Gchil3765.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3765.t1
Unique NameGchil3765.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length283
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:210691..211539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708527.1
PFAMsRibosomal_L3
Max annot lvl2759|Eukaryota
KEGG koko:K02906
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Evalue3.46e-74
EggNOG OGsCOG0087@1|root,KOG3141@2759|Eukaryota
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3765Gchil3765Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 210691..211539 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3765.t1.stop1Gchil3765.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 210691..210693 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3765.t1.CDS1Gchil3765.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 210691..211539 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3765.t1.exon1Gchil3765.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 210691..211539 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3765.t1.start1Gchil3765.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 211537..211539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3765.t1Gchil3765.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 210691..211539 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3765.t1 ID=Gchil3765.t1|Name=Gchil3765.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=283bp
MLSSLGTKWRQIARSLCTSLSDAQPPRTLPGFSGEYRPCGALARKVGMMS
LWDAQGTRHPITVLCIDRCHVLSVAPPNPNDHRNRWRIQVGAGPKRPYKT
NKALRYHCAKAGVEPKYKLAEFGVHEMFKLDVGTEIRSSHFSVGQLVDIT
GTSIGKGTQGVMKRWGFSGAPATHGTSKTHRKGGSIGMSTKPGRVFKGKK
MAGRMGNDKVTVQNLMVYRVDSDRNLIYVRGAVPGNSGNWVRVRDAVKKL
RRNDPAPPPLRNSTEGILEWRNDGLVEAIEFS*
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spliced messenger RNA

>Gchil3765.t1 ID=Gchil3765.t1|Name=Gchil3765.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=849bp|location=Sequence derived from alignment at tig00000010_pilon:210691..211539- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTCGTCATTGGGAACCAAATGGAGGCAGATTGCCCGTTCTCTCTG
TACCTCGCTGTCTGACGCCCAGCCGCCGAGAACGTTACCCGGCTTCAGCG
GCGAGTATCGTCCATGCGGCGCCCTAGCGCGCAAGGTTGGAATGATGAGT
CTGTGGGATGCCCAGGGGACCCGTCATCCTATTACAGTCCTTTGCATAGA
CCGCTGTCACGTCCTCAGCGTTGCGCCCCCAAACCCGAACGATCACCGAA
ACCGTTGGCGAATCCAGGTCGGAGCCGGTCCGAAACGGCCCTACAAGACC
AATAAGGCCCTGCGATATCACTGTGCCAAGGCGGGTGTGGAGCCCAAGTA
CAAGCTGGCCGAGTTTGGCGTTCACGAAATGTTTAAACTTGATGTGGGAA
CTGAGATTCGTTCAAGCCATTTCTCAGTGGGTCAACTCGTGGATATCACA
GGAACCTCCATCGGAAAGGGAACTCAGGGCGTCATGAAGCGTTGGGGTTT
TTCTGGAGCCCCTGCTACCCATGGAACGAGCAAGACGCACCGGAAGGGTG
GTTCTATTGGCATGTCTACAAAACCGGGGCGCGTGTTCAAGGGAAAGAAA
ATGGCTGGACGTATGGGCAATGACAAGGTTACCGTACAAAATTTAATGGT
GTATAGAGTGGATTCAGATCGCAATCTCATTTACGTCCGTGGTGCTGTCC
CAGGAAACTCGGGCAATTGGGTTCGCGTGAGAGATGCTGTTAAAAAGTTG
CGACGAAATGATCCAGCCCCGCCTCCTTTGCGTAACAGTACGGAAGGCAT
TCTTGAATGGAGAAACGACGGTCTCGTGGAAGCCATTGAATTCAGCTGA
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protein sequence of Gchil3765.t1

>Gchil3765.t1 ID=Gchil3765.t1|Name=Gchil3765.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=283bp
MLSSLGTKWRQIARSLCTSLSDAQPPRTLPGFSGEYRPCGALARKVGMMS
LWDAQGTRHPITVLCIDRCHVLSVAPPNPNDHRNRWRIQVGAGPKRPYKT
NKALRYHCAKAGVEPKYKLAEFGVHEMFKLDVGTEIRSSHFSVGQLVDIT
GTSIGKGTQGVMKRWGFSGAPATHGTSKTHRKGGSIGMSTKPGRVFKGKK
MAGRMGNDKVTVQNLMVYRVDSDRNLIYVRGAVPGNSGNWVRVRDAVKKL
RRNDPAPPPLRNSTEGILEWRNDGLVEAIEFS*
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mRNA from alignment at tig00000010_pilon:210691..211539-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3765.t1 ID=Gchil3765.t1|Name=Gchil3765.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=849bp|location=Sequence derived from alignment at tig00000010_pilon:210691..211539- (Gracilaria chilensis NLEC103_M9 male)
ATGCTGTCGTCATTGGGAACCAAATGGAGGCAGATTGCCCGTTCTCTCTG
TACCTCGCTGTCTGACGCCCAGCCGCCGAGAACGTTACCCGGCTTCAGCG
GCGAGTATCGTCCATGCGGCGCCCTAGCGCGCAAGGTTGGAATGATGAGT
CTGTGGGATGCCCAGGGGACCCGTCATCCTATTACAGTCCTTTGCATAGA
CCGCTGTCACGTCCTCAGCGTTGCGCCCCCAAACCCGAACGATCACCGAA
ACCGTTGGCGAATCCAGGTCGGAGCCGGTCCGAAACGGCCCTACAAGACC
AATAAGGCCCTGCGATATCACTGTGCCAAGGCGGGTGTGGAGCCCAAGTA
CAAGCTGGCCGAGTTTGGCGTTCACGAAATGTTTAAACTTGATGTGGGAA
CTGAGATTCGTTCAAGCCATTTCTCAGTGGGTCAACTCGTGGATATCACA
GGAACCTCCATCGGAAAGGGAACTCAGGGCGTCATGAAGCGTTGGGGTTT
TTCTGGAGCCCCTGCTACCCATGGAACGAGCAAGACGCACCGGAAGGGTG
GTTCTATTGGCATGTCTACAAAACCGGGGCGCGTGTTCAAGGGAAAGAAA
ATGGCTGGACGTATGGGCAATGACAAGGTTACCGTACAAAATTTAATGGT
GTATAGAGTGGATTCAGATCGCAATCTCATTTACGTCCGTGGTGCTGTCC
CAGGAAACTCGGGCAATTGGGTTCGCGTGAGAGATGCTGTTAAAAAGTTG
CGACGAAATGATCCAGCCCCGCCTCCTTTGCGTAACAGTACGGAAGGCAT
TCTTGAATGGAGAAACGACGGTCTCGTGGAAGCCATTGAATTCAGCTGA
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Coding sequence (CDS) from alignment at tig00000010_pilon:210691..211539-

>Gchil3765.t1 ID=Gchil3765.t1|Name=Gchil3765.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=849bp|location=Sequence derived from alignment at tig00000010_pilon:210691..211539- (Gracilaria chilensis NLEC103_M9 male)
ATGCTGTCGTCATTGGGAACCAAATGGAGGCAGATTGCCCGTTCTCTCTG
TACCTCGCTGTCTGACGCCCAGCCGCCGAGAACGTTACCCGGCTTCAGCG
GCGAGTATCGTCCATGCGGCGCCCTAGCGCGCAAGGTTGGAATGATGAGT
CTGTGGGATGCCCAGGGGACCCGTCATCCTATTACAGTCCTTTGCATAGA
CCGCTGTCACGTCCTCAGCGTTGCGCCCCCAAACCCGAACGATCACCGAA
ACCGTTGGCGAATCCAGGTCGGAGCCGGTCCGAAACGGCCCTACAAGACC
AATAAGGCCCTGCGATATCACTGTGCCAAGGCGGGTGTGGAGCCCAAGTA
CAAGCTGGCCGAGTTTGGCGTTCACGAAATGTTTAAACTTGATGTGGGAA
CTGAGATTCGTTCAAGCCATTTCTCAGTGGGTCAACTCGTGGATATCACA
GGAACCTCCATCGGAAAGGGAACTCAGGGCGTCATGAAGCGTTGGGGTTT
TTCTGGAGCCCCTGCTACCCATGGAACGAGCAAGACGCACCGGAAGGGTG
GTTCTATTGGCATGTCTACAAAACCGGGGCGCGTGTTCAAGGGAAAGAAA
ATGGCTGGACGTATGGGCAATGACAAGGTTACCGTACAAAATTTAATGGT
GTATAGAGTGGATTCAGATCGCAATCTCATTTACGTCCGTGGTGCTGTCC
CAGGAAACTCGGGCAATTGGGTTCGCGTGAGAGATGCTGTTAAAAAGTTG
CGACGAAATGATCCAGCCCCGCCTCCTTTGCGTAACAGTACGGAAGGCAT
TCTTGAATGGAGAAACGACGGTCTCGTGGAAGCCATTGAATTCAGCTGA
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