Gchil6920.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6920.t1
Unique NameGchil6920.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length472
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:694604..696019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6920Gchil6920Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 694604..696019 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6920.t1.start1Gchil6920.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 694604..694606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6920.t1.CDS1Gchil6920.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 694604..696019 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6920.t1.exon1Gchil6920.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 694604..696019 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6920.t1.stop1Gchil6920.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 696017..696019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6920.t1Gchil6920.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 694604..696019 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6920.t1 ID=Gchil6920.t1|Name=Gchil6920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=472bp
MAPKQFYQDEKVLDQLLDNLLQTGQNENSSVFAPMNDNSNNFSQSSIHEK
LATASGLLEESKICPGLPSLDDNEHNIREVLAYALTAVIQLCKCCNANAN
LRNEAERSVLVVNEELLRLKRLNEVKKEKILRLDTKIMSMKKQVSDIEKE
KNLLVSNLTTECTELKTKCARSAYRVNHLSLEAKKREREYSQLQQRVHSL
MAKTKRLSIEPQIVAIAGNNSTKAPCISRDKSLETEEREYQDLVGLSEDN
SMNEVIVENKALRDLLRAVQEELDDCLISNPNLIVDPKTPTIKSSKKGIT
MDGEKVTGARSAEVSSSENVCSPQRGDQTSIQKNDQEDALDGQAYKQTTG
DEHRKYTSAKEPKTPTEATYCPSPIDMRENSGLKIDANQIQHQQKNSISP
TLVADAEVGTPVTGSPVRSGTLLSNLAPALSAEQMNLPFDMIRENLERSF
DQKFELLRLAVLQVGSKSPRA*
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spliced messenger RNA

>Gchil6920.t1 ID=Gchil6920.t1|Name=Gchil6920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1416bp|location=Sequence derived from alignment at tig00004376_pilon:694604..696019+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGAAGCAGTTCTATCAAGACGAGAAAGTTCTCGATCAACTACT
TGACAACCTGCTCCAAACCGGTCAAAATGAAAATAGCAGCGTATTTGCCC
CGATGAACGACAACTCCAATAACTTCTCGCAGTCGAGTATCCACGAAAAG
CTGGCCACAGCGAGTGGGCTTCTTGAAGAGAGTAAAATATGCCCAGGACT
GCCAAGTCTCGATGACAACGAACATAATATCAGGGAAGTTCTTGCGTATG
CATTGACGGCTGTTATCCAACTCTGCAAATGTTGTAATGCCAATGCCAAT
CTACGAAATGAAGCCGAACGTTCGGTTCTTGTTGTTAACGAAGAGCTTCT
TCGGCTTAAGAGACTCAACGAAGTGAAAAAGGAAAAGATCTTACGATTGG
ATACAAAGATTATGTCAATGAAAAAACAAGTAAGTGATATAGAAAAGGAG
AAAAATCTTCTTGTCTCGAATTTGACAACGGAGTGTACGGAGCTCAAGAC
GAAGTGCGCAAGGTCAGCGTATCGTGTAAATCACTTGTCTTTAGAGGCCA
AGAAGCGTGAACGAGAATACAGCCAGCTGCAACAGAGAGTCCATTCTTTG
ATGGCCAAGACAAAAAGATTGAGTATTGAACCACAAATTGTTGCCATCGC
GGGGAATAATTCCACCAAAGCCCCATGTATAAGCCGAGACAAATCTCTTG
AAACAGAAGAAAGAGAATATCAAGATTTGGTGGGGTTGTCAGAAGACAAC
AGCATGAATGAAGTGATTGTCGAAAACAAGGCCCTTCGAGATCTACTAAG
GGCAGTGCAAGAAGAACTAGACGACTGTCTAATATCTAATCCAAATTTGA
TAGTAGACCCAAAAACGCCAACAATCAAGTCTTCAAAAAAAGGTATCACA
ATGGATGGAGAAAAGGTGACCGGAGCCAGATCTGCCGAGGTCTCAAGTTC
AGAGAATGTATGTTCACCACAGCGAGGTGATCAAACCTCTATACAAAAAA
ATGACCAAGAAGACGCACTCGATGGGCAAGCATACAAACAAACGACAGGC
GATGAACACAGAAAATATACTTCTGCGAAGGAGCCGAAGACTCCTACAGA
AGCAACGTACTGTCCATCACCAATTGATATGAGGGAAAACAGTGGTTTGA
AGATAGATGCCAATCAGATACAACATCAACAAAAGAATTCAATTAGTCCT
ACACTGGTGGCGGACGCTGAAGTGGGAACTCCAGTTACGGGCAGTCCTGT
ACGAAGCGGGACACTTCTAAGCAATTTAGCCCCGGCCCTTTCCGCAGAGC
AAATGAATCTGCCGTTTGACATGATCCGCGAAAATCTGGAACGCAGCTTT
GACCAAAAATTTGAGCTCTTACGGCTGGCAGTTCTGCAAGTCGGAAGCAA
GAGTCCCCGTGCGTAA
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protein sequence of Gchil6920.t1

>Gchil6920.t1 ID=Gchil6920.t1|Name=Gchil6920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=472bp
MAPKQFYQDEKVLDQLLDNLLQTGQNENSSVFAPMNDNSNNFSQSSIHEK
LATASGLLEESKICPGLPSLDDNEHNIREVLAYALTAVIQLCKCCNANAN
LRNEAERSVLVVNEELLRLKRLNEVKKEKILRLDTKIMSMKKQVSDIEKE
KNLLVSNLTTECTELKTKCARSAYRVNHLSLEAKKREREYSQLQQRVHSL
MAKTKRLSIEPQIVAIAGNNSTKAPCISRDKSLETEEREYQDLVGLSEDN
SMNEVIVENKALRDLLRAVQEELDDCLISNPNLIVDPKTPTIKSSKKGIT
MDGEKVTGARSAEVSSSENVCSPQRGDQTSIQKNDQEDALDGQAYKQTTG
DEHRKYTSAKEPKTPTEATYCPSPIDMRENSGLKIDANQIQHQQKNSISP
TLVADAEVGTPVTGSPVRSGTLLSNLAPALSAEQMNLPFDMIRENLERSF
DQKFELLRLAVLQVGSKSPRA*
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mRNA from alignment at tig00004376_pilon:694604..696019+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6920.t1 ID=Gchil6920.t1|Name=Gchil6920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1416bp|location=Sequence derived from alignment at tig00004376_pilon:694604..696019+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCGAAGCAGTTCTATCAAGACGAGAAAGTTCTCGATCAACTACT
TGACAACCTGCTCCAAACCGGTCAAAATGAAAATAGCAGCGTATTTGCCC
CGATGAACGACAACTCCAATAACTTCTCGCAGTCGAGTATCCACGAAAAG
CTGGCCACAGCGAGTGGGCTTCTTGAAGAGAGTAAAATATGCCCAGGACT
GCCAAGTCTCGATGACAACGAACATAATATCAGGGAAGTTCTTGCGTATG
CATTGACGGCTGTTATCCAACTCTGCAAATGTTGTAATGCCAATGCCAAT
CTACGAAATGAAGCCGAACGTTCGGTTCTTGTTGTTAACGAAGAGCTTCT
TCGGCTTAAGAGACTCAACGAAGTGAAAAAGGAAAAGATCTTACGATTGG
ATACAAAGATTATGTCAATGAAAAAACAAGTAAGTGATATAGAAAAGGAG
AAAAATCTTCTTGTCTCGAATTTGACAACGGAGTGTACGGAGCTCAAGAC
GAAGTGCGCAAGGTCAGCGTATCGTGTAAATCACTTGTCTTTAGAGGCCA
AGAAGCGTGAACGAGAATACAGCCAGCTGCAACAGAGAGTCCATTCTTTG
ATGGCCAAGACAAAAAGATTGAGTATTGAACCACAAATTGTTGCCATCGC
GGGGAATAATTCCACCAAAGCCCCATGTATAAGCCGAGACAAATCTCTTG
AAACAGAAGAAAGAGAATATCAAGATTTGGTGGGGTTGTCAGAAGACAAC
AGCATGAATGAAGTGATTGTCGAAAACAAGGCCCTTCGAGATCTACTAAG
GGCAGTGCAAGAAGAACTAGACGACTGTCTAATATCTAATCCAAATTTGA
TAGTAGACCCAAAAACGCCAACAATCAAGTCTTCAAAAAAAGGTATCACA
ATGGATGGAGAAAAGGTGACCGGAGCCAGATCTGCCGAGGTCTCAAGTTC
AGAGAATGTATGTTCACCACAGCGAGGTGATCAAACCTCTATACAAAAAA
ATGACCAAGAAGACGCACTCGATGGGCAAGCATACAAACAAACGACAGGC
GATGAACACAGAAAATATACTTCTGCGAAGGAGCCGAAGACTCCTACAGA
AGCAACGTACTGTCCATCACCAATTGATATGAGGGAAAACAGTGGTTTGA
AGATAGATGCCAATCAGATACAACATCAACAAAAGAATTCAATTAGTCCT
ACACTGGTGGCGGACGCTGAAGTGGGAACTCCAGTTACGGGCAGTCCTGT
ACGAAGCGGGACACTTCTAAGCAATTTAGCCCCGGCCCTTTCCGCAGAGC
AAATGAATCTGCCGTTTGACATGATCCGCGAAAATCTGGAACGCAGCTTT
GACCAAAAATTTGAGCTCTTACGGCTGGCAGTTCTGCAAGTCGGAAGCAA
GAGTCCCCGTGCGTAA
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Coding sequence (CDS) from alignment at tig00004376_pilon:694604..696019+

>Gchil6920.t1 ID=Gchil6920.t1|Name=Gchil6920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1416bp|location=Sequence derived from alignment at tig00004376_pilon:694604..696019+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCGAAGCAGTTCTATCAAGACGAGAAAGTTCTCGATCAACTACT
TGACAACCTGCTCCAAACCGGTCAAAATGAAAATAGCAGCGTATTTGCCC
CGATGAACGACAACTCCAATAACTTCTCGCAGTCGAGTATCCACGAAAAG
CTGGCCACAGCGAGTGGGCTTCTTGAAGAGAGTAAAATATGCCCAGGACT
GCCAAGTCTCGATGACAACGAACATAATATCAGGGAAGTTCTTGCGTATG
CATTGACGGCTGTTATCCAACTCTGCAAATGTTGTAATGCCAATGCCAAT
CTACGAAATGAAGCCGAACGTTCGGTTCTTGTTGTTAACGAAGAGCTTCT
TCGGCTTAAGAGACTCAACGAAGTGAAAAAGGAAAAGATCTTACGATTGG
ATACAAAGATTATGTCAATGAAAAAACAAGTAAGTGATATAGAAAAGGAG
AAAAATCTTCTTGTCTCGAATTTGACAACGGAGTGTACGGAGCTCAAGAC
GAAGTGCGCAAGGTCAGCGTATCGTGTAAATCACTTGTCTTTAGAGGCCA
AGAAGCGTGAACGAGAATACAGCCAGCTGCAACAGAGAGTCCATTCTTTG
ATGGCCAAGACAAAAAGATTGAGTATTGAACCACAAATTGTTGCCATCGC
GGGGAATAATTCCACCAAAGCCCCATGTATAAGCCGAGACAAATCTCTTG
AAACAGAAGAAAGAGAATATCAAGATTTGGTGGGGTTGTCAGAAGACAAC
AGCATGAATGAAGTGATTGTCGAAAACAAGGCCCTTCGAGATCTACTAAG
GGCAGTGCAAGAAGAACTAGACGACTGTCTAATATCTAATCCAAATTTGA
TAGTAGACCCAAAAACGCCAACAATCAAGTCTTCAAAAAAAGGTATCACA
ATGGATGGAGAAAAGGTGACCGGAGCCAGATCTGCCGAGGTCTCAAGTTC
AGAGAATGTATGTTCACCACAGCGAGGTGATCAAACCTCTATACAAAAAA
ATGACCAAGAAGACGCACTCGATGGGCAAGCATACAAACAAACGACAGGC
GATGAACACAGAAAATATACTTCTGCGAAGGAGCCGAAGACTCCTACAGA
AGCAACGTACTGTCCATCACCAATTGATATGAGGGAAAACAGTGGTTTGA
AGATAGATGCCAATCAGATACAACATCAACAAAAGAATTCAATTAGTCCT
ACACTGGTGGCGGACGCTGAAGTGGGAACTCCAGTTACGGGCAGTCCTGT
ACGAAGCGGGACACTTCTAAGCAATTTAGCCCCGGCCCTTTCCGCAGAGC
AAATGAATCTGCCGTTTGACATGATCCGCGAAAATCTGGAACGCAGCTTT
GACCAAAAATTTGAGCTCTTACGGCTGGCAGTTCTGCAAGTCGGAAGCAA
GAGTCCCCGTGCGTAA
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