Gchil6875.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6875.t1
Unique Name	Gchil6875.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	821

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004376_pilon	contig	tig00004376_pilon:563137..565599 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705591.1
PFAMs	PHM7_cyt,RSN1_7TM,RSN1_TM
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K21989
Evalue	5.61e-58
EggNOG OGs	COG5594@1\|root,KOG1134@2759\|Eukaryota
Description	ion transport
COG category	I
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6875	Gchil6875	Gracilaria chilensis NLEC103_M9 male	gene	tig00004376_pilon 563137..565599 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6875.t1.start1	Gchil6875.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004376_pilon 563137..563139 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6875.t1.CDS1	Gchil6875.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004376_pilon 563137..565599 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6875.t1.exon1	Gchil6875.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004376_pilon 563137..565599 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6875.t1.stop1	Gchil6875.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004376_pilon 565597..565599 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6875.t1	Gchil6875.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004376_pilon 563137..565599 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004376_pilon:563137..565599+
coding sequence from alignment at tig00004376_pilon:563137..565599+

mRNA sequence

>Gchil6875.t1 ID=Gchil6875.t1|Name=Gchil6875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=821bp
MVSSIDSGLLALVWVIGLGALTTSLVLILFDYLRPRIPQLYDRRRRVLPR
DRLGFALDDGRHQAPPPPSFRPFSWIAHVLSIPDESLKYTHGLDTHMLLK
FYKSCAWFCAHIGFFTTFILIPIYGTASKKNLPPDNPWRVFGIRIVSLSN
VPRSDSWRLMLVLIFDFFITVYVLVFIATQINYLVRMRREYRTSDHPSNY
ALIVQDIPVNFTTSDMLYDFFDSLFPGAVKSIKFIPVCSKLSKHRREYWT
AVRNRQRCDAILQRTASSTPSVLDKYIPAALLQRHSDLSQKKHTSEPSTN
SPVSKDSTGPSSSTPEYPVPNMNQTLTEITTDTGLLRFDSLTKVLNHSAR
AIQRRMLHEPEKSLRYWSGKEQKLLNKIEAERRRTEVFDSCSSTRAAVVT
FRRKNEASMAAQVCFSSSHFKWFLSPAPDIHAMNWDAFGISVRTVLVRKL
SAVLLTTALIIFWVIPTALIQTLANIEALSKTHAFAWLGFVNNLTPEFSG
FLQGLLPALVLELVMIVVPKIIRWIVMIQRIPSQVEIEKQVLQNLIAFLF
FSHLIYIVLSGSLLEYSNEIIRNPSTIVRILGTTIPQQGTFMMNVILLAT
LVQTPLEVLQIPRLIRRWFGLKRAWTTRDREIVDASGSLADHFLTYAYGT
IFLVLALVYSTLAPVMIIICAFFFIFSYIVMKYSLVYTFTKPWEGFAALH
HIVLQGITIGLLVKQITMGGYMSLMGQATLATLEFVVAAVTIVIVVVYRR
KVAPILEHVALEDLAVPQTVAATATRDVSKKLSSGSNAGSSDEVAAEMYV
HPCFSPVKQFDNEKADASNV*

spliced messenger RNA

>Gchil6875.t1 ID=Gchil6875.t1|Name=Gchil6875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2463bp|location=Sequence derived from alignment at tig00004376_pilon:563137..565599+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTATCCTCCATCGATTCCGGACTGTTGGCACTTGTCTGGGTCATTGG
ACTTGGTGCTCTGACCACTTCTCTTGTGCTTATTCTTTTCGACTACCTGC
GCCCGCGCATTCCGCAGTTGTACGATCGCCGACGCCGCGTGTTGCCGCGC
GACCGTCTGGGCTTTGCCTTGGATGATGGCAGACATCAAGCCCCACCTCC
GCCATCCTTCCGCCCTTTTTCTTGGATTGCCCACGTTCTCTCCATCCCGG
ACGAGTCCCTCAAGTACACCCATGGACTTGACACCCACATGTTGCTCAAG
TTTTATAAATCTTGCGCTTGGTTTTGTGCGCATATAGGCTTTTTCACTAC
CTTTATTCTCATCCCTATTTATGGAACTGCTTCCAAAAAGAATCTTCCTC
CAGATAATCCGTGGCGTGTGTTTGGTATTCGCATCGTCTCCCTATCCAAT
GTTCCGAGAAGTGACTCGTGGAGATTGATGTTGGTCCTTATATTTGATTT
CTTTATCACTGTGTATGTCTTGGTGTTTATTGCTACTCAAATTAATTATC
TCGTTCGAATGCGACGTGAATATCGAACCAGCGATCATCCGTCCAACTAT
GCCTTGATTGTTCAGGACATTCCTGTTAACTTCACTACATCTGACATGCT
CTATGACTTTTTTGACTCCTTATTTCCGGGTGCTGTCAAATCCATCAAGT
TCATACCTGTGTGCTCGAAACTCTCAAAGCATCGTCGTGAGTACTGGACT
GCTGTTCGAAACCGACAACGATGTGATGCTATCCTTCAACGCACTGCCTC
TTCAACTCCGTCCGTGCTGGACAAGTATATTCCAGCCGCTCTGCTGCAGA
GGCACTCCGACCTTTCGCAAAAAAAACACACGTCGGAGCCGTCTACCAAC
TCGCCAGTCTCTAAGGATTCCACGGGGCCTTCTTCTAGCACCCCTGAATA
TCCCGTTCCAAACATGAATCAGACTCTGACTGAAATCACTACCGACACTG
GTTTGCTTCGTTTTGACTCGCTTACCAAAGTGCTCAACCACTCAGCTCGG
GCAATTCAGAGAAGAATGCTGCATGAACCAGAAAAGTCCTTGCGATATTG
GTCCGGCAAGGAACAAAAGCTATTGAACAAAATTGAAGCGGAGCGTCGTC
GCACAGAGGTTTTTGACTCTTGTAGCTCCACTCGCGCGGCCGTAGTCACC
TTTCGGAGAAAGAATGAGGCTTCAATGGCGGCGCAGGTCTGTTTTTCTTC
CTCGCACTTCAAATGGTTTCTGTCGCCGGCCCCGGATATTCATGCCATGA
ACTGGGATGCTTTCGGCATTTCAGTTCGCACCGTACTTGTGCGCAAGCTG
TCCGCCGTGTTGCTCACGACAGCTCTCATTATCTTTTGGGTTATTCCTAC
GGCGTTGATTCAGACTTTGGCCAACATCGAAGCGCTCAGCAAGACACATG
CGTTTGCATGGTTGGGCTTTGTCAACAATCTTACTCCAGAGTTTTCGGGT
TTCCTCCAGGGTCTTCTCCCCGCACTGGTGTTGGAATTGGTCATGATTGT
AGTCCCGAAGATTATTCGATGGATCGTCATGATTCAACGTATTCCGTCCC
AAGTCGAAATCGAAAAACAAGTCTTGCAAAACTTGATTGCGTTCTTGTTC
TTTTCTCATCTTATCTACATTGTTCTGTCAGGGTCTCTTCTTGAATACTC
CAACGAAATCATTCGAAATCCATCGACGATTGTTCGAATTCTTGGTACCA
CCATTCCGCAACAGGGAACGTTCATGATGAATGTAATCCTGTTGGCAACA
TTGGTGCAGACGCCTCTAGAGGTTTTGCAAATCCCTCGTCTGATCCGGAG
ATGGTTTGGGTTGAAGCGTGCCTGGACGACCAGAGATCGTGAAATTGTGG
ATGCTAGCGGTTCTTTGGCTGACCACTTCCTTACGTATGCGTATGGGACG
ATTTTCCTTGTGCTAGCACTCGTGTACTCAACACTTGCCCCCGTTATGat
catcatctgcgccttcttcttcatcttcagttacatcgtcatGAAGTACA
GCCTCGTGTATACTTTTACCAAGCCGTGGGAAGGGTTTGCCGCTCTTCAT
CACATTGTCTTGCAGGGAATCACAATCGGGCTTTTGGTTAAACAGATCAC
TATGGGCGGCTACATGAGCCTCATGGGACAGGCCACTCTGGCCACGTTGG
AATTTGTTGTCGCTGCGGTCACGATTGTCATCGTGGTCGTGTACAGGAGG
AAAGTCGCACCTATCCTCGAGCATGTTGCGCTCGAAGATCTAGCTGTGCC
GCAAACAGTAGCAGCAACGGCAACGCGTGACGTGTCAAAGAAGCTTTCGT
CTGGTTCAAATGCAGGTTCATCGGATGAAGTTGCTGCCGAGATGTATGTG
CATCCTTGTTTCTCACCAGTGAAGCAATTTGACAACGAGAAGGCGGATGC
AAGCAACGTGTAG

protein sequence of Gchil6875.t1

>Gchil6875.t1 ID=Gchil6875.t1|Name=Gchil6875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=821bp
MVSSIDSGLLALVWVIGLGALTTSLVLILFDYLRPRIPQLYDRRRRVLPR
DRLGFALDDGRHQAPPPPSFRPFSWIAHVLSIPDESLKYTHGLDTHMLLK
FYKSCAWFCAHIGFFTTFILIPIYGTASKKNLPPDNPWRVFGIRIVSLSN
VPRSDSWRLMLVLIFDFFITVYVLVFIATQINYLVRMRREYRTSDHPSNY
ALIVQDIPVNFTTSDMLYDFFDSLFPGAVKSIKFIPVCSKLSKHRREYWT
AVRNRQRCDAILQRTASSTPSVLDKYIPAALLQRHSDLSQKKHTSEPSTN
SPVSKDSTGPSSSTPEYPVPNMNQTLTEITTDTGLLRFDSLTKVLNHSAR
AIQRRMLHEPEKSLRYWSGKEQKLLNKIEAERRRTEVFDSCSSTRAAVVT
FRRKNEASMAAQVCFSSSHFKWFLSPAPDIHAMNWDAFGISVRTVLVRKL
SAVLLTTALIIFWVIPTALIQTLANIEALSKTHAFAWLGFVNNLTPEFSG
FLQGLLPALVLELVMIVVPKIIRWIVMIQRIPSQVEIEKQVLQNLIAFLF
FSHLIYIVLSGSLLEYSNEIIRNPSTIVRILGTTIPQQGTFMMNVILLAT
LVQTPLEVLQIPRLIRRWFGLKRAWTTRDREIVDASGSLADHFLTYAYGT
IFLVLALVYSTLAPVMIIICAFFFIFSYIVMKYSLVYTFTKPWEGFAALH
HIVLQGITIGLLVKQITMGGYMSLMGQATLATLEFVVAAVTIVIVVVYRR
KVAPILEHVALEDLAVPQTVAATATRDVSKKLSSGSNAGSSDEVAAEMYV
HPCFSPVKQFDNEKADASNV*

mRNA from alignment at tig00004376_pilon:563137..565599+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6875.t1 ID=Gchil6875.t1|Name=Gchil6875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2463bp|location=Sequence derived from alignment at tig00004376_pilon:563137..565599+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTATCCTCCATCGATTCCGGACTGTTGGCACTTGTCTGGGTCATTGG
ACTTGGTGCTCTGACCACTTCTCTTGTGCTTATTCTTTTCGACTACCTGC
GCCCGCGCATTCCGCAGTTGTACGATCGCCGACGCCGCGTGTTGCCGCGC
GACCGTCTGGGCTTTGCCTTGGATGATGGCAGACATCAAGCCCCACCTCC
GCCATCCTTCCGCCCTTTTTCTTGGATTGCCCACGTTCTCTCCATCCCGG
ACGAGTCCCTCAAGTACACCCATGGACTTGACACCCACATGTTGCTCAAG
TTTTATAAATCTTGCGCTTGGTTTTGTGCGCATATAGGCTTTTTCACTAC
CTTTATTCTCATCCCTATTTATGGAACTGCTTCCAAAAAGAATCTTCCTC
CAGATAATCCGTGGCGTGTGTTTGGTATTCGCATCGTCTCCCTATCCAAT
GTTCCGAGAAGTGACTCGTGGAGATTGATGTTGGTCCTTATATTTGATTT
CTTTATCACTGTGTATGTCTTGGTGTTTATTGCTACTCAAATTAATTATC
TCGTTCGAATGCGACGTGAATATCGAACCAGCGATCATCCGTCCAACTAT
GCCTTGATTGTTCAGGACATTCCTGTTAACTTCACTACATCTGACATGCT
CTATGACTTTTTTGACTCCTTATTTCCGGGTGCTGTCAAATCCATCAAGT
TCATACCTGTGTGCTCGAAACTCTCAAAGCATCGTCGTGAGTACTGGACT
GCTGTTCGAAACCGACAACGATGTGATGCTATCCTTCAACGCACTGCCTC
TTCAACTCCGTCCGTGCTGGACAAGTATATTCCAGCCGCTCTGCTGCAGA
GGCACTCCGACCTTTCGCAAAAAAAACACACGTCGGAGCCGTCTACCAAC
TCGCCAGTCTCTAAGGATTCCACGGGGCCTTCTTCTAGCACCCCTGAATA
TCCCGTTCCAAACATGAATCAGACTCTGACTGAAATCACTACCGACACTG
GTTTGCTTCGTTTTGACTCGCTTACCAAAGTGCTCAACCACTCAGCTCGG
GCAATTCAGAGAAGAATGCTGCATGAACCAGAAAAGTCCTTGCGATATTG
GTCCGGCAAGGAACAAAAGCTATTGAACAAAATTGAAGCGGAGCGTCGTC
GCACAGAGGTTTTTGACTCTTGTAGCTCCACTCGCGCGGCCGTAGTCACC
TTTCGGAGAAAGAATGAGGCTTCAATGGCGGCGCAGGTCTGTTTTTCTTC
CTCGCACTTCAAATGGTTTCTGTCGCCGGCCCCGGATATTCATGCCATGA
ACTGGGATGCTTTCGGCATTTCAGTTCGCACCGTACTTGTGCGCAAGCTG
TCCGCCGTGTTGCTCACGACAGCTCTCATTATCTTTTGGGTTATTCCTAC
GGCGTTGATTCAGACTTTGGCCAACATCGAAGCGCTCAGCAAGACACATG
CGTTTGCATGGTTGGGCTTTGTCAACAATCTTACTCCAGAGTTTTCGGGT
TTCCTCCAGGGTCTTCTCCCCGCACTGGTGTTGGAATTGGTCATGATTGT
AGTCCCGAAGATTATTCGATGGATCGTCATGATTCAACGTATTCCGTCCC
AAGTCGAAATCGAAAAACAAGTCTTGCAAAACTTGATTGCGTTCTTGTTC
TTTTCTCATCTTATCTACATTGTTCTGTCAGGGTCTCTTCTTGAATACTC
CAACGAAATCATTCGAAATCCATCGACGATTGTTCGAATTCTTGGTACCA
CCATTCCGCAACAGGGAACGTTCATGATGAATGTAATCCTGTTGGCAACA
TTGGTGCAGACGCCTCTAGAGGTTTTGCAAATCCCTCGTCTGATCCGGAG
ATGGTTTGGGTTGAAGCGTGCCTGGACGACCAGAGATCGTGAAATTGTGG
ATGCTAGCGGTTCTTTGGCTGACCACTTCCTTACGTATGCGTATGGGACG
ATTTTCCTTGTGCTAGCACTCGTGTACTCAACACTTGCCCCCGTTATGat
catcatctgcgccttcttcttcatcttcagttacatcgtcatGAAGTACA
GCCTCGTGTATACTTTTACCAAGCCGTGGGAAGGGTTTGCCGCTCTTCAT
CACATTGTCTTGCAGGGAATCACAATCGGGCTTTTGGTTAAACAGATCAC
TATGGGCGGCTACATGAGCCTCATGGGACAGGCCACTCTGGCCACGTTGG
AATTTGTTGTCGCTGCGGTCACGATTGTCATCGTGGTCGTGTACAGGAGG
AAAGTCGCACCTATCCTCGAGCATGTTGCGCTCGAAGATCTAGCTGTGCC
GCAAACAGTAGCAGCAACGGCAACGCGTGACGTGTCAAAGAAGCTTTCGT
CTGGTTCAAATGCAGGTTCATCGGATGAAGTTGCTGCCGAGATGTATGTG
CATCCTTGTTTCTCACCAGTGAAGCAATTTGACAACGAGAAGGCGGATGC
AAGCAACGTGTAG

Coding sequence (CDS) from alignment at tig00004376_pilon:563137..565599+

>Gchil6875.t1 ID=Gchil6875.t1|Name=Gchil6875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2463bp|location=Sequence derived from alignment at tig00004376_pilon:563137..565599+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTATCCTCCATCGATTCCGGACTGTTGGCACTTGTCTGGGTCATTGG
ACTTGGTGCTCTGACCACTTCTCTTGTGCTTATTCTTTTCGACTACCTGC
GCCCGCGCATTCCGCAGTTGTACGATCGCCGACGCCGCGTGTTGCCGCGC
GACCGTCTGGGCTTTGCCTTGGATGATGGCAGACATCAAGCCCCACCTCC
GCCATCCTTCCGCCCTTTTTCTTGGATTGCCCACGTTCTCTCCATCCCGG
ACGAGTCCCTCAAGTACACCCATGGACTTGACACCCACATGTTGCTCAAG
TTTTATAAATCTTGCGCTTGGTTTTGTGCGCATATAGGCTTTTTCACTAC
CTTTATTCTCATCCCTATTTATGGAACTGCTTCCAAAAAGAATCTTCCTC
CAGATAATCCGTGGCGTGTGTTTGGTATTCGCATCGTCTCCCTATCCAAT
GTTCCGAGAAGTGACTCGTGGAGATTGATGTTGGTCCTTATATTTGATTT
CTTTATCACTGTGTATGTCTTGGTGTTTATTGCTACTCAAATTAATTATC
TCGTTCGAATGCGACGTGAATATCGAACCAGCGATCATCCGTCCAACTAT
GCCTTGATTGTTCAGGACATTCCTGTTAACTTCACTACATCTGACATGCT
CTATGACTTTTTTGACTCCTTATTTCCGGGTGCTGTCAAATCCATCAAGT
TCATACCTGTGTGCTCGAAACTCTCAAAGCATCGTCGTGAGTACTGGACT
GCTGTTCGAAACCGACAACGATGTGATGCTATCCTTCAACGCACTGCCTC
TTCAACTCCGTCCGTGCTGGACAAGTATATTCCAGCCGCTCTGCTGCAGA
GGCACTCCGACCTTTCGCAAAAAAAACACACGTCGGAGCCGTCTACCAAC
TCGCCAGTCTCTAAGGATTCCACGGGGCCTTCTTCTAGCACCCCTGAATA
TCCCGTTCCAAACATGAATCAGACTCTGACTGAAATCACTACCGACACTG
GTTTGCTTCGTTTTGACTCGCTTACCAAAGTGCTCAACCACTCAGCTCGG
GCAATTCAGAGAAGAATGCTGCATGAACCAGAAAAGTCCTTGCGATATTG
GTCCGGCAAGGAACAAAAGCTATTGAACAAAATTGAAGCGGAGCGTCGTC
GCACAGAGGTTTTTGACTCTTGTAGCTCCACTCGCGCGGCCGTAGTCACC
TTTCGGAGAAAGAATGAGGCTTCAATGGCGGCGCAGGTCTGTTTTTCTTC
CTCGCACTTCAAATGGTTTCTGTCGCCGGCCCCGGATATTCATGCCATGA
ACTGGGATGCTTTCGGCATTTCAGTTCGCACCGTACTTGTGCGCAAGCTG
TCCGCCGTGTTGCTCACGACAGCTCTCATTATCTTTTGGGTTATTCCTAC
GGCGTTGATTCAGACTTTGGCCAACATCGAAGCGCTCAGCAAGACACATG
CGTTTGCATGGTTGGGCTTTGTCAACAATCTTACTCCAGAGTTTTCGGGT
TTCCTCCAGGGTCTTCTCCCCGCACTGGTGTTGGAATTGGTCATGATTGT
AGTCCCGAAGATTATTCGATGGATCGTCATGATTCAACGTATTCCGTCCC
AAGTCGAAATCGAAAAACAAGTCTTGCAAAACTTGATTGCGTTCTTGTTC
TTTTCTCATCTTATCTACATTGTTCTGTCAGGGTCTCTTCTTGAATACTC
CAACGAAATCATTCGAAATCCATCGACGATTGTTCGAATTCTTGGTACCA
CCATTCCGCAACAGGGAACGTTCATGATGAATGTAATCCTGTTGGCAACA
TTGGTGCAGACGCCTCTAGAGGTTTTGCAAATCCCTCGTCTGATCCGGAG
ATGGTTTGGGTTGAAGCGTGCCTGGACGACCAGAGATCGTGAAATTGTGG
ATGCTAGCGGTTCTTTGGCTGACCACTTCCTTACGTATGCGTATGGGACG
ATTTTCCTTGTGCTAGCACTCGTGTACTCAACACTTGCCCCCGTTATGat
catcatctgcgccttcttcttcatcttcagttacatcgtcatGAAGTACA
GCCTCGTGTATACTTTTACCAAGCCGTGGGAAGGGTTTGCCGCTCTTCAT
CACATTGTCTTGCAGGGAATCACAATCGGGCTTTTGGTTAAACAGATCAC
TATGGGCGGCTACATGAGCCTCATGGGACAGGCCACTCTGGCCACGTTGG
AATTTGTTGTCGCTGCGGTCACGATTGTCATCGTGGTCGTGTACAGGAGG
AAAGTCGCACCTATCCTCGAGCATGTTGCGCTCGAAGATCTAGCTGTGCC
GCAAACAGTAGCAGCAACGGCAACGCGTGACGTGTCAAAGAAGCTTTCGT
CTGGTTCAAATGCAGGTTCATCGGATGAAGTTGCTGCCGAGATGTATGTG
CATCCTTGTTTCTCACCAGTGAAGCAATTTGACAACGAGAAGGCGGATGC
AAGCAACGTGTAG