Gchil6823.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6823.t1
Unique NameGchil6823.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length169
Homology
BLAST of Gchil6823.t1 vs. uniprot
Match: A0A2V3J3H1_9FLOR (39S ribosomal protein L47, mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3H1_9FLOR)

HSP 1 Score: 218 bits (555), Expect = 4.660e-70
Identity = 112/156 (71.79%), Postives = 130/156 (83.33%), Query Frame = 0
Query:   13 LRTSGRTLCSNSKTVQPHSTKIDSQDGVLQFIDSGTSAGATRTGRAWRTSELRLKSYEDLHKLWFILLKERNVLLTEKAWCKTNSRYWVNGPSNLYKVKRSMARLKGVIGERTRAYKAKRAREALRAEQEDVGLGEAMLQSRTEGQCIKSRTVPPS 168
            LR + R++ +        + K+DSQ GVLQFIDSGTSAGATRTGRAWRTSELRLKSYEDLHKLWFILLKERN+LL+EKAWCKTNSR+WVNGPSNLYKVKRSMARLKGV+GERTRAYKAKRA+EAL AE++  GL +A+    +  Q + +RT PPS
Sbjct:   14 LRVARRSMSTAPSPTAEPAKKLDSQKGVLQFIDSGTSAGATRTGRAWRTSELRLKSYEDLHKLWFILLKERNILLSEKAWCKTNSRHWVNGPSNLYKVKRSMARLKGVVGERTRAYKAKRAKEALLAERDGQGLKDAVAPPASTPQGVATRT-PPS 168          
BLAST of Gchil6823.t1 vs. uniprot
Match: R7QV70_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QV70_CHOCR)

HSP 1 Score: 168 bits (425), Expect = 2.280e-50
Identity = 81/125 (64.80%), Postives = 102/125 (81.60%), Query Frame = 0
Query:   34 IDSQDGVLQFIDSGTSAGATRTGRAWRTSELRLKSYEDLHKLWFILLKERNVLLTEKAWCKTNSRYWVNGPSNLYKVKRSMARLKGVIGERTRAYKAKRAREALRAEQEDV-GLGEAMLQSRTEG 157
            +DSQ GV+QFID    AGA+R GRAWRTSELRLKSY+DLH+LWFILLKERN+LLTEK WC+++ R+WVNG SNLYKVKRSMAR+KGV+GER RA++AK+ R+A+  E +   GL +A+ +    G
Sbjct:   31 LDSQKGVMQFIDGEGGAGASRNGRAWRTSELRLKSYDDLHRLWFILLKERNILLTEKEWCRSHGRHWVNGQSNLYKVKRSMARIKGVVGERLRAFRAKKGRDAMVKESDAPRGLADALGEPTAHG 155          
BLAST of Gchil6823.t1 vs. uniprot
Match: A0A7S0ZDT6_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZDT6_9RHOD)

HSP 1 Score: 119 bits (299), Expect = 9.570e-31
Identity = 53/102 (51.96%), Postives = 73/102 (71.57%), Query Frame = 0
Query:   29 PHSTKIDSQDGVLQFIDSGTSAGATRTGRAWRTSELRLKSYEDLHKLWFILLKERNVLLTEKAWCKTNSRYWVNGPSNLYKVKRSMARLKGVIGERTRAYKA 130
            P  +K     GV +F++    AG  + GR+W +SELRLKS++DLHKLWF+ LKER +L TE+ WC+ N R+W  G S L+K+K++MAR+K V+ ER RAYKA
Sbjct:   42 PVRSKPTDSKGVYEFLEEAGYAGPMKVGRSWTSSELRLKSFDDLHKLWFVCLKERTLLFTEQEWCRANVRHWTGGKSKLWKLKKTMARIKTVVNERVRAYKA 143          
BLAST of Gchil6823.t1 vs. uniprot
Match: A0A6T6P0H2_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6P0H2_9RHOD)

HSP 1 Score: 107 bits (267), Expect = 1.430e-25
Identity = 51/93 (54.84%), Postives = 65/93 (69.89%), Query Frame = 0
Query:   36 SQDGVLQFIDSGTSAGATRTGRAWRTSELRLKSYEDLHKLWFILLKERNVLLTEKAWCKTNSRYWVNGPSNLYKVKRSMARLKGVIGERTRAY 128
            SQ GVL+F+D    AG+   GR W  SELRLKS EDL KLW++L+KER +L  EK WC +N ++W  G S L KV+ SM+R+K V+GER R Y
Sbjct:   34 SQAGVLEFLDPKGGAGSGPVGRPWLASELRLKSTEDLQKLWYVLIKERTILDIEKQWCDSNGQFWEGGRSRLRKVRTSMSRIKCVVGERIRLY 126          
BLAST of Gchil6823.t1 vs. uniprot
Match: A0A5J4YYL8_PORPP (54S ribosomal protein L4, mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YYL8_PORPP)

HSP 1 Score: 102 bits (254), Expect = 2.830e-23
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = 0
Query:   39 GVLQFIDSGTSAGATRTGRAWRTSELRLKSYEDLHKLWFILLKERNVLLTEKAWCKTNSRYWVNGPSNLYKVKRSMARLKGVIGERTRAYKAKR 132
            G+L  +D    A     GR+WR +ELRLKS+EDLHKLW+ILL+ER VL  E+ +C+ N  +W  G S L+K+K SM  +K V+GER +A+KA R
Sbjct:  135 GLLDLLDPSGQAAQVPCGRSWRVAELRLKSFEDLHKLWWILLRERAVLHAERHYCRVNGYHWKGGSSRLFKIKTSMRGIKIVVGERKKAFKAAR 228          
BLAST of Gchil6823.t1 vs. uniprot
Match: A0A7S1TNE6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TNE6_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.650e-22
Identity = 50/99 (50.51%), Postives = 67/99 (67.68%), Query Frame = 0
Query:   39 GVLQFIDSGTSAGATRTGRAWRTSELRLKSYEDLHKLWFILLKERNVLLTEKAWCKTNSRYWVNGPSNLYKVKRSMARLKGVIGERTRAYKAKRAREAL 137
            GV +F+D       T TGRAW   ELR KS++DLHKLWF+L KE+NV+LTE+A  +T SR  +  P  L+KVK SMARL+ V+ +R +  +A R  +AL
Sbjct:   12 GVEEFLDIAHQGADTITGRAWTAKELRKKSFDDLHKLWFVLYKEKNVILTEQARARTLSRE-MTAPERLHKVKLSMARLRHVVDDRRKVLQAARGEQAL 109          
BLAST of Gchil6823.t1 vs. uniprot
Match: A0A196SNS1_BLAHN (Ribosomal protein L29 family protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SNS1_BLAHN)

HSP 1 Score: 95.5 bits (236), Expect = 2.990e-22
Identity = 49/91 (53.85%), Postives = 68/91 (74.73%), Query Frame = 0
Query:   39 GVLQFIDSGTSAGATRT-GRAWRTSELRLKSYEDLHKLWFILLKERNVLLTEKAWCKTNSRYWVNGPSNLYKVKRSMARLKGVIGERTRAY 128
            G+ +F+++ ++AG     GRAW++SELRLKSY+DLHKLW++LLKE+N+LLTEK  CK+ +    + P  L+KVK SM RLKGV+ ER   Y
Sbjct:   17 GLEEFVEASSTAGKDIVYGRAWKSSELRLKSYDDLHKLWYVLLKEKNLLLTEKYDCKSRNVVMPH-PERLHKVKLSMKRLKGVLAERKVEY 106          
BLAST of Gchil6823.t1 vs. uniprot
Match: A0A7S1C9R4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9R4_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 5.730e-21
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 0
Query:   32 TKIDSQDGVLQFIDSGTSAG--ATRTGRAWRTSELRLKSYEDLHKLWFILLKERNVLLTEKAWCKTNSRYWVNGPSNLYKVKRSMARLKGVIGERTRA 127
            T+ +  + +L+F +    AG  A   GRAWRT+ELRLKS++DLHKLWF+LLKE+NVLLT++ + K      +  P  L KVK SMAR++ V+GER RA
Sbjct:    5 TQAEVDERILEFFEPLEKAGERAPTAGRAWRTAELRLKSFDDLHKLWFVLLKEKNVLLTQRTYFKQTG-LTMPDPYRLKKVKLSMARIQVVLGERRRA 101          
BLAST of Gchil6823.t1 vs. uniprot
Match: A0A2R5GKS1_9STRA (54S ribosomal protein L4, mitochondrial n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GKS1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 9.250e-21
Identity = 51/100 (51.00%), Postives = 66/100 (66.00%), Query Frame = 0
Query:   39 GVLQFID---SGTSAGATRTGRAWRTSELRLKSYEDLHKLWFILLKERNVLLTEKAWCKTNSRYWVNGPSNLYKVKRSMARLKGVIGERTRAYKAKRARE 135
            G+ +F D     ++ G   TGRAW   ELRLKS++DL KLWFILLKE+N+LLTEK   ++  +  V G   + KVK SMARLK V+ ER+R YKA +  E
Sbjct:   28 GIEEFFDVRGEKSTDGTVETGRAWTADELRLKSFDDLRKLWFILLKEKNMLLTEKHLARSMGQPMV-GADRIRKVKTSMARLKTVVNERSRVYKANKELE 126          
BLAST of Gchil6823.t1 vs. uniprot
Match: A0A3P3XZJ2_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3XZJ2_PLABS)

HSP 1 Score: 94.0 bits (232), Expect = 1.260e-20
Identity = 57/114 (50.00%), Postives = 72/114 (63.16%), Query Frame = 0
Query:   31 STKIDSQDGVLQFIDSGTSAGATRTGRAWRTSELRLKSYEDLHKLWFILLKERNVLLTEKAWCKTNSRYWVNGPSNLYKVKRSMARLKGVIGERTRAYKA----KRAREALRAE 140
            ST    +  +  F+D      A   GRAWR +ELRLKS+EDLHKLW++LLKE+N+LLT +   +       N P  L KV++SMARLK V+GER RAYKA    K+A EA  AE
Sbjct:   98 STTTTKESPLNVFVDDPQ---AVHVGRAWRANELRLKSFEDLHKLWYVLLKEKNMLLTVRNQNRIQKTIMPN-PGRLKKVRQSMARLKSVVGERVRAYKAAVAKKKAAEANVAE 207          
The following BLAST results are available for this feature:
BLAST of Gchil6823.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J3H1_9FLOR4.660e-7071.7939S ribosomal protein L47, mitochondrial n=1 Tax=G... [more]
R7QV70_CHOCR2.280e-5064.80Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0ZDT6_9RHOD9.570e-3151.96Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]
A0A6T6P0H2_9RHOD1.430e-2554.84Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A5J4YYL8_PORPP2.830e-2351.0654S ribosomal protein L4, mitochondrial n=1 Tax=Po... [more]
A0A7S1TNE6_9STRA1.650e-2250.51Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A196SNS1_BLAHN2.990e-2253.85Ribosomal protein L29 family protein n=1 Tax=Blast... [more]
A0A7S1C9R4_9STRA5.730e-2151.02Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A2R5GKS1_9STRA9.250e-2151.0054S ribosomal protein L4, mitochondrial n=1 Tax=Ho... [more]
A0A3P3XZJ2_PLABS1.260e-2050.00Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038340MRP-L47 superfamily, mitochondrialGENE3D6.10.330.20coord: 30..136
e-value: 6.9E-26
score: 92.2
IPR010729Ribosomal protein L47, mitochondrialPFAMPF06984MRP-L47coord: 53..124
e-value: 1.9E-22
score: 79.2
IPR010729Ribosomal protein L47, mitochondrialPANTHERPTHR21183RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATEDcoord: 10..138
NoneNo IPR availableCDDcd00427Ribosomal_L29_HIPcoord: 62..124
e-value: 4.73077E-6
score: 40.1635
IPR036049Ribosomal protein L29/L35 superfamilySUPERFAMILY46561Ribosomal protein L29 (L29p)coord: 59..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:63850..64356 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6823.t1Gchil6823.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004376_pilon 63850..64356 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6823.t1 ID=Gchil6823.t1|Name=Gchil6823.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=169bp
MNSKFAQLLSRSLRTSGRTLCSNSKTVQPHSTKIDSQDGVLQFIDSGTSA
GATRTGRAWRTSELRLKSYEDLHKLWFILLKERNVLLTEKAWCKTNSRYW
VNGPSNLYKVKRSMARLKGVIGERTRAYKAKRAREALRAEQEDVGLGEAM
LQSRTEGQCIKSRTVPPS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038340MRP-L47_sf
IPR010729Ribosomal_L47_mit
IPR036049Ribosomal_L29/L35_sf