Gchil6890.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6890.t1
Unique NameGchil6890.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length328
Homology
BLAST of Gchil6890.t1 vs. uniprot
Match: A0A2V3IP00_9FLOR (Two-component response regulator-like APRR1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IP00_9FLOR)

HSP 1 Score: 242 bits (618), Expect = 6.310e-75
Identity = 172/326 (52.76%), Postives = 210/326 (64.42%), Query Frame = 0
Query:    1 MLSNHAYHNMNRLAIRNNRENERRLLEELERISSDKHRAPALTHSVFSPESFALDCSPILSPLSLD--AHNDAMHLDFDHPQSFQPYTHFDTEPSTVQVDHTGELSHFPTSTWVASSLSSPXXXXXXXXXXXXXXRXXTPLHAXXXXXXXXXXXXXVPDTTANCKRPRSPSSFLLDGDQSPDNHTDHSMHSESEQSHDPTSPRIIQHFGNAQTSPVSIAPQQKHPVRTVQTKASIKPPXXXXSTSVHTCSSDAKKLSSVSSSTVATDADLSRKRRAEAMERFRRKKAVRCYARRVRYQVRKRIATTRPRVNGRFARRVDAVNHAAK 324
            MLSN AY++MN LAI  NRENERRLLEELERISSDKHR   L  SV + ESF+ D SP+LS LSLD  AH   + LD +   S   +  FDT+P++VQVDHTG++  F  S W+ S++SS               +    L+A   XXXXXXXXXX        KRPRS SS   D +Q P+  +D SM   S+Q+ DP SPR +Q FGN     +  +   K    T+ T A  KP     ++S  T  S+ K+ S +++  V+ DA+ SRKRRAEAMERFRRKKAVR YARRVRYQVRKRIATTRPRVNGRFARR+DA+NHAAK
Sbjct:    1 MLSNQAYNSMNCLAINRNRENERRLLEELERISSDKHRPNLLPDSVLNQESFSYD-SPMLSSLSLDTDAHESGLALDLNVTGSTSAFADFDTQPASVQVDHTGKMLDFSASAWLGSTVSSFPGSACVSSTSSSVDKAGGALNACVAXXXXXXXXXXX-XXXXXLKRPRSSSSLSSDAEQIPEQQSDDSMSITSDQNEDPVSPRSVQGFGNTHAPGLFKSQTAKQQGLTIATGALPKPGLTLRASSTKTTPSETKRSSFMTTQAVS-DAESSRKRRAEAMERFRRKKAVRSYARRVRYQVRKRIATTRPRVNGRFARRIDAINHAAK 323          
BLAST of Gchil6890.t1 vs. uniprot
Match: R7QS84_CHOCR (CCT domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QS84_CHOCR)

HSP 1 Score: 93.6 bits (231), Expect = 6.610e-18
Identity = 112/329 (34.04%), Postives = 145/329 (44.07%), Query Frame = 0
Query:   42 LTHSVFSPESFALDCSPILSPLSLDAHND--AMHLDF----DHPQSFQPYTHFDTEPSTVQVDHTG-ELSHFPTSTWVA--SSLSSPXXXXXXXXXXXXXXRXXTPLHAXXXXXXXXXXXXXVPDTTANCKRPRSPSSFLLDGDQSPDNHTD-------HSMHSESEQSHDPTSPRIIQHFGNAQTSPVSIAPQQKHP---------------------------VRTVQTKASIKPPXXXXSTSVHTCSSDAKKLSSVSSSTV--ATDADLSRKRRAEAMERFRRKKAVRCYARRVRYQVRKRIATTRPRVNGRFARRVDAVNHAAKS 325
            L +S    E F L  S  +SP+S D ++D   M LDF    D   +F P      +   +QVD  G ++    T+T +   S LS                    P +A             +  T A+ KRPRS S    D D   DN TD       + + +ES   +  T+  +         SP S+ P +K P                             T Q  +S  P     S+       D +++ + SS  V  +  A LSRKRRAEAMERFRRKKAVRCY RRVRYQ+RKRIATTRPRVNGRFARR DA + AA +
Sbjct:   41 LDNSALYSEEFFLSDSGFVSPISKDDNSDITGMALDFQDTPDTSLTFDPLCAASYD-ERLQVDRNGTKVGEDATATAILPMSLLSDLSGSIGMYASSPIPCPQDAPANAAVFAAAMTAAMI-MERTDASGKRPRSMSPETADEDYLGDNDTDENNMEETYDIITESSSDNSETTFHVSADSSVVGGSPRSVLPTRKTPHEVPSPLARNGRYNQQTSRPTTGRMSLTGTFQRNSSRAPVRRGGSSPRVP---DVQEMKACSSGNVDSSPSAILSRKRRAEAMERFRRKKAVRCYGRRVRYQIRKRIATTRPRVNGRFARRADAESKAAST 364          
BLAST of Gchil6890.t1 vs. uniprot
Match: A0A7S3EM42_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EM42_9RHOD)

HSP 1 Score: 58.5 bits (140), Expect = 2.020e-6
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 0
Query:  273 RAEAMERFRRKKAVRCYARRVRYQVRKRIATTRPRVNGRFARRVDAVN 320
            R EA+ER+RRKKA RC+ +++RYQ RKRIA+ RPRV GRFAR  + VN
Sbjct:  164 RQEALERYRRKKANRCFKKKIRYQCRKRIASDRPRVGGRFARIGEKVN 211          
The following BLAST results are available for this feature:
BLAST of Gchil6890.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IP00_9FLOR6.310e-7552.76Two-component response regulator-like APRR1 n=1 Ta... [more]
R7QS84_CHOCR6.610e-1834.04CCT domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A7S3EM42_9RHOD2.020e-664.58Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 12..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 178..195
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 196..227
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..228
IPR010402CCT domainPFAMPF06203CCTcoord: 273..315
e-value: 2.4E-11
score: 43.5
IPR010402CCT domainPROSITEPS51017CCTcoord: 273..315
score: 13.671559

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:604074..605057 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6890.t1Gchil6890.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004376_pilon 604074..605057 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6890.t1 ID=Gchil6890.t1|Name=Gchil6890.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=328bp
MLSNHAYHNMNRLAIRNNRENERRLLEELERISSDKHRAPALTHSVFSPE
SFALDCSPILSPLSLDAHNDAMHLDFDHPQSFQPYTHFDTEPSTVQVDHT
GELSHFPTSTWVASSLSSPPPSATVSSTSSTLDRSSTPLHACVAAAAATA
AIIVVPDTTANCKRPRSPSSFLLDGDQSPDNHTDHSMHSESEQSHDPTSP
RIIQHFGNAQTSPVSIAPQQKHPVRTVQTKASIKPPADHPSTSVHTCSSD
AKKLSSVSSSTVATDADLSRKRRAEAMERFRRKKAVRCYARRVRYQVRKR
IATTRPRVNGRFARRVDAVNHAAKSTT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010402CCT_domain