Gchil6846.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6846.t1
Unique NameGchil6846.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length567
Homology
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BLAST of Gchil6846.t1 vs. uniprot
Match: A0A2V3IH14_9FLOR (Protein NEDD1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH14_9FLOR)

HSP 1 Score: 559 bits (1440), Expect = 4.790e-192
Identity = 338/573 (58.99%), Postives = 417/573 (72.77%), Query Frame = 0 
Query:    1 MSSSPYLLSLSEDSLTLRDDTLRALSPSSQFTNSVSAFASTSDALAIASSSSSWTIGCISVFTTEPRQYDLQTSSSAITKLALSSDTTFAAVAYTDNTVQLLNVRSHQSREFSLSFRILSLSFNSQSAILSVCTAKTVVLFSVPTFRQVSEITPTSATRSFPRATTLRTCLTSAAISPLHPLLATSDDTGCVTVYDISVPSAPYTHAKFTSALRTPATTMCFSSTGVLAVAGFDKNIRLYDSHLKTLLFSIAIAAPATALSFHEDLIAVATSNSTISLIKADVRENSFVYHARAEAPESQTTALMLCPPCLALST-TKTSAQCSPKRRVDPLSQTFSDVESFLSRLPPLPPDKQVKQEQVSRRLQQRRSLPIMSKKAPDAGCERQSTTQLPVHLSASFLTDEQG-----SPPSSAGSASPVFYTESREGTEERQGDLKTLEERHRSPEISPLSRSAPGQGASVERTKSGE-LFDIGASVLRRAGVGRVSESADESDTLKTFRGILRQEMDVVRTDLHNDIVSIHSELVLLALTQSRELKEVVKERDETVVRLENEVRRLKADNLRLRRRYGLS 566
            MS+SPYLLSLS+D+++  D+ LR   P  QF  S +AFAS + A+A+ASSS       I V      Q+ L    SA+TKLALS DT F A AY  NTV L N+ SH++ E+S+  R+LSLS +S ++ILS+CT+KT+VL SV  F Q+S+ITPTSATRSFPRA+TLRT LT AA SP+  LLA+SDDTGCVTVYD   PS+  THA+FTSALR PATT+ FS+TGVLAVAGFDK+IRLYDS L TLLFSIAIAAPATALSF +D++AVA ++S+I+LI+ADV +NSF Y AR+EA ++ T AL+LCPP + LST  K  A  +  ++VDPLS+TFSDVE FLSRLPP P DK      VS+RL  RRS+PI+S     +  +++   QLPVHLSASFLTDEQ      SPPSSAG++SP+  + SR+ +     D  + +  H S E SPL  S   +    ER +S E LFD  ASVLR AGV R+ E+ +  D +  FR +LRQEMDV+RTDLHNDI+ IHSE+VLLA TQSRELK VVKERD TV RLENEVRRLKADNLRLR++Y LS
Sbjct:    1 MSNSPYLLSLSDDTVSFHDEALRLAEPPPQFDPSATAFASNAHAIAVASSSG-LEGSRIHVVQHSSPQHTLSAGHSAVTKLALSPDTRFLAAAYPHNTVHLFNITSHETFEYSVPSRVLSLSLDSNNSILSICTSKTIVLLSVTDFEQLSDITPTSATRSFPRASTLRTSLTCAAFSPIKSLLASSDDTGCVTVYDTENPSSLRTHARFTSALRAPATTLAFSTTGVLAVAGFDKHIRLYDSALNTLLFSIAIAAPATALSFRDDVLAVAGTDSSIALIQADVDDNSFTYIARSEASQAHTVALLLCPPSVTLSTRAKHDAGDALSQQVDPLSKTFSDVEGFLSRLPPRPRDKH--SSSVSKRLTPRRSMPILSTPPLISQHDQRKAAQLPVHLSASFLTDEQDEEASRSPPSSAGASSPLNRSVSRKHSHAMSHDSTSFDSEHSSREHSPLLASIAEE--EPERNQSSEELFDGSASVLREAGVTRLPEAGE--DLIHQFRSMLRQEMDVIRTDLHNDILGIHSEIVLLATTQSRELKNVVKERDATVSRLENEVRRLKADNLRLRKKYELS 566
The following BLAST results are available for this feature:
BLAST of Gchil6846.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IH14_9FLOR4.790e-19258.99Protein NEDD1 n=1 Tax=Gracilariopsis chorda TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 528..562
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 346..461
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 420..443
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 380..418
NoneNo IPR availablePANTHERPTHR44414PROTEIN NEDD1coord: 35..278
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 64..103
e-value: 3.0
score: 14.0
coord: 154..196
e-value: 6.7
score: 11.8
coord: 206..241
e-value: 0.58
score: 18.5
coord: 105..142
e-value: 94.0
score: 4.5
coord: 244..280
e-value: 78.0
score: 5.1
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 168..335
e-value: 9.3E-13
score: 50.2
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 2..166
e-value: 1.7E-8
score: 35.6
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 33..292

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:382074..383774 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6846.t1Gchil6846.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004376_pilon 382074..383774 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6846.t1 ID=Gchil6846.t1|Name=Gchil6846.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=567bp
MSSSPYLLSLSEDSLTLRDDTLRALSPSSQFTNSVSAFASTSDALAIASS
SSSWTIGCISVFTTEPRQYDLQTSSSAITKLALSSDTTFAAVAYTDNTVQ
LLNVRSHQSREFSLSFRILSLSFNSQSAILSVCTAKTVVLFSVPTFRQVS
EITPTSATRSFPRATTLRTCLTSAAISPLHPLLATSDDTGCVTVYDISVP
SAPYTHAKFTSALRTPATTMCFSSTGVLAVAGFDKNIRLYDSHLKTLLFS
IAIAAPATALSFHEDLIAVATSNSTISLIKADVRENSFVYHARAEAPESQ
TTALMLCPPCLALSTTKTSAQCSPKRRVDPLSQTFSDVESFLSRLPPLPP
DKQVKQEQVSRRLQQRRSLPIMSKKAPDAGCERQSTTQLPVHLSASFLTD
EQGSPPSSAGSASPVFYTESREGTEERQGDLKTLEERHRSPEISPLSRSA
PGQGASVERTKSGELFDIGASVLRRAGVGRVSESADESDTLKTFRGILRQ
EMDVVRTDLHNDIVSIHSELVLLALTQSRELKEVVKERDETVVRLENEVR
RLKADNLRLRRRYGLS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf