTGTTGGTTACAGGATCCTTCAGTAT
GTTGTAAACATCCGTCCGGCCCTCTGGCGGTTGGTTTTTTAGAGGTAATG
AATAGTTTTGGGTATATCTTTTCTTTGGGTGTTCCTCAGATTGACGTGAA
GGATGTTTGTATTACTATGAGAGGTGCGGTGGCTTATGTCACATGTGGGG
AATATTCAACGGATTGGGAAGATGATGAAGGTCGTGGATGCACCGTCGTC
ATGAATGCGATAAACATATTTACCAAGAAAAACGGCGAATGGTACATCTG
TCATCATAGCGCATTGCCTGTCACTCAGTTCATAGAATAA
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Coding sequence (CDS) from alignment at tig00004376_pilon:468336..469025-

>Gchil6868.t1 ID=Gchil6868.t1|Name=Gchil6868.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=690bp|location=Sequence derived from alignment at tig00004376_pilon:468336..469025- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGACAGCGTTTACCAATTCGCCACCGTTACGCTTCCAGCGTTCAAC
CCGAATTGGCGGCGTTCACCCATTCGGCCAGAATCCCAATCGTCTGTCTC
GAATATCTTTGATGCGTGCCGCAAGCGCCCGATGTTGCGTAGAGCAACCA
GCATGGAAGAGAGGTCCCGTTGACATCGACTTTCAGAGAGACGAACAGTT
GCAAACTTTAGAAGAAGATTTGGACGATGCCCTGCAAGTAGAAGATTATA
TGAAGGCATCTGAAATACGTGACAAATTGCTTCGGCTGCAGTCGGGAGCT
TATGTCGCTGTGCTTTCTGCGAATATGAAGTTCTACAAGGCGTTTTCTAC
TGGATCAATCGTTGGTATTGCTTCGTGTTGGTTACAGGATCCTTCAGTAT
GTTGTAAACATCCGTCCGGCCCTCTGGCGGTTGGTTTTTTAGAGGTAATG
AATAGTTTTGGGTATATCTTTTCTTTGGGTGTTCCTCAGATTGACGTGAA
GGATGTTTGTATTACTATGAGAGGTGCGGTGGCTTATGTCACATGTGGGG
AATATTCAACGGATTGGGAAGATGATGAAGGTCGTGGATGCACCGTCGTC
ATGAATGCGATAAACATATTTACCAAGAAAAACGGCGAATGGTACATCTG
TCATCATAGCGCATTGCCTGTCACTCAGTTCATAGAATAA
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