Gchil6870.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6870.t1
Unique NameGchil6870.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length357
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:476121..477191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_008545-tr
PFAMsRVT_1,rve
Max annot lvl33208|Metazoa
Evalue4.77e-27
EggNOG OGsCOG2801@1|root,KOG1721@1|root,KOG0017@2759|Eukaryota,KOG1721@2759|Eukaryota,3AH2J@33154|Opisthokonta,3BX3Q@33208|Metazoa,3DFV7@33213|Bilateria
DescriptionDNA binding
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6870Gchil6870Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 476121..477191 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6870.t1.stop1Gchil6870.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 476121..476123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6870.t1.CDS1Gchil6870.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 476121..477191 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6870.t1.exon1Gchil6870.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 476121..477191 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6870.t1.start1Gchil6870.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 477189..477191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6870.t1Gchil6870.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 476121..477191 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6870.t1 ID=Gchil6870.t1|Name=Gchil6870.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=357bp
MDILMPLPNSSHGKRVVLVITDRFIKLTRALPVRKTTATDVATAFLSHCV
YPYGTLLYLLMDNGSQFVSKFFSQVCATLGIKYVTTTAYHPQTNDQAERF
KCTLLNRLAHYVSEHQLDWDHYIGPLVYAYNTQVHASTGTMPFHLTLARA
PPLIAVHVQESIIPQDITEGMNPTQAKRYSRRRIDRILQSTTTVLTKAQR
RYKCNFDEAVWNKLTFGRGDLVYLDRPPKDSEELEDTTRKLLPRSTGPYK
VLKANEHTITLLIDGLQDNVSIDRVKRAPSSSGPPKSQPLAQRKNHDLRS
TLKSPHPLREFPRSRLAPQTRWSVPTIMTHRSQPTPIDLPLWTTLSFHKM
NINQNM*
back to top

spliced messenger RNA

>Gchil6870.t1 ID=Gchil6870.t1|Name=Gchil6870.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1071bp|location=Sequence derived from alignment at tig00004376_pilon:476121..477191- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATATACTTATGCCTTTGCCTAACTCGTCCCATGGGAAACGGGTTGT
TTTGGTTATAACCGATAGATTTATAAAACTTACCCGAGCCCTACCCGTAA
GAAAGACAACGGCCACGGATGTCGCCACGGCCTTCTTGTCACACTGTGTA
TATCCATATGGAACGCTACTCTACCTCCTTATGGATAATGGAAGCCAGTT
TGTTTCCAAATTCTTCTCACAAGTTTGTGCTACCTTAGGAATCAAATATG
TGACCACCACCGCGTACCACCCGCAAACCAATGACCAAGCCGAACGTTTC
AAATGCACCCTTCTGAACCGATTGGCGCACTACGTTTCGGAGCACCAATT
GGACTGGGACCACTACATTGGGCCATTGGTTTATGCCTACAACACCCAGG
TGCACGCTTCCACAGGGACAATGCCTTTCCACTTAACGCTAGCGAGAGCG
CCGCCGCTGATAGCTGTTCACGTTCAGGAATCGATCATACCTCAGGACAT
AACCGAAGGAATGAATCCGACCCAGGCGAAGCGCTACTCGCGCCGACGCA
TTGACCGCATTCTCCAATCGACCACAACTGTACTAACCAAAGCCCAACGC
CGCTACAAGTGCAATTTCGACGAAGCCGTTTGGAACAAACTGACCTTTGG
GAGAGGAGACCTGGTTTACTTGGACCGGCCACCGAAGGACAGTGAGGAAC
TCGAGGACACTACGCGGAAGCTCTTACCCCGCTCTACGGGACCATACAAA
GTCCTTAAGGCAAATGAACACACCATCACGTTGCTCATTGATGGCCTACA
GGACAACGTGTCTATTGACCGCGTGAAACGAGCTCCCAGTTCCTCCGGAC
CACCAAAGTCCCAGCCCCTGGCCCAACGAAAGAACCACGACCTCAGGTCG
ACGCTCAAGTCTCCACACCCCCTAAGAGAGTTCCCGAGGAGTCGACTAGC
CCCACAGACCCGATGGTCAGTGCCAACTATTATGACCCATCGCTCCCAAC
CGACTCCGATTGATTTGCCCCTCTGGACCACACTCTCCTTCCACAAGATG
AACATCAACCAGAATATGTGA
back to top

protein sequence of Gchil6870.t1

>Gchil6870.t1 ID=Gchil6870.t1|Name=Gchil6870.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=357bp
MDILMPLPNSSHGKRVVLVITDRFIKLTRALPVRKTTATDVATAFLSHCV
YPYGTLLYLLMDNGSQFVSKFFSQVCATLGIKYVTTTAYHPQTNDQAERF
KCTLLNRLAHYVSEHQLDWDHYIGPLVYAYNTQVHASTGTMPFHLTLARA
PPLIAVHVQESIIPQDITEGMNPTQAKRYSRRRIDRILQSTTTVLTKAQR
RYKCNFDEAVWNKLTFGRGDLVYLDRPPKDSEELEDTTRKLLPRSTGPYK
VLKANEHTITLLIDGLQDNVSIDRVKRAPSSSGPPKSQPLAQRKNHDLRS
TLKSPHPLREFPRSRLAPQTRWSVPTIMTHRSQPTPIDLPLWTTLSFHKM
NINQNM*
back to top

mRNA from alignment at tig00004376_pilon:476121..477191-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6870.t1 ID=Gchil6870.t1|Name=Gchil6870.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1071bp|location=Sequence derived from alignment at tig00004376_pilon:476121..477191- (Gracilaria chilensis NLEC103_M9 male)
ATGGATATACTTATGCCTTTGCCTAACTCGTCCCATGGGAAACGGGTTGT
TTTGGTTATAACCGATAGATTTATAAAACTTACCCGAGCCCTACCCGTAA
GAAAGACAACGGCCACGGATGTCGCCACGGCCTTCTTGTCACACTGTGTA
TATCCATATGGAACGCTACTCTACCTCCTTATGGATAATGGAAGCCAGTT
TGTTTCCAAATTCTTCTCACAAGTTTGTGCTACCTTAGGAATCAAATATG
TGACCACCACCGCGTACCACCCGCAAACCAATGACCAAGCCGAACGTTTC
AAATGCACCCTTCTGAACCGATTGGCGCACTACGTTTCGGAGCACCAATT
GGACTGGGACCACTACATTGGGCCATTGGTTTATGCCTACAACACCCAGG
TGCACGCTTCCACAGGGACAATGCCTTTCCACTTAACGCTAGCGAGAGCG
CCGCCGCTGATAGCTGTTCACGTTCAGGAATCGATCATACCTCAGGACAT
AACCGAAGGAATGAATCCGACCCAGGCGAAGCGCTACTCGCGCCGACGCA
TTGACCGCATTCTCCAATCGACCACAACTGTACTAACCAAAGCCCAACGC
CGCTACAAGTGCAATTTCGACGAAGCCGTTTGGAACAAACTGACCTTTGG
GAGAGGAGACCTGGTTTACTTGGACCGGCCACCGAAGGACAGTGAGGAAC
TCGAGGACACTACGCGGAAGCTCTTACCCCGCTCTACGGGACCATACAAA
GTCCTTAAGGCAAATGAACACACCATCACGTTGCTCATTGATGGCCTACA
GGACAACGTGTCTATTGACCGCGTGAAACGAGCTCCCAGTTCCTCCGGAC
CACCAAAGTCCCAGCCCCTGGCCCAACGAAAGAACCACGACCTCAGGTCG
ACGCTCAAGTCTCCACACCCCCTAAGAGAGTTCCCGAGGAGTCGACTAGC
CCCACAGACCCGATGGTCAGTGCCAACTATTATGACCCATCGCTCCCAAC
CGACTCCGATTGATTTGCCCCTCTGGACCACACTCTCCTTCCACAAGATG
AACATCAACCAGAATATGTGA
back to top

Coding sequence (CDS) from alignment at tig00004376_pilon:476121..477191-

>Gchil6870.t1 ID=Gchil6870.t1|Name=Gchil6870.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1071bp|location=Sequence derived from alignment at tig00004376_pilon:476121..477191- (Gracilaria chilensis NLEC103_M9 male)
ATGGATATACTTATGCCTTTGCCTAACTCGTCCCATGGGAAACGGGTTGT
TTTGGTTATAACCGATAGATTTATAAAACTTACCCGAGCCCTACCCGTAA
GAAAGACAACGGCCACGGATGTCGCCACGGCCTTCTTGTCACACTGTGTA
TATCCATATGGAACGCTACTCTACCTCCTTATGGATAATGGAAGCCAGTT
TGTTTCCAAATTCTTCTCACAAGTTTGTGCTACCTTAGGAATCAAATATG
TGACCACCACCGCGTACCACCCGCAAACCAATGACCAAGCCGAACGTTTC
AAATGCACCCTTCTGAACCGATTGGCGCACTACGTTTCGGAGCACCAATT
GGACTGGGACCACTACATTGGGCCATTGGTTTATGCCTACAACACCCAGG
TGCACGCTTCCACAGGGACAATGCCTTTCCACTTAACGCTAGCGAGAGCG
CCGCCGCTGATAGCTGTTCACGTTCAGGAATCGATCATACCTCAGGACAT
AACCGAAGGAATGAATCCGACCCAGGCGAAGCGCTACTCGCGCCGACGCA
TTGACCGCATTCTCCAATCGACCACAACTGTACTAACCAAAGCCCAACGC
CGCTACAAGTGCAATTTCGACGAAGCCGTTTGGAACAAACTGACCTTTGG
GAGAGGAGACCTGGTTTACTTGGACCGGCCACCGAAGGACAGTGAGGAAC
TCGAGGACACTACGCGGAAGCTCTTACCCCGCTCTACGGGACCATACAAA
GTCCTTAAGGCAAATGAACACACCATCACGTTGCTCATTGATGGCCTACA
GGACAACGTGTCTATTGACCGCGTGAAACGAGCTCCCAGTTCCTCCGGAC
CACCAAAGTCCCAGCCCCTGGCCCAACGAAAGAACCACGACCTCAGGTCG
ACGCTCAAGTCTCCACACCCCCTAAGAGAGTTCCCGAGGAGTCGACTAGC
CCCACAGACCCGATGGTCAGTGCCAACTATTATGACCCATCGCTCCCAAC
CGACTCCGATTGATTTGCCCCTCTGGACCACACTCTCCTTCCACAAGATG
AACATCAACCAGAATATGTGA
back to top