Gchil6929.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6929.t1
Unique NameGchil6929.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length651
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:731914..733866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6929Gchil6929Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 731914..733866 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6929.t1.stop1Gchil6929.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 731914..731916 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6929.t1.CDS1Gchil6929.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 731914..733866 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6929.t1.exon1Gchil6929.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 731914..733866 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6929.t1.start1Gchil6929.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 733864..733866 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6929.t1Gchil6929.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 731914..733866 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6929.t1 ID=Gchil6929.t1|Name=Gchil6929.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=651bp
MRRIQVALIFAHSRHRFSLRPEKDEATFFELCKAVVRNLRLPVSPSRLAD
IDRSPLRIYYMQDEKVHSMASDDAMRKALKMDPHQLTLRMLYVDNTHQDR
SETKKPSSKARSHRSRSRSRSSARSARSARSARSRSASRASGREISPTRS
FSKDFLASPSSLLNIISHLRRHGTKGAKTAIEDLQESIIVNSCDAAKLDE
VQDKLARTFSVFLNRVAKLRTNTKVPEDLVEATLDHFERIGVEAEITSAT
IESASELLRVVSENEPDVHCIQEKWTDIVADKDEQNDDGDGDQSNSSSSS
SEPTSSRKAKKAKKDKKKKKKKQRRRRRRARMFVSAEVEPYVQELSILIS
AGNEEVKERFKRLKITALKNRSMLRARDSIDRHFCRSLEKCFFHAIRRHE
IPGEEQVNEHGCKSLATSVMKRLQNAGFDEKFARRASKLAIAMVQDPSVV
GQLHIYSMKGGADNDDEEVLGIEEEFGPEPSEEYNGMVRFNLDGSETSYE
SDRDDRIFEIRYSNKKLKKKREARRRSEDENLEFARARSRSRSRSRDDKE
HRRRRSRSRSRSRSHAHSRRSQDQFGFEAAEDRWGDIAGEEEEDERSDDT
SSLSDRTVDTSRSEWARIEMEKEFAARRRDHHSPSSGRRARHSSSSPRRR
*
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spliced messenger RNA

>Gchil6929.t1 ID=Gchil6929.t1|Name=Gchil6929.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1953bp|location=Sequence derived from alignment at tig00004376_pilon:731914..733866- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCGCATTCAGGTCGCGCTCATCTTCGCGCATTCTCGCCATCGCTT
CTCGCTTCGCCCGGAAAAGGACGAGGCGACTTTCTTTGAGTTATGCAAGG
CCGTCGTTCGCAACTTACGATTACCGGTGTCTCCTTCTCGGCTTGCTGAT
ATCGATCGTTCACCACTGCGCATTTACTACATGCAAGATGAAAAAGTTCA
TTCCATGGCCTCCGATGACGCCATGAGAAAAGCGCTCAAAATGGATCCCC
ATCAATTGACTTTGAGAATGTTGTACGTCGACAACACTCACCAAGACCGG
TCGGAGACTAAGAAGCCTTCGTCCAAAGCTCGCTCTCATCGGTCTCGTTC
GCGCTCTAGGTCTTCTGCTCGTTCTGCTCGTTCTGCTCGTTCTGCTCGAT
CACGCTCGGCGTCTCGTGCATCCGGAAGAGAAATTTCTCCCACACGTTCC
TTCTCAAAAGACTTCCTTGCCTCACCATCATCTTTGCTTAACATTATATC
TCACTTAAGGCGGCACGGAACAAAAGGAGCTAAGACTGCAATCGAAGATC
TTCAGGAATCCATTATTGTAAATTCATGTGATGCCGCTAAGCTAGACGAG
GTCCAAGACAAGCTGGCACGTACGTTTTCTGTCTTTCTCAATCGCGTTGC
TAAACTGCGTACAAACACAAAAGTGCCCGAAGATCTCGTGGAAGCTACCT
TGGACCATTTTGAACGTATTGGAGTGGAGGCTGAGATTACTAGTGCCACT
ATTGAATCTGCCAGTGAACTTCTTCGTGTAGTGTCTGAAAACGAACCCGA
TGTTCATTGTATACAAGAAAAGTGGACAGACATTGTTGCGGATAAGGACG
AACAAAATGATGATGGCGACGGAGACCAATCGAACTCTTCCTCTTCCTCT
TCCGAACCCACATCATCAAGAAAAGCCAAGAAGGCCAAGAAAGACAAGAA
AAAGAAGAAAAAGAAACAACGCCGTCGTCGGCGTCGTGCGAGAATGTTTG
TGTCAGCTGAAGTTGAACCATATGTTCAGGAGCTTTCCATCCTTATCAGC
GCTGGAAATGAAGAAGTTAAAGAAAGGTTTAAGCGTCTGAAGATTACCGC
TTTAAAGAATCGATCCATGCTGAGAGCTCGTGATTCAATAGACCGCCACT
TTTGTCGTTCGCTTGAAAAATGCTTCTTTCATGCCATAAGACGACACGAA
ATCCCGGGTGAGGAACAAGTTAACGAACATGGGTGCAAGTCTCTAGCGAC
AAGTGTCATGAAAAGACTACAAAATGCCGGCTTTGATGAAAAATTCGCCA
GAAGGGCTTCAAAGTTAGCGATTGCAATGGTACAAGACCCGTCTGTCGTG
GGACAACTTCATATATACTCTATGAAAGGCGGTGCGGACAATGACGATGA
AGAAGTTCTGGGAATTGAAGAGGAATTCGGCCCGGAACCTTCAGAAGAAT
ATAATGGAATGGTCCGGTTCAACCTCGATGGTTCAGAAACTTCGTATGAA
TCGGATCGTGATGACCGTATTTTCGAGATAAGATATTCAAACAAGAAACT
GAAAAAAAAGCGCGAAGCGAGACGCAGAAGTGAAGATGAAAACCTCGAGT
TTGCACGCGCAAGAAGTCGCAGTCGAAGTCGCTCACGAGACGATAAAGAA
CATAGGCGCAGACGGAGTCGCAGCCGCAGCCGCAGCCGCAGTCACGCTCA
TAGTCGGCGATCACAAGACCAGTTCGGATTTGAGGCCGCCGAAGATCGAT
GGGGTGACATAGCCGGGGAAGAGGAAGAGGATGAAAGATCGGATGACACC
AGCAGTTTAAGTGATAGAACTGTCGATACTTCTAGGAGCGAGTGGGCAAG
AATTGAAATGGAGAAAGAGTTTGCTGCACGGAGACGCGATCATCATTCAC
CCTCAAGCGGAAGACGGGCCAGGCACTCTTCGTCGAGCCCCAGGCGTAGG
TGA
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protein sequence of Gchil6929.t1

>Gchil6929.t1 ID=Gchil6929.t1|Name=Gchil6929.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=651bp
MRRIQVALIFAHSRHRFSLRPEKDEATFFELCKAVVRNLRLPVSPSRLAD
IDRSPLRIYYMQDEKVHSMASDDAMRKALKMDPHQLTLRMLYVDNTHQDR
SETKKPSSKARSHRSRSRSRSSARSARSARSARSRSASRASGREISPTRS
FSKDFLASPSSLLNIISHLRRHGTKGAKTAIEDLQESIIVNSCDAAKLDE
VQDKLARTFSVFLNRVAKLRTNTKVPEDLVEATLDHFERIGVEAEITSAT
IESASELLRVVSENEPDVHCIQEKWTDIVADKDEQNDDGDGDQSNSSSSS
SEPTSSRKAKKAKKDKKKKKKKQRRRRRRARMFVSAEVEPYVQELSILIS
AGNEEVKERFKRLKITALKNRSMLRARDSIDRHFCRSLEKCFFHAIRRHE
IPGEEQVNEHGCKSLATSVMKRLQNAGFDEKFARRASKLAIAMVQDPSVV
GQLHIYSMKGGADNDDEEVLGIEEEFGPEPSEEYNGMVRFNLDGSETSYE
SDRDDRIFEIRYSNKKLKKKREARRRSEDENLEFARARSRSRSRSRDDKE
HRRRRSRSRSRSRSHAHSRRSQDQFGFEAAEDRWGDIAGEEEEDERSDDT
SSLSDRTVDTSRSEWARIEMEKEFAARRRDHHSPSSGRRARHSSSSPRRR
*
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mRNA from alignment at tig00004376_pilon:731914..733866-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6929.t1 ID=Gchil6929.t1|Name=Gchil6929.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1953bp|location=Sequence derived from alignment at tig00004376_pilon:731914..733866- (Gracilaria chilensis NLEC103_M9 male)
ATGCGGCGCATTCAGGTCGCGCTCATCTTCGCGCATTCTCGCCATCGCTT
CTCGCTTCGCCCGGAAAAGGACGAGGCGACTTTCTTTGAGTTATGCAAGG
CCGTCGTTCGCAACTTACGATTACCGGTGTCTCCTTCTCGGCTTGCTGAT
ATCGATCGTTCACCACTGCGCATTTACTACATGCAAGATGAAAAAGTTCA
TTCCATGGCCTCCGATGACGCCATGAGAAAAGCGCTCAAAATGGATCCCC
ATCAATTGACTTTGAGAATGTTGTACGTCGACAACACTCACCAAGACCGG
TCGGAGACTAAGAAGCCTTCGTCCAAAGCTCGCTCTCATCGGTCTCGTTC
GCGCTCTAGGTCTTCTGCTCGTTCTGCTCGTTCTGCTCGTTCTGCTCGAT
CACGCTCGGCGTCTCGTGCATCCGGAAGAGAAATTTCTCCCACACGTTCC
TTCTCAAAAGACTTCCTTGCCTCACCATCATCTTTGCTTAACATTATATC
TCACTTAAGGCGGCACGGAACAAAAGGAGCTAAGACTGCAATCGAAGATC
TTCAGGAATCCATTATTGTAAATTCATGTGATGCCGCTAAGCTAGACGAG
GTCCAAGACAAGCTGGCACGTACGTTTTCTGTCTTTCTCAATCGCGTTGC
TAAACTGCGTACAAACACAAAAGTGCCCGAAGATCTCGTGGAAGCTACCT
TGGACCATTTTGAACGTATTGGAGTGGAGGCTGAGATTACTAGTGCCACT
ATTGAATCTGCCAGTGAACTTCTTCGTGTAGTGTCTGAAAACGAACCCGA
TGTTCATTGTATACAAGAAAAGTGGACAGACATTGTTGCGGATAAGGACG
AACAAAATGATGATGGCGACGGAGACCAATCGAACTCTTCCTCTTCCTCT
TCCGAACCCACATCATCAAGAAAAGCCAAGAAGGCCAAGAAAGACAAGAA
AAAGAAGAAAAAGAAACAACGCCGTCGTCGGCGTCGTGCGAGAATGTTTG
TGTCAGCTGAAGTTGAACCATATGTTCAGGAGCTTTCCATCCTTATCAGC
GCTGGAAATGAAGAAGTTAAAGAAAGGTTTAAGCGTCTGAAGATTACCGC
TTTAAAGAATCGATCCATGCTGAGAGCTCGTGATTCAATAGACCGCCACT
TTTGTCGTTCGCTTGAAAAATGCTTCTTTCATGCCATAAGACGACACGAA
ATCCCGGGTGAGGAACAAGTTAACGAACATGGGTGCAAGTCTCTAGCGAC
AAGTGTCATGAAAAGACTACAAAATGCCGGCTTTGATGAAAAATTCGCCA
GAAGGGCTTCAAAGTTAGCGATTGCAATGGTACAAGACCCGTCTGTCGTG
GGACAACTTCATATATACTCTATGAAAGGCGGTGCGGACAATGACGATGA
AGAAGTTCTGGGAATTGAAGAGGAATTCGGCCCGGAACCTTCAGAAGAAT
ATAATGGAATGGTCCGGTTCAACCTCGATGGTTCAGAAACTTCGTATGAA
TCGGATCGTGATGACCGTATTTTCGAGATAAGATATTCAAACAAGAAACT
GAAAAAAAAGCGCGAAGCGAGACGCAGAAGTGAAGATGAAAACCTCGAGT
TTGCACGCGCAAGAAGTCGCAGTCGAAGTCGCTCACGAGACGATAAAGAA
CATAGGCGCAGACGGAGTCGCAGCCGCAGCCGCAGCCGCAGTCACGCTCA
TAGTCGGCGATCACAAGACCAGTTCGGATTTGAGGCCGCCGAAGATCGAT
GGGGTGACATAGCCGGGGAAGAGGAAGAGGATGAAAGATCGGATGACACC
AGCAGTTTAAGTGATAGAACTGTCGATACTTCTAGGAGCGAGTGGGCAAG
AATTGAAATGGAGAAAGAGTTTGCTGCACGGAGACGCGATCATCATTCAC
CCTCAAGCGGAAGACGGGCCAGGCACTCTTCGTCGAGCCCCAGGCGTAGG
TGA
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Coding sequence (CDS) from alignment at tig00004376_pilon:731914..733866-

>Gchil6929.t1 ID=Gchil6929.t1|Name=Gchil6929.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1953bp|location=Sequence derived from alignment at tig00004376_pilon:731914..733866- (Gracilaria chilensis NLEC103_M9 male)
ATGCGGCGCATTCAGGTCGCGCTCATCTTCGCGCATTCTCGCCATCGCTT
CTCGCTTCGCCCGGAAAAGGACGAGGCGACTTTCTTTGAGTTATGCAAGG
CCGTCGTTCGCAACTTACGATTACCGGTGTCTCCTTCTCGGCTTGCTGAT
ATCGATCGTTCACCACTGCGCATTTACTACATGCAAGATGAAAAAGTTCA
TTCCATGGCCTCCGATGACGCCATGAGAAAAGCGCTCAAAATGGATCCCC
ATCAATTGACTTTGAGAATGTTGTACGTCGACAACACTCACCAAGACCGG
TCGGAGACTAAGAAGCCTTCGTCCAAAGCTCGCTCTCATCGGTCTCGTTC
GCGCTCTAGGTCTTCTGCTCGTTCTGCTCGTTCTGCTCGTTCTGCTCGAT
CACGCTCGGCGTCTCGTGCATCCGGAAGAGAAATTTCTCCCACACGTTCC
TTCTCAAAAGACTTCCTTGCCTCACCATCATCTTTGCTTAACATTATATC
TCACTTAAGGCGGCACGGAACAAAAGGAGCTAAGACTGCAATCGAAGATC
TTCAGGAATCCATTATTGTAAATTCATGTGATGCCGCTAAGCTAGACGAG
GTCCAAGACAAGCTGGCACGTACGTTTTCTGTCTTTCTCAATCGCGTTGC
TAAACTGCGTACAAACACAAAAGTGCCCGAAGATCTCGTGGAAGCTACCT
TGGACCATTTTGAACGTATTGGAGTGGAGGCTGAGATTACTAGTGCCACT
ATTGAATCTGCCAGTGAACTTCTTCGTGTAGTGTCTGAAAACGAACCCGA
TGTTCATTGTATACAAGAAAAGTGGACAGACATTGTTGCGGATAAGGACG
AACAAAATGATGATGGCGACGGAGACCAATCGAACTCTTCCTCTTCCTCT
TCCGAACCCACATCATCAAGAAAAGCCAAGAAGGCCAAGAAAGACAAGAA
AAAGAAGAAAAAGAAACAACGCCGTCGTCGGCGTCGTGCGAGAATGTTTG
TGTCAGCTGAAGTTGAACCATATGTTCAGGAGCTTTCCATCCTTATCAGC
GCTGGAAATGAAGAAGTTAAAGAAAGGTTTAAGCGTCTGAAGATTACCGC
TTTAAAGAATCGATCCATGCTGAGAGCTCGTGATTCAATAGACCGCCACT
TTTGTCGTTCGCTTGAAAAATGCTTCTTTCATGCCATAAGACGACACGAA
ATCCCGGGTGAGGAACAAGTTAACGAACATGGGTGCAAGTCTCTAGCGAC
AAGTGTCATGAAAAGACTACAAAATGCCGGCTTTGATGAAAAATTCGCCA
GAAGGGCTTCAAAGTTAGCGATTGCAATGGTACAAGACCCGTCTGTCGTG
GGACAACTTCATATATACTCTATGAAAGGCGGTGCGGACAATGACGATGA
AGAAGTTCTGGGAATTGAAGAGGAATTCGGCCCGGAACCTTCAGAAGAAT
ATAATGGAATGGTCCGGTTCAACCTCGATGGTTCAGAAACTTCGTATGAA
TCGGATCGTGATGACCGTATTTTCGAGATAAGATATTCAAACAAGAAACT
GAAAAAAAAGCGCGAAGCGAGACGCAGAAGTGAAGATGAAAACCTCGAGT
TTGCACGCGCAAGAAGTCGCAGTCGAAGTCGCTCACGAGACGATAAAGAA
CATAGGCGCAGACGGAGTCGCAGCCGCAGCCGCAGCCGCAGTCACGCTCA
TAGTCGGCGATCACAAGACCAGTTCGGATTTGAGGCCGCCGAAGATCGAT
GGGGTGACATAGCCGGGGAAGAGGAAGAGGATGAAAGATCGGATGACACC
AGCAGTTTAAGTGATAGAACTGTCGATACTTCTAGGAGCGAGTGGGCAAG
AATTGAAATGGAGAAAGAGTTTGCTGCACGGAGACGCGATCATCATTCAC
CCTCAAGCGGAAGACGGGCCAGGCACTCTTCGTCGAGCCCCAGGCGTAGG
TGA
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