Gchil6876.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6876.t1
Unique NameGchil6876.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length408
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:567027..568250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX34511
Max annot lvl2759|Eukaryota
Evalue4.99e-56
EggNOG OGs28ITH@1|root,2QR4V@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6876Gchil6876Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 567027..568250 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6876.t1.stop1Gchil6876.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 567027..567029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6876.t1.CDS1Gchil6876.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 567027..568250 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6876.t1.exon1Gchil6876.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 567027..568250 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6876.t1.start1Gchil6876.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 568248..568250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6876.t1Gchil6876.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 567027..568250 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6876.t1 ID=Gchil6876.t1|Name=Gchil6876.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=408bp
MLNVWDTVVKGRRRTRARQKSNIVATVGVIVLIAMSVSRVLIQQSAQSKC
NTERAAESRIVSMSGAVPTHVNRSLPLFRIVVLTQSRPESLQRLLSSLRD
AKYDDYQADLDIWIDRVDTRELGAWYFSSAFGSRYTVQDSVVQVSSKFDW
PHGNKRVHVWQRQVGIWGQWIDTWRPSATEDEEFAVLLEDDLQVSPLYFQ
WLVSARRAYDSRNDVFGYTLQRGTLRANQTGFGRRPLRVSDEEEAYLYLL
LGSWGYAPKASSWAAFREWFHDKSCDENFKPYVHGLIPTKWYMKQEKRRT
MWTMWHICYAHLRRLYTVYANLPRDQTLAANWREPGLHFRGNENTKGRKR
ASAVTKQRDFALLGEGNTVDRAYDDAVGFKFPQPPVLLEWNGTYVRHDES
LIRAVSR*
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spliced messenger RNA

>Gchil6876.t1 ID=Gchil6876.t1|Name=Gchil6876.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1224bp|location=Sequence derived from alignment at tig00004376_pilon:567027..568250- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGAACGTCTGGGATACCGTGGTGAAAGGGAGAAGACGGACTCGAGC
TAGGCAAAAATCGAATATTGTTGCAACTGTGGGTGTAATCGTGCTCATTG
CAATGTCCGTGTCACGTGTGTTGATTCAGCAGAGTGCGCAAAGCAAGTGC
AACACTGAACGCGCTGCGGAATCGAGAATCGTTTCCATGTCAGGAGCTGT
GCCGACTCATGTGAATAGGTCTCTACCACTGTTTCGAATCGTTGTATTGA
CCCAATCGAGACCGGAGAGTTTGCAGCGTCTTCTGTCGTCGCTACGGGAT
GCGAAATACGATGATTATCAAGCGGACTTGGACATCTGGATAGACAGGGT
TGACACCAGGGAGCTTGGAGCTTGGTATTTTTCAAGTGCTTTTGGGTCGC
GATACACCGTACAAGACTCCGTAGTCCAGGTTTCAAGCAAGTTTGACTGG
CCACATGGGAATAAGCGTGTGCACGTATGGCAGCGTCAGGTAGGCATCTG
GGGGCAATGGATCGACACCTGGAGACCATCTGCAACGGAGGATGAAGAGT
TTGCAGTTTTGCTGGAGGACGACCTGCAAGTATCTCCGCTATATTTTCAA
TGGCTGGTATCCGCGCGACGAGCGTACGACTCAAGAAATGATGTGTTCGG
GTACACGCTTCAGCGCGGAACTCTTCGAGCCAATCAGACCGGGTTTGGTC
GACGGCCGCTGCGTGTGAGTGACGAGGAAGAAGCGTATCTGTACTTACTC
CTTGGCTCTTGGGGTTATGCCCCCAAGGCCAGTAGCTGGGCCGCTTTCCG
TGAGTGGTTTCATGACAAGAGTTGTGATGAGAACTTCAAGCCATACGTGC
ACGGTTTGATACCAACAAAATGGTACATGAAGCAAGAGAAGCGTCGGACA
ATGTGGACGATGTGGCACATTTGTTACGCACATCTGCGAAGACTTTACAC
CGTGTACGCGAATTTGCCCCGAGATCAAACACTGGCGGCGAATTGGCGCG
AGCCCGGACTTCATTTTCGGGGGAACGAGAACACCAAAGGTCGCAAACGC
GCAAGCGCAGTTACAAAGCAAAGAGATTTCGCGTTGTTGGGTGAAGGGAA
TACGGTGGACCGGGCGTATGACGATGCCGTTGGGTTCAAGTTCCCGCAAC
CCCCGGTTTTGTTGGAGTGGAATGGAACCTATGTCCGTCACGACGAAAGC
CTTATTCGAGCAGTGTCACGATGA
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protein sequence of Gchil6876.t1

>Gchil6876.t1 ID=Gchil6876.t1|Name=Gchil6876.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=408bp
MLNVWDTVVKGRRRTRARQKSNIVATVGVIVLIAMSVSRVLIQQSAQSKC
NTERAAESRIVSMSGAVPTHVNRSLPLFRIVVLTQSRPESLQRLLSSLRD
AKYDDYQADLDIWIDRVDTRELGAWYFSSAFGSRYTVQDSVVQVSSKFDW
PHGNKRVHVWQRQVGIWGQWIDTWRPSATEDEEFAVLLEDDLQVSPLYFQ
WLVSARRAYDSRNDVFGYTLQRGTLRANQTGFGRRPLRVSDEEEAYLYLL
LGSWGYAPKASSWAAFREWFHDKSCDENFKPYVHGLIPTKWYMKQEKRRT
MWTMWHICYAHLRRLYTVYANLPRDQTLAANWREPGLHFRGNENTKGRKR
ASAVTKQRDFALLGEGNTVDRAYDDAVGFKFPQPPVLLEWNGTYVRHDES
LIRAVSR*
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mRNA from alignment at tig00004376_pilon:567027..568250-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6876.t1 ID=Gchil6876.t1|Name=Gchil6876.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1224bp|location=Sequence derived from alignment at tig00004376_pilon:567027..568250- (Gracilaria chilensis NLEC103_M9 male)
ATGTTGAACGTCTGGGATACCGTGGTGAAAGGGAGAAGACGGACTCGAGC
TAGGCAAAAATCGAATATTGTTGCAACTGTGGGTGTAATCGTGCTCATTG
CAATGTCCGTGTCACGTGTGTTGATTCAGCAGAGTGCGCAAAGCAAGTGC
AACACTGAACGCGCTGCGGAATCGAGAATCGTTTCCATGTCAGGAGCTGT
GCCGACTCATGTGAATAGGTCTCTACCACTGTTTCGAATCGTTGTATTGA
CCCAATCGAGACCGGAGAGTTTGCAGCGTCTTCTGTCGTCGCTACGGGAT
GCGAAATACGATGATTATCAAGCGGACTTGGACATCTGGATAGACAGGGT
TGACACCAGGGAGCTTGGAGCTTGGTATTTTTCAAGTGCTTTTGGGTCGC
GATACACCGTACAAGACTCCGTAGTCCAGGTTTCAAGCAAGTTTGACTGG
CCACATGGGAATAAGCGTGTGCACGTATGGCAGCGTCAGGTAGGCATCTG
GGGGCAATGGATCGACACCTGGAGACCATCTGCAACGGAGGATGAAGAGT
TTGCAGTTTTGCTGGAGGACGACCTGCAAGTATCTCCGCTATATTTTCAA
TGGCTGGTATCCGCGCGACGAGCGTACGACTCAAGAAATGATGTGTTCGG
GTACACGCTTCAGCGCGGAACTCTTCGAGCCAATCAGACCGGGTTTGGTC
GACGGCCGCTGCGTGTGAGTGACGAGGAAGAAGCGTATCTGTACTTACTC
CTTGGCTCTTGGGGTTATGCCCCCAAGGCCAGTAGCTGGGCCGCTTTCCG
TGAGTGGTTTCATGACAAGAGTTGTGATGAGAACTTCAAGCCATACGTGC
ACGGTTTGATACCAACAAAATGGTACATGAAGCAAGAGAAGCGTCGGACA
ATGTGGACGATGTGGCACATTTGTTACGCACATCTGCGAAGACTTTACAC
CGTGTACGCGAATTTGCCCCGAGATCAAACACTGGCGGCGAATTGGCGCG
AGCCCGGACTTCATTTTCGGGGGAACGAGAACACCAAAGGTCGCAAACGC
GCAAGCGCAGTTACAAAGCAAAGAGATTTCGCGTTGTTGGGTGAAGGGAA
TACGGTGGACCGGGCGTATGACGATGCCGTTGGGTTCAAGTTCCCGCAAC
CCCCGGTTTTGTTGGAGTGGAATGGAACCTATGTCCGTCACGACGAAAGC
CTTATTCGAGCAGTGTCACGATGA
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Coding sequence (CDS) from alignment at tig00004376_pilon:567027..568250-

>Gchil6876.t1 ID=Gchil6876.t1|Name=Gchil6876.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1224bp|location=Sequence derived from alignment at tig00004376_pilon:567027..568250- (Gracilaria chilensis NLEC103_M9 male)
ATGTTGAACGTCTGGGATACCGTGGTGAAAGGGAGAAGACGGACTCGAGC
TAGGCAAAAATCGAATATTGTTGCAACTGTGGGTGTAATCGTGCTCATTG
CAATGTCCGTGTCACGTGTGTTGATTCAGCAGAGTGCGCAAAGCAAGTGC
AACACTGAACGCGCTGCGGAATCGAGAATCGTTTCCATGTCAGGAGCTGT
GCCGACTCATGTGAATAGGTCTCTACCACTGTTTCGAATCGTTGTATTGA
CCCAATCGAGACCGGAGAGTTTGCAGCGTCTTCTGTCGTCGCTACGGGAT
GCGAAATACGATGATTATCAAGCGGACTTGGACATCTGGATAGACAGGGT
TGACACCAGGGAGCTTGGAGCTTGGTATTTTTCAAGTGCTTTTGGGTCGC
GATACACCGTACAAGACTCCGTAGTCCAGGTTTCAAGCAAGTTTGACTGG
CCACATGGGAATAAGCGTGTGCACGTATGGCAGCGTCAGGTAGGCATCTG
GGGGCAATGGATCGACACCTGGAGACCATCTGCAACGGAGGATGAAGAGT
TTGCAGTTTTGCTGGAGGACGACCTGCAAGTATCTCCGCTATATTTTCAA
TGGCTGGTATCCGCGCGACGAGCGTACGACTCAAGAAATGATGTGTTCGG
GTACACGCTTCAGCGCGGAACTCTTCGAGCCAATCAGACCGGGTTTGGTC
GACGGCCGCTGCGTGTGAGTGACGAGGAAGAAGCGTATCTGTACTTACTC
CTTGGCTCTTGGGGTTATGCCCCCAAGGCCAGTAGCTGGGCCGCTTTCCG
TGAGTGGTTTCATGACAAGAGTTGTGATGAGAACTTCAAGCCATACGTGC
ACGGTTTGATACCAACAAAATGGTACATGAAGCAAGAGAAGCGTCGGACA
ATGTGGACGATGTGGCACATTTGTTACGCACATCTGCGAAGACTTTACAC
CGTGTACGCGAATTTGCCCCGAGATCAAACACTGGCGGCGAATTGGCGCG
AGCCCGGACTTCATTTTCGGGGGAACGAGAACACCAAAGGTCGCAAACGC
GCAAGCGCAGTTACAAAGCAAAGAGATTTCGCGTTGTTGGGTGAAGGGAA
TACGGTGGACCGGGCGTATGACGATGCCGTTGGGTTCAAGTTCCCGCAAC
CCCCGGTTTTGTTGGAGTGGAATGGAACCTATGTCCGTCACGACGAAAGC
CTTATTCGAGCAGTGTCACGATGA
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