Gchil6899.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6899.t1
Unique NameGchil6899.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length164
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:638958..639606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704432.1
Preferred nameUFC1
PFAMsUFC1
Max annot lvl2759|Eukaryota
KEGG koko:K12165
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0031624,GO:0032446,GO:0033554,GO:0034976,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044390,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0070647,GO:0071568,GO:0071569,GO:0071704,GO:0140096,GO:1901564,GO:1990564,GO:1990592
Evalue1.22e-90
EggNOG OGsKOG3357@1|root,KOG3357@2759|Eukaryota
DescriptionUFM1 transferase activity
COG categoryS
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6899Gchil6899Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 638958..639606 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6899.t1Gchil6899.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 638958..639606 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6899.t1.stop1Gchil6899.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 638958..638960 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6899.t1.CDS1Gchil6899.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 638958..639029 -
Gchil6899.t1.CDS2Gchil6899.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 639118..639417 -
Gchil6899.t1.CDS3Gchil6899.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 639487..639606 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6899.t1.exon1Gchil6899.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 638958..639029 -
Gchil6899.t1.exon2Gchil6899.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 639118..639417 -
Gchil6899.t1.exon3Gchil6899.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 639487..639606 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6899.t1.intron1Gchil6899.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004376_pilon 639030..639117 -
Gchil6899.t1.intron2Gchil6899.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004376_pilon 639418..639486 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6899.t1.start1Gchil6899.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 639604..639606 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6899.t1 ID=Gchil6899.t1|Name=Gchil6899.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=164bp
MDEGTKNTVNKLPLLSVRASPRDKDAWTARLKEELTALIQYVKINKEQDK
DWFQIECNKTGTRWSGKCWYYYEQIRYEFDLEFEIPVTYPASAPELKLPQ
LEGLTSKMYRGGKICQTIHFQPLWSKNVPRFGIAHSLALSLGPWLAAEIP
DLVGRGVIDSFKK*
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spliced messenger RNA

>Gchil6899.t1 ID=Gchil6899.t1|Name=Gchil6899.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=492bp|location=Sequence derived from alignment at tig00004376_pilon:638958..639606- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGAGGGGACGAAGAATACCGTAAATAAGCTTCCCCTGCTCAGCGT
TCGTGCGTCCCCTCGAGATAAAGACGCATGGACAGCGAGATTGAAGGAAG
AATTGACAGCTCTCATACAGTACGTGAAAATTAATAAGGAACAAGATAAA
GACTGGTTCCAAATCGAATGTAACAAAACAGGGACGAGATGGTCCGGAAA
ATGCTGGTACTACTACGAGCAAATACGCTACGAATTTGACCTTGAGTTTG
AAATTCCTGTTACATACCCTGCTTCAGCCCCGGAGCTTAAACTTCCACAA
CTTGAAGGATTGACTTCAAAGATGTATCGTGGCGGGAAAATATGTCAGAC
AATTCATTTTCAGCCTTTATGGTCGAAAAACGTTCCCCGATTTGGTATTG
CCCATTCCCTTGCACTCTCGTTGGGACCATGGCTAGCTGCCGAGATTCCA
GACTTGGTTGGTAGAGGCGTAATTGACAGTTTCAAGAAGTAA
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protein sequence of Gchil6899.t1

>Gchil6899.t1 ID=Gchil6899.t1|Name=Gchil6899.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=164bp
MDEGTKNTVNKLPLLSVRASPRDKDAWTARLKEELTALIQYVKINKEQDK
DWFQIECNKTGTRWSGKCWYYYEQIRYEFDLEFEIPVTYPASAPELKLPQ
LEGLTSKMYRGGKICQTIHFQPLWSKNVPRFGIAHSLALSLGPWLAAEIP
DLVGRGVIDSFKK*
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mRNA from alignment at tig00004376_pilon:638958..639606-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6899.t1 ID=Gchil6899.t1|Name=Gchil6899.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=649bp|location=Sequence derived from alignment at tig00004376_pilon:638958..639606- (Gracilaria chilensis NLEC103_M9 male)
ATGGATGAGGGGACGAAGAATACCGTAAATAAGCTTCCCCTGCTCAGCGT
TCGTGCGTCCCCTCGAGATAAAGACGCATGGACAGCGAGATTGAAGGAAG
AATTGACAGCTCTCATACAGGTACTTTTTAAGCATTTTACTCTTCTGCAT
TCATTCTTGTTTATCTGACTTCATCAATACTCTATAAAGTACGTGAAAAT
TAATAAGGAACAAGATAAAGACTGGTTCCAAATCGAATGTAACAAAACAG
GGACGAGATGGTCCGGAAAATGCTGGTACTACTACGAGCAAATACGCTAC
GAATTTGACCTTGAGTTTGAAATTCCTGTTACATACCCTGCTTCAGCCCC
GGAGCTTAAACTTCCACAACTTGAAGGATTGACTTCAAAGATGTATCGTG
GCGGGAAAATATGTCAGACAATTCATTTTCAGCCTTTATGGTCGAAAAAC
GTTCCCCGATTTGGTATTGCCCATTCCCTTGCACTCTCGGTAAGTTTGTA
CTCGCTTGTTTTTTTTTCGCTCGCGACAGGTACAATCTCTAACAAAAATG
CGTTCATGTTCCGTCACTTGGTTGTAGTTGGGACCATGGCTAGCTGCCGA
GATTCCAGACTTGGTTGGTAGAGGCGTAATTGACAGTTTCAAGAAGTAA
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Coding sequence (CDS) from alignment at tig00004376_pilon:638958..639606-

>Gchil6899.t1 ID=Gchil6899.t1|Name=Gchil6899.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=492bp|location=Sequence derived from alignment at tig00004376_pilon:638958..639606- (Gracilaria chilensis NLEC103_M9 male)
ATGGATGAGGGGACGAAGAATACCGTAAATAAGCTTCCCCTGCTCAGCGT
TCGTGCGTCCCCTCGAGATAAAGACGCATGGACAGCGAGATTGAAGGAAG
AATTGACAGCTCTCATACAGTACGTGAAAATTAATAAGGAACAAGATAAA
GACTGGTTCCAAATCGAATGTAACAAAACAGGGACGAGATGGTCCGGAAA
ATGCTGGTACTACTACGAGCAAATACGCTACGAATTTGACCTTGAGTTTG
AAATTCCTGTTACATACCCTGCTTCAGCCCCGGAGCTTAAACTTCCACAA
CTTGAAGGATTGACTTCAAAGATGTATCGTGGCGGGAAAATATGTCAGAC
AATTCATTTTCAGCCTTTATGGTCGAAAAACGTTCCCCGATTTGGTATTG
CCCATTCCCTTGCACTCTCGTTGGGACCATGGCTAGCTGCCGAGATTCCA
GACTTGGTTGGTAGAGGCGTAATTGACAGTTTCAAGAAGTAA
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