Gchil3933.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3933.t1
Unique NameGchil3933.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length358
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1472511..1474270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706482.1
PFAMsRRM_1,WW
Max annot lvl2759|Eukaryota
KEGG rclassRC00061
KEGG koko:K03942,ko:K14411
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko03015,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map03015,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
Evalue8.13e-57
EggNOG OGsKOG4205@1|root,KOG4205@2759|Eukaryota
EC1.6.5.3,1.6.99.3
Descriptionpoly(U) RNA binding
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3933Gchil3933Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1472511..1474270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3933.t1Gchil3933.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1472511..1474270 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3933.t1.start1Gchil3933.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1472511..1472513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3933.t1.CDS1Gchil3933.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1472511..1473435 +
Gchil3933.t1.CDS2Gchil3933.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1473767..1473816 +
Gchil3933.t1.CDS3Gchil3933.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1474172..1474270 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3933.t1.exon1Gchil3933.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1472511..1473435 +
Gchil3933.t1.exon2Gchil3933.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1473767..1473816 +
Gchil3933.t1.exon3Gchil3933.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1474172..1474270 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3933.t1.intron1Gchil3933.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1473436..1473766 +
Gchil3933.t1.intron2Gchil3933.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1473817..1474171 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3933.t1.stop1Gchil3933.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1474268..1474270 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3933.t1 ID=Gchil3933.t1|Name=Gchil3933.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=358bp
MATLHPPQVDGTPSHDQEPSEKWTARDAPPNPQGNPDDFPNKSNDTEPTK
QPPEQPKSSDPQTPEPPNVPSALYEQQQRAFQQQQQYSQPPPQPQTQPSP
PSSSAGCKIFVGGLSWETDEQSLRAYFEQIGTVLDCVIMRDRHTGHPRGF
GFVTFADEDAAAAAASRRHDLDGRQVEAKRAVPRSEGSSTSAPTQSASFT
AAPRGMRYSEGPSQGAPHRAHHTTKCKVFVGGLPSGCGGDEFRNYFSRYG
EVVDAQVMIDHNTGNSRGFGFVTFANEATVNTVVGPGKSNTDHEIMGKCV
EVKRAEPKARVCLPMPPRQTLRAPEDMTTPMDQDDMAAAVDTVGAMAVGM
AVGMAAK*
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spliced messenger RNA

>Gchil3933.t1 ID=Gchil3933.t1|Name=Gchil3933.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000010_pilon:1472511..1474270+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACTCTACACCCACCGCAGGTCGACGGCACCCCATCTCACGATCA
AGAACCTTCCGAAAAATGGACCGCGCGCGATGCCCCTCCCAACCCCCAAG
GAAACCCGGACGATTTCCCCAACAAATCCAACGATACAGAACCCACCAAA
CAGCCGCCCGAACAACCCAAATCTTCTGACCCACAAACACCGGAGCCTCC
AAACGTCCCCTCTGCTCTATACGAACAACAGCAACGCGCCTTCCAGCAAC
AGCAGCAATACTCTCAACCCCCACCACAACCCCAAACCCAGCCCTCACCT
CCCTCCTCCTCCGCCGGCTGCAAAATCTTTGTGGGCGGCCTCTCCTGGGA
GACTGATGAACAGTCACTGCGCGCTTACTTTGAGCAGATAGGAACCGTAC
TGGACTGCGTTATCATGCGCGATCGCCACACCGGCCATCCACGCGGCTTT
GGCTTTGTCACTTTTGCCGATGAAGAcgccgccgccgccgccgcctcgcg
ccgccACGATTTGGATGGCCGTCAAGTTGAGGCTAAACGAGCCGTCCCGA
GGAGCGAAGGTTCCTCTACATCCGCTCCCACCCAATCCGCTTCTTTCACC
GCTGCCCCGCGCGGCATGCGCTATAGCGAGGGTCCTTCTCAAGGCGCCCC
GCATCGTGCACACCACACCACCAAGTGCAAGGTGTTTGTGGGCGGTCTGC
CGTCTGGCTGCGGCGGCGACGAGTTTCGCAACTACTTTTCGCGATATGGA
GAGGTTGTCGATGCGCAAGTCATGATCGACCACAATACTGGCAACTCGCG
AGGGTTTGGATTTGTCACGTTTGCAAACGAGGCCACTGTTAATACGGTGG
TCGGCCCAGGAAAATCAAACACGGACCATGAGATAATGGGCAAATGTGTT
GAAGTGAAGAGAGCGGAGCCCAAAGcgcgggtatgcctgccaatgccgcc
tcgccaaacgctccgggcgccggagGATATGACAACTCCCATGGATCAGG
ACGATAtggcggcagcggtggacacggtgggggccatggcggtgggcatg
gcggtgggcatggcAGCGAAATAG
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protein sequence of Gchil3933.t1

>Gchil3933.t1 ID=Gchil3933.t1|Name=Gchil3933.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=358bp
MATLHPPQVDGTPSHDQEPSEKWTARDAPPNPQGNPDDFPNKSNDTEPTK
QPPEQPKSSDPQTPEPPNVPSALYEQQQRAFQQQQQYSQPPPQPQTQPSP
PSSSAGCKIFVGGLSWETDEQSLRAYFEQIGTVLDCVIMRDRHTGHPRGF
GFVTFADEDAAAAAASRRHDLDGRQVEAKRAVPRSEGSSTSAPTQSASFT
AAPRGMRYSEGPSQGAPHRAHHTTKCKVFVGGLPSGCGGDEFRNYFSRYG
EVVDAQVMIDHNTGNSRGFGFVTFANEATVNTVVGPGKSNTDHEIMGKCV
EVKRAEPKARVCLPMPPRQTLRAPEDMTTPMDQDDMAAAVDTVGAMAVGM
AVGMAAK*
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mRNA from alignment at tig00000010_pilon:1472511..1474270+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3933.t1 ID=Gchil3933.t1|Name=Gchil3933.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1760bp|location=Sequence derived from alignment at tig00000010_pilon:1472511..1474270+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAACTCTACACCCACCGCAGGTCGACGGCACCCCATCTCACGATCA
AGAACCTTCCGAAAAATGGACCGCGCGCGATGCCCCTCCCAACCCCCAAG
GAAACCCGGACGATTTCCCCAACAAATCCAACGATACAGAACCCACCAAA
CAGCCGCCCGAACAACCCAAATCTTCTGACCCACAAACACCGGAGCCTCC
AAACGTCCCCTCTGCTCTATACGAACAACAGCAACGCGCCTTCCAGCAAC
AGCAGCAATACTCTCAACCCCCACCACAACCCCAAACCCAGCCCTCACCT
CCCTCCTCCTCCGCCGGCTGCAAAATCTTTGTGGGCGGCCTCTCCTGGGA
GACTGATGAACAGTCACTGCGCGCTTACTTTGAGCAGATAGGAACCGTAC
TGGACTGCGTTATCATGCGCGATCGCCACACCGGCCATCCACGCGGCTTT
GGCTTTGTCACTTTTGCCGATGAAGAcgccgccgccgccgccgcctcgcg
ccgccACGATTTGGATGGCCGTCAAGTTGAGGCTAAACGAGCCGTCCCGA
GGAGCGAAGGTTCCTCTACATCCGCTCCCACCCAATCCGCTTCTTTCACC
GCTGCCCCGCGCGGCATGCGCTATAGCGAGGGTCCTTCTCAAGGCGCCCC
GCATCGTGCACACCACACCACCAAGTGCAAGGTGTTTGTGGGCGGTCTGC
CGTCTGGCTGCGGCGGCGACGAGTTTCGCAACTACTTTTCGCGATATGGA
GAGGTTGTCGATGCGCAAGTCATGATCGACCACAATACTGGCAACTCGCG
AGGGTTTGGATTTGTCACGTTTGCAAACGAGGCCACTGTTAATACGGTGG
TCGGCCCAGGAAAATCAAACACGGACCATGAGATAATGGGCAAATGTGTT
GAAGTGAAGAGAGCGGAGCCCAAAGGTGCATCCCAAGATAGAAGACATAA
TCGAGATAGCTACAGTCAAGGAGGCGGtagagccggcggcagcacttcac
agaacgaggcgctgccgcactcgggtgccaatggcagcggagctaatgcc
gctgctgccgccgccgcagcttactacagcaattatccggcatcgctcgc
cgagcagtatggcgcgtactacaataacccccaatggcagcagtattacg
ctgcgatgggttacaacttcaacttcccgcagagttataatccgtaccag
cagtatttgcaagcgtacatgaacacacaagcttcagctaatggcgctgg
cggtagcgcgggtatgcctgccaatgccgcctcgccaaacgctccgggcg
ccggaggtaagctttcatttgtattaccattagcgagcgagcgcatctgt
ttggactttgaagagagaaagatttgtttattAATGAGTGTGACAAACAG
CTTTGGCTGCTTGTTTAGCCGAGCTGTGTGTAAGCTCCACTTGTTTGCCC
TTATTTCGCAGAGATGCTTCCGTAAGATGGTATCGTTATTTCTGAATCAG
GATCGAATACTAACCAAGATGTTTTTGCTGTTGTGCTGTTACTTTCTTtt
tgttttgtatgtctgttatttgattgttgttgtgtgttGCTTCCTGAAAT
GACATTCTACACTGATTGTTTGTTAATGCTTGAATAACTTATACTGCTCT
TCACGTGACAGGATATGACAACTCCCATGGATCAGGACGATAtggcggca
gcggtggacacggtgggggccatggcggtgggcatggcggtgggcatggc
AGCGAAATAG
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Coding sequence (CDS) from alignment at tig00000010_pilon:1472511..1474270+

>Gchil3933.t1 ID=Gchil3933.t1|Name=Gchil3933.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1074bp|location=Sequence derived from alignment at tig00000010_pilon:1472511..1474270+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAACTCTACACCCACCGCAGGTCGACGGCACCCCATCTCACGATCA
AGAACCTTCCGAAAAATGGACCGCGCGCGATGCCCCTCCCAACCCCCAAG
GAAACCCGGACGATTTCCCCAACAAATCCAACGATACAGAACCCACCAAA
CAGCCGCCCGAACAACCCAAATCTTCTGACCCACAAACACCGGAGCCTCC
AAACGTCCCCTCTGCTCTATACGAACAACAGCAACGCGCCTTCCAGCAAC
AGCAGCAATACTCTCAACCCCCACCACAACCCCAAACCCAGCCCTCACCT
CCCTCCTCCTCCGCCGGCTGCAAAATCTTTGTGGGCGGCCTCTCCTGGGA
GACTGATGAACAGTCACTGCGCGCTTACTTTGAGCAGATAGGAACCGTAC
TGGACTGCGTTATCATGCGCGATCGCCACACCGGCCATCCACGCGGCTTT
GGCTTTGTCACTTTTGCCGATGAAGAcgccgccgccgccgccgcctcgcg
ccgccACGATTTGGATGGCCGTCAAGTTGAGGCTAAACGAGCCGTCCCGA
GGAGCGAAGGTTCCTCTACATCCGCTCCCACCCAATCCGCTTCTTTCACC
GCTGCCCCGCGCGGCATGCGCTATAGCGAGGGTCCTTCTCAAGGCGCCCC
GCATCGTGCACACCACACCACCAAGTGCAAGGTGTTTGTGGGCGGTCTGC
CGTCTGGCTGCGGCGGCGACGAGTTTCGCAACTACTTTTCGCGATATGGA
GAGGTTGTCGATGCGCAAGTCATGATCGACCACAATACTGGCAACTCGCG
AGGGTTTGGATTTGTCACGTTTGCAAACGAGGCCACTGTTAATACGGTGG
TCGGCCCAGGAAAATCAAACACGGACCATGAGATAATGGGCAAATGTGTT
GAAGTGAAGAGAGCGGAGCCCAAAGcgcgggtatgcctgccaatgccgcc
tcgccaaacgctccgggcgccggagGATATGACAACTCCCATGGATCAGG
ACGATAtggcggcagcggtggacacggtgggggccatggcggtgggcatg
gcggtgggcatggcAGCGAAATAG
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