Gchil4272.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4272.t1
Unique Name	Gchil4272.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	300

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:1787395..1788294 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMT244CT
PFAMs	PspA_IM30
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03969
GOs	GO:0000229,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0006996,GO:0008150,GO:0009295,GO:0009507,GO:0009508,GO:0009526,GO:0009528,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009668,GO:0009706,GO:0009941,GO:0009987,GO:0010027,GO:0016020,GO:0016043,GO:0016050,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042170,GO:0042646,GO:0042651,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0061024,GO:0071840
Evalue	1.46e-76
EggNOG OGs	COG1842@1\|root,2QSHK@2759\|Eukaryota
Description	thylakoid membrane organization
COG category	KT
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4272	Gchil4272	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 1787395..1788294 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4272.t1.stop1	Gchil4272.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 1787395..1787397 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4272.t1.CDS1	Gchil4272.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 1787395..1788294 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4272.t1.exon1	Gchil4272.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 1787395..1788294 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4272.t1.start1	Gchil4272.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 1788292..1788294 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4272.t1	Gchil4272.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 1787395..1788294 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:1787395..1788294-
coding sequence from alignment at tig00004373_pilon:1787395..1788294-

mRNA sequence

>Gchil4272.t1 ID=Gchil4272.t1|Name=Gchil4272.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=300bp
MSSAYVLPIRAAYPFRPLTSSSFTGRKVKTMYTNPPVRRVRPQHSPLTTI
QMNLIDRFFRVVRANLNQVVSGMEDPEKVLKQTVTDMQNDLVKVRQAYAE
VSASLKRIERQRDQASTTSVEWKKRAQLALQKGEEDLAREALTRKKTADE
QEVSLSKQIGGMKANVDKLYTSMQQLESKISEAKSKKDQYVARARTAKTS
QKVNDMLSNVATSGGLEAFERMKAKVEELEVKADVSRELSLGGSVDASLE
GKFKALESDSIDDELQKMKNKLSGTSPFQLKGSYDPEVEGELEKMKKNM*

spliced messenger RNA

>Gchil4272.t1 ID=Gchil4272.t1|Name=Gchil4272.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00004373_pilon:1787395..1788294- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTCGGCTTATGTTCTTCCTATTCGGGCAGCGTATCCGTTTCGTCC
TTTGACCTCGTCGTCCTTCACCGGTCGTAAAGTGAAAACGATGTACACAA
ATCCTCCGGTACGCCGTGTACGGCCGCAACACTCGCCTCTCACAACTATT
CAAATGAATTTGATCGACAGGTTCTTTCGAGTAGTTCGTGCCAATCTGAA
TCAGGTTGTCTCGGGTATGGAAGACCCCGAGAAGGTTCTGAAGCAAACCG
TCACGGATATGCAAAATGATCTCGTTAAAGTCCGCCAGGCTTATGCAGAG
GTCAGTGCATCGTTGAAGAGAATCGAACGCCAGCGTGATCAAGCATCTAC
AACTAGCGTCGAGTGGAAAAAGAGGGCCCAATTGGCTTTGCAGAAGGGCG
AAGAGGATCTTGCAAGAGAGGCACTGACGCGAAAAAAAACAGCGGATGAA
CAGGAGGTCAGTCTATCTAAACAGATAGGAGGTATGAAAGCTAACGTAGA
CAAGCTTTACACATCGATGCAACAACTCGAGTCCAAAATCAGCGAAGCCA
AGTCCAAGAAGGACCAATATGTTGCGAGAGCAAGAACGGCTAAAACTAGT
CAAAAGGTGAATGACATGCTCAGTAATGTGGCAACTAGTGGTGGTCTTGA
AGCATTCGAACGAATGAAAGCAAAGGTTGAGGAATTGGAGGTGAAAGCAG
ACGTTTCTCGGGAACTGTCATTAGGGGGGTCCGTCGATGCCAGTCTTGAA
GGCAAGTTTAAAGCCCTTGAAAGCGATTCCATTGATGACGAGTTGCAGAA
AATGAAGAATAAGCTTTCTGGGACATCACCATTTCAGCTAAAGGGTAGTT
ATGATCCCGAGGTCGAGGGTGAGCTTGAGAAAATGAAGAAAAATATGTGA

protein sequence of Gchil4272.t1

>Gchil4272.t1 ID=Gchil4272.t1|Name=Gchil4272.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=300bp
MSSAYVLPIRAAYPFRPLTSSSFTGRKVKTMYTNPPVRRVRPQHSPLTTI
QMNLIDRFFRVVRANLNQVVSGMEDPEKVLKQTVTDMQNDLVKVRQAYAE
VSASLKRIERQRDQASTTSVEWKKRAQLALQKGEEDLAREALTRKKTADE
QEVSLSKQIGGMKANVDKLYTSMQQLESKISEAKSKKDQYVARARTAKTS
QKVNDMLSNVATSGGLEAFERMKAKVEELEVKADVSRELSLGGSVDASLE
GKFKALESDSIDDELQKMKNKLSGTSPFQLKGSYDPEVEGELEKMKKNM*

mRNA from alignment at tig00004373_pilon:1787395..1788294-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4272.t1 ID=Gchil4272.t1|Name=Gchil4272.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00004373_pilon:1787395..1788294- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTTCGGCTTATGTTCTTCCTATTCGGGCAGCGTATCCGTTTCGTCC
TTTGACCTCGTCGTCCTTCACCGGTCGTAAAGTGAAAACGATGTACACAA
ATCCTCCGGTACGCCGTGTACGGCCGCAACACTCGCCTCTCACAACTATT
CAAATGAATTTGATCGACAGGTTCTTTCGAGTAGTTCGTGCCAATCTGAA
TCAGGTTGTCTCGGGTATGGAAGACCCCGAGAAGGTTCTGAAGCAAACCG
TCACGGATATGCAAAATGATCTCGTTAAAGTCCGCCAGGCTTATGCAGAG
GTCAGTGCATCGTTGAAGAGAATCGAACGCCAGCGTGATCAAGCATCTAC
AACTAGCGTCGAGTGGAAAAAGAGGGCCCAATTGGCTTTGCAGAAGGGCG
AAGAGGATCTTGCAAGAGAGGCACTGACGCGAAAAAAAACAGCGGATGAA
CAGGAGGTCAGTCTATCTAAACAGATAGGAGGTATGAAAGCTAACGTAGA
CAAGCTTTACACATCGATGCAACAACTCGAGTCCAAAATCAGCGAAGCCA
AGTCCAAGAAGGACCAATATGTTGCGAGAGCAAGAACGGCTAAAACTAGT
CAAAAGGTGAATGACATGCTCAGTAATGTGGCAACTAGTGGTGGTCTTGA
AGCATTCGAACGAATGAAAGCAAAGGTTGAGGAATTGGAGGTGAAAGCAG
ACGTTTCTCGGGAACTGTCATTAGGGGGGTCCGTCGATGCCAGTCTTGAA
GGCAAGTTTAAAGCCCTTGAAAGCGATTCCATTGATGACGAGTTGCAGAA
AATGAAGAATAAGCTTTCTGGGACATCACCATTTCAGCTAAAGGGTAGTT
ATGATCCCGAGGTCGAGGGTGAGCTTGAGAAAATGAAGAAAAATATGTGA

Coding sequence (CDS) from alignment at tig00004373_pilon:1787395..1788294-

>Gchil4272.t1 ID=Gchil4272.t1|Name=Gchil4272.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=900bp|location=Sequence derived from alignment at tig00004373_pilon:1787395..1788294- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTTCGGCTTATGTTCTTCCTATTCGGGCAGCGTATCCGTTTCGTCC
TTTGACCTCGTCGTCCTTCACCGGTCGTAAAGTGAAAACGATGTACACAA
ATCCTCCGGTACGCCGTGTACGGCCGCAACACTCGCCTCTCACAACTATT
CAAATGAATTTGATCGACAGGTTCTTTCGAGTAGTTCGTGCCAATCTGAA
TCAGGTTGTCTCGGGTATGGAAGACCCCGAGAAGGTTCTGAAGCAAACCG
TCACGGATATGCAAAATGATCTCGTTAAAGTCCGCCAGGCTTATGCAGAG
GTCAGTGCATCGTTGAAGAGAATCGAACGCCAGCGTGATCAAGCATCTAC
AACTAGCGTCGAGTGGAAAAAGAGGGCCCAATTGGCTTTGCAGAAGGGCG
AAGAGGATCTTGCAAGAGAGGCACTGACGCGAAAAAAAACAGCGGATGAA
CAGGAGGTCAGTCTATCTAAACAGATAGGAGGTATGAAAGCTAACGTAGA
CAAGCTTTACACATCGATGCAACAACTCGAGTCCAAAATCAGCGAAGCCA
AGTCCAAGAAGGACCAATATGTTGCGAGAGCAAGAACGGCTAAAACTAGT
CAAAAGGTGAATGACATGCTCAGTAATGTGGCAACTAGTGGTGGTCTTGA
AGCATTCGAACGAATGAAAGCAAAGGTTGAGGAATTGGAGGTGAAAGCAG
ACGTTTCTCGGGAACTGTCATTAGGGGGGTCCGTCGATGCCAGTCTTGAA
GGCAAGTTTAAAGCCCTTGAAAGCGATTCCATTGATGACGAGTTGCAGAA
AATGAAGAATAAGCTTTCTGGGACATCACCATTTCAGCTAAAGGGTAGTT
ATGATCCCGAGGTCGAGGGTGAGCTTGAGAAAATGAAGAAAAATATGTGA