Gchil6890.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6890.t1
Unique NameGchil6890.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:604074..605057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28532.XP_010547768.1
Preferred nameTOC1
PFAMsCCT,Response_reg
Max annot lvl35493|Streptophyta
KEGG koko:K12127
KEGG Pathwayko04712,map04712
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0007623,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009892,GO:0009987,GO:0010031,GO:0010467,GO:0010468,GO:0010556,GO:0010605,GO:0010629,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031326,GO:0032501,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0048511,GO:0048519,GO:0050789,GO:0050794,GO:0050879,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903506,GO:2000112,GO:2001141
Evalue0.000885
EggNOG OGsCOG5641@1|root,KOG1601@2759|Eukaryota,37J2W@33090|Viridiplantae,3GDYI@35493|Streptophyta,3HUI0@3699|Brassicales
DescriptionTwo-component response
COG categoryK
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6890Gchil6890Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 604074..605057 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6890.t1.stop1Gchil6890.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 604074..604076 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6890.t1.CDS1Gchil6890.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 604074..605057 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6890.t1.exon1Gchil6890.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 604074..605057 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6890.t1.start1Gchil6890.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 605055..605057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6890.t1Gchil6890.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 604074..605057 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6890.t1 ID=Gchil6890.t1|Name=Gchil6890.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=328bp
MLSNHAYHNMNRLAIRNNRENERRLLEELERISSDKHRAPALTHSVFSPE
SFALDCSPILSPLSLDAHNDAMHLDFDHPQSFQPYTHFDTEPSTVQVDHT
GELSHFPTSTWVASSLSSPPPSATVSSTSSTLDRSSTPLHACVAAAAATA
AIIVVPDTTANCKRPRSPSSFLLDGDQSPDNHTDHSMHSESEQSHDPTSP
RIIQHFGNAQTSPVSIAPQQKHPVRTVQTKASIKPPADHPSTSVHTCSSD
AKKLSSVSSSTVATDADLSRKRRAEAMERFRRKKAVRCYARRVRYQVRKR
IATTRPRVNGRFARRVDAVNHAAKSTT*
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spliced messenger RNA

>Gchil6890.t1 ID=Gchil6890.t1|Name=Gchil6890.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=984bp|location=Sequence derived from alignment at tig00004376_pilon:604074..605057- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTCAAATCACGCCTACCACAACATGAACCGTCTTGCCATCCGCAA
CAATCGCGAAAATGAGCGCCGTCTTCTCGAGGAGCTCGAGCGTATCTCAT
CCGACAAGCATCGTGCTCCCGCTCTCACCCACTCCGTCTTCAGTCCCGAG
TCCTTTGCCTTGGACTGCTCCCCAATCCTATCCCCGCTCTCGCTCGATGC
TCACAACGACGCCATGCATCTTGATTTTGACCACCCTCAATCCTTTCAAC
CGTACACACACTTCGACACCGAGCCCTCCACAGTGCAGGTCGATCACACC
GGTGAGCTGTCCCATTTCCCAACCTCGACCTGGGTGGCATCCAGTCTTTC
CTCACCCCCTCCCTCAGCCACTGTATCCTCCACGTCCTCCACGCTTGACC
GCTCTTCAACTCCGCTACATGCGTGCGTGGCCGCTGCGGCCGCTACTGCC
GCCATCATCGTCGTGCCCGACACCACTGCCAACTGTAAGAGGCCAAGATC
GCCCAGTTCGTTCTTGTTGGATGGTGACCAATCCCCGGACAACCACACTG
ATCACAGCATGCATTCTGAATCCGAACAAAGCCATGATCCCACCAGTCCA
AGAATCATTCAGCATTTTGGAAACGCTCAAACTTCTCCTGTCTCCATCGC
TCCTCAACAAAAGCACCCTGTGCGTACTGTACAAACAAAGGCTTCCATCA
AGCCTCCTGCAGATCATCCCTCTACTTCCGTACACACTTGTTCGTCGGAT
GCAAAAAAGCTCTCTTCAGTGTCTTCAAGTACAGTTGCCACGGATGCTGA
CTTGTCTCGAAAGAGACGAGCAGAAGCTATGGAACGGTTTCGGCGCAAAA
AGGCCGTCAGATGCTACGCACGCCGCGTGAGGTATCAAGTTCGGAAGCGC
ATAGCCACCACTAGGCCTAGGGTGAACGGACGATTTGCCCGACGAGTCGA
TGCCGTTAATCACGCTGCGAAGAGCACAACGTAG
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protein sequence of Gchil6890.t1

>Gchil6890.t1 ID=Gchil6890.t1|Name=Gchil6890.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=328bp
MLSNHAYHNMNRLAIRNNRENERRLLEELERISSDKHRAPALTHSVFSPE
SFALDCSPILSPLSLDAHNDAMHLDFDHPQSFQPYTHFDTEPSTVQVDHT
GELSHFPTSTWVASSLSSPPPSATVSSTSSTLDRSSTPLHACVAAAAATA
AIIVVPDTTANCKRPRSPSSFLLDGDQSPDNHTDHSMHSESEQSHDPTSP
RIIQHFGNAQTSPVSIAPQQKHPVRTVQTKASIKPPADHPSTSVHTCSSD
AKKLSSVSSSTVATDADLSRKRRAEAMERFRRKKAVRCYARRVRYQVRKR
IATTRPRVNGRFARRVDAVNHAAKSTT*
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mRNA from alignment at tig00004376_pilon:604074..605057-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6890.t1 ID=Gchil6890.t1|Name=Gchil6890.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=984bp|location=Sequence derived from alignment at tig00004376_pilon:604074..605057- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTTCAAATCACGCCTACCACAACATGAACCGTCTTGCCATCCGCAA
CAATCGCGAAAATGAGCGCCGTCTTCTCGAGGAGCTCGAGCGTATCTCAT
CCGACAAGCATCGTGCTCCCGCTCTCACCCACTCCGTCTTCAGTCCCGAG
TCCTTTGCCTTGGACTGCTCCCCAATCCTATCCCCGCTCTCGCTCGATGC
TCACAACGACGCCATGCATCTTGATTTTGACCACCCTCAATCCTTTCAAC
CGTACACACACTTCGACACCGAGCCCTCCACAGTGCAGGTCGATCACACC
GGTGAGCTGTCCCATTTCCCAACCTCGACCTGGGTGGCATCCAGTCTTTC
CTCACCCCCTCCCTCAGCCACTGTATCCTCCACGTCCTCCACGCTTGACC
GCTCTTCAACTCCGCTACATGCGTGCGTGGCCGCTGCGGCCGCTACTGCC
GCCATCATCGTCGTGCCCGACACCACTGCCAACTGTAAGAGGCCAAGATC
GCCCAGTTCGTTCTTGTTGGATGGTGACCAATCCCCGGACAACCACACTG
ATCACAGCATGCATTCTGAATCCGAACAAAGCCATGATCCCACCAGTCCA
AGAATCATTCAGCATTTTGGAAACGCTCAAACTTCTCCTGTCTCCATCGC
TCCTCAACAAAAGCACCCTGTGCGTACTGTACAAACAAAGGCTTCCATCA
AGCCTCCTGCAGATCATCCCTCTACTTCCGTACACACTTGTTCGTCGGAT
GCAAAAAAGCTCTCTTCAGTGTCTTCAAGTACAGTTGCCACGGATGCTGA
CTTGTCTCGAAAGAGACGAGCAGAAGCTATGGAACGGTTTCGGCGCAAAA
AGGCCGTCAGATGCTACGCACGCCGCGTGAGGTATCAAGTTCGGAAGCGC
ATAGCCACCACTAGGCCTAGGGTGAACGGACGATTTGCCCGACGAGTCGA
TGCCGTTAATCACGCTGCGAAGAGCACAACGTAG
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Coding sequence (CDS) from alignment at tig00004376_pilon:604074..605057-

>Gchil6890.t1 ID=Gchil6890.t1|Name=Gchil6890.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=984bp|location=Sequence derived from alignment at tig00004376_pilon:604074..605057- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTTCAAATCACGCCTACCACAACATGAACCGTCTTGCCATCCGCAA
CAATCGCGAAAATGAGCGCCGTCTTCTCGAGGAGCTCGAGCGTATCTCAT
CCGACAAGCATCGTGCTCCCGCTCTCACCCACTCCGTCTTCAGTCCCGAG
TCCTTTGCCTTGGACTGCTCCCCAATCCTATCCCCGCTCTCGCTCGATGC
TCACAACGACGCCATGCATCTTGATTTTGACCACCCTCAATCCTTTCAAC
CGTACACACACTTCGACACCGAGCCCTCCACAGTGCAGGTCGATCACACC
GGTGAGCTGTCCCATTTCCCAACCTCGACCTGGGTGGCATCCAGTCTTTC
CTCACCCCCTCCCTCAGCCACTGTATCCTCCACGTCCTCCACGCTTGACC
GCTCTTCAACTCCGCTACATGCGTGCGTGGCCGCTGCGGCCGCTACTGCC
GCCATCATCGTCGTGCCCGACACCACTGCCAACTGTAAGAGGCCAAGATC
GCCCAGTTCGTTCTTGTTGGATGGTGACCAATCCCCGGACAACCACACTG
ATCACAGCATGCATTCTGAATCCGAACAAAGCCATGATCCCACCAGTCCA
AGAATCATTCAGCATTTTGGAAACGCTCAAACTTCTCCTGTCTCCATCGC
TCCTCAACAAAAGCACCCTGTGCGTACTGTACAAACAAAGGCTTCCATCA
AGCCTCCTGCAGATCATCCCTCTACTTCCGTACACACTTGTTCGTCGGAT
GCAAAAAAGCTCTCTTCAGTGTCTTCAAGTACAGTTGCCACGGATGCTGA
CTTGTCTCGAAAGAGACGAGCAGAAGCTATGGAACGGTTTCGGCGCAAAA
AGGCCGTCAGATGCTACGCACGCCGCGTGAGGTATCAAGTTCGGAAGCGC
ATAGCCACCACTAGGCCTAGGGTGAACGGACGATTTGCCCGACGAGTCGA
TGCCGTTAATCACGCTGCGAAGAGCACAACGTAG
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