Gchil7566.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7566.t1
Unique NameGchil7566.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length200
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:2044006..2045080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7566Gchil7566Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 2044006..2045080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7566.t1Gchil7566.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 2044006..2045080 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7566.t1.start1Gchil7566.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 2044006..2044008 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7566.t1.CDS1Gchil7566.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 2044006..2044070 +
Gchil7566.t1.CDS2Gchil7566.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 2044165..2044187 +
Gchil7566.t1.CDS3Gchil7566.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 2044569..2045080 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7566.t1.exon1Gchil7566.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 2044006..2044070 +
Gchil7566.t1.exon2Gchil7566.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 2044165..2044187 +
Gchil7566.t1.exon3Gchil7566.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 2044569..2045080 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7566.t1.intron1Gchil7566.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 2044071..2044164 +
Gchil7566.t1.intron2Gchil7566.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 2044188..2044568 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7566.t1.stop1Gchil7566.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 2045078..2045080 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7566.t1 ID=Gchil7566.t1|Name=Gchil7566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=200bp
MRQKLRSLQNWRVETRSLEPKLAAVEKSKVVLEQLTASKGNEIQAVQRIK
QRLPEGPYFPGLRRPFDYEELCSFVRALEERGKNFENISRFLLRERSTSE
LIWMYYARHKQLRMQSFSRLREEQFKDNGTNMLKSIPISNERVINAVRCH
AISAGDGFPLEYRVHKALSTYRQCVAERELRRRNDEALRRPTRLRNRDE*
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spliced messenger RNA

>Gchil7566.t1 ID=Gchil7566.t1|Name=Gchil7566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=600bp|location=Sequence derived from alignment at tig00000007_pilon:2044006..2045080+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCAGAAACTTCGCTCTCTTCAAAACTGGCGCGTTGAAACGCGCTC
TTTAGAACCCAAGTTAGCCGCTGTCGAAAAATCCAAAGTGGTTTTGGAAC
AGCTTACCGCCAGTAAGGGAAACGAAATTCAGGCTGTACAAAGGATTAAA
CAACGTTTACCGGAAGGGCCATATTTTCCTGGTCTGAGGCGTCCATTCGA
TTACGAGGAGCTTTGTTCGTTTGTGCGAGCACTTGAGGAGCGTGGAAAGA
ACTTTGAGAATATTTCTCGTTTTTTGCTTCGGGAACGCTCTACTTCCGAA
CTGATATGGATGTACTATGCGAGGCATAAGCAACTTCGGATGCAAAGCTT
CTCTCGTCTTCGGGAAGAACAATTCAAAGACAATGGTACAAATATGCTGA
AGAGTATCCCAATATCAAACGAACGCGTAATAAATGCAGTTCGTTGTCAC
GCAATATCTGCTGGTGATGGATTTCCGTTGGAATATCGGGTGCATAAGGC
TCTTTCTACCTATCGTCAGTGCGTGGCTGAGCGTGAACTGAGGAGGAGAA
ATGACGAAGCTTTGCGAAGGCCCACTCGTCTGCGCAATCGAGATGAGTGA
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protein sequence of Gchil7566.t1

>Gchil7566.t1 ID=Gchil7566.t1|Name=Gchil7566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=200bp
MRQKLRSLQNWRVETRSLEPKLAAVEKSKVVLEQLTASKGNEIQAVQRIK
QRLPEGPYFPGLRRPFDYEELCSFVRALEERGKNFENISRFLLRERSTSE
LIWMYYARHKQLRMQSFSRLREEQFKDNGTNMLKSIPISNERVINAVRCH
AISAGDGFPLEYRVHKALSTYRQCVAERELRRRNDEALRRPTRLRNRDE*
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mRNA from alignment at tig00000007_pilon:2044006..2045080+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7566.t1 ID=Gchil7566.t1|Name=Gchil7566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1075bp|location=Sequence derived from alignment at tig00000007_pilon:2044006..2045080+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCAGAAACTTCGCTCTCTTCAAAACTGGCGCGTTGAAACGCGCTC
TTTAGAACCCAAGTTGTACGTGCTCGCATTTCACGTTTTGCACTTGTTTT
TCCTATGTATCCCTTCTTTCGTGTACTTACTTAGCCTGTATTTGAGGCCC
TTATCACAGAGCCGCTGTCGAAAAATCCAAAGgtaaaagagtccgagaaa
tccctgactatcaacccccacctgacttcgaaccagaggactatttagac
gaagaagcaccccgtcgaaagcaacgccgcgccacatcacgtccatctat
ttcgattcccgcaccgccctccccgttgcaaagcgaaccgcaaggcgcca
cagttcacgtgggtgaagactatcaagcagatgtcccggaaaacccgctc
tcggaacagcaacgcaaagagaacccgccaatcgtcacatccaagctcgt
attTTCCGTACGTGCATGTGGCGGAAACTCTGTGATTAACAGATTTTTGT
CTCACGAAAATACAAGATCTCGTGAACAGCGTGGTTTCGATCTGGCCCCA
TTTCAACTGGAAGTGGTTTTGGAACAGCTTACCGCCAGTAAGGGAAACGA
AATTCAGGCTGTACAAAGGATTAAACAACGTTTACCGGAAGGGCCATATT
TTCCTGGTCTGAGGCGTCCATTCGATTACGAGGAGCTTTGTTCGTTTGTG
CGAGCACTTGAGGAGCGTGGAAAGAACTTTGAGAATATTTCTCGTTTTTT
GCTTCGGGAACGCTCTACTTCCGAACTGATATGGATGTACTATGCGAGGC
ATAAGCAACTTCGGATGCAAAGCTTCTCTCGTCTTCGGGAAGAACAATTC
AAAGACAATGGTACAAATATGCTGAAGAGTATCCCAATATCAAACGAACG
CGTAATAAATGCAGTTCGTTGTCACGCAATATCTGCTGGTGATGGATTTC
CGTTGGAATATCGGGTGCATAAGGCTCTTTCTACCTATCGTCAGTGCGTG
GCTGAGCGTGAACTGAGGAGGAGAAATGACGAAGCTTTGCGAAGGCCCAC
TCGTCTGCGCAATCGAGATGAGTGA
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Coding sequence (CDS) from alignment at tig00000007_pilon:2044006..2045080+

>Gchil7566.t1 ID=Gchil7566.t1|Name=Gchil7566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=600bp|location=Sequence derived from alignment at tig00000007_pilon:2044006..2045080+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCAGAAACTTCGCTCTCTTCAAAACTGGCGCGTTGAAACGCGCTC
TTTAGAACCCAAGTTAGCCGCTGTCGAAAAATCCAAAGTGGTTTTGGAAC
AGCTTACCGCCAGTAAGGGAAACGAAATTCAGGCTGTACAAAGGATTAAA
CAACGTTTACCGGAAGGGCCATATTTTCCTGGTCTGAGGCGTCCATTCGA
TTACGAGGAGCTTTGTTCGTTTGTGCGAGCACTTGAGGAGCGTGGAAAGA
ACTTTGAGAATATTTCTCGTTTTTTGCTTCGGGAACGCTCTACTTCCGAA
CTGATATGGATGTACTATGCGAGGCATAAGCAACTTCGGATGCAAAGCTT
CTCTCGTCTTCGGGAAGAACAATTCAAAGACAATGGTACAAATATGCTGA
AGAGTATCCCAATATCAAACGAACGCGTAATAAATGCAGTTCGTTGTCAC
GCAATATCTGCTGGTGATGGATTTCCGTTGGAATATCGGGTGCATAAGGC
TCTTTCTACCTATCGTCAGTGCGTGGCTGAGCGTGAACTGAGGAGGAGAA
ATGACGAAGCTTTGCGAAGGCCCACTCGTCTGCGCAATCGAGATGAGTGA
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