Gchil4363.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4363.t1
Unique Name	Gchil4363.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	745

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:2348344..2350578 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703235.1
Preferred name	AMPD2
PFAMs	A_deaminase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00477
KEGG ko	ko:K01490
KEGG Reaction	R00181
KEGG Pathway	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue	2.21e-269
EggNOG OGs	COG1816@1\|root,KOG1096@2759\|Eukaryota
EC	3.5.4.6
Description	adenosine-phosphate deaminase activity
COG category	F
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4363	Gchil4363	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 2348344..2350578 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4363.t1.start1	Gchil4363.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 2348344..2348346 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4363.t1.CDS1	Gchil4363.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 2348344..2350578 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4363.t1.exon1	Gchil4363.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 2348344..2350578 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4363.t1.stop1	Gchil4363.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 2350576..2350578 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4363.t1	Gchil4363.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 2348344..2350578 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:2348344..2350578+
coding sequence from alignment at tig00004373_pilon:2348344..2350578+

mRNA sequence

>Gchil4363.t1 ID=Gchil4363.t1|Name=Gchil4363.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=745bp
MHTPHFNPTASASMLSSSIPTVSDEDTLATATLDHRRSSMRSAAANFKRL
APQSPCQYRRFSIAPASRSPQEHYGATNLRHAIALRERWVYRRTVPEWSN
CARCTPLVDNQLALVPPPYDPFNLDVSTPTSHVVRWHQGVVNVFADEDAA
SSDQPQIKGTTLSHFANDLATLSSILNDPDTRSFCHRRLMLLQERFNMHI
LLNENQERLAQIAVPHRDFYNVSKVDVHVHHSSMANQKHLLTFIKRKVKK
DGNEKVLANREDPHGEPLTLTQVFESLNLLPHELSVDTLDVHADNTTFHR
FDRFNLKYNPFGQSRLREIFMKTDNYIEGKYLAELTHEVFSDLRSTKYQK
SEYRVSIYGRDIKEWDKLGAWFYDHKIFSPNVRWLIQIPRLYSIYKEMGR
LNSFQDMLDNIFNPIFEATVDPTSHPKVASLLQQIVAFDSVDDESQPQPR
VDLRKCGPPGTWDSGVNPPYSYYSFFIYSNLAVLNQLRESKGLNTFTYRP
HAGEAGDVEHLATSFLLAHGINHGLNLKKSPVLQYLFYVTQIGVAMSPLS
NNALFCEIGKNPLPIFFKRGLNVTLSTDDPLQFAFTREPLMEEYSVAAQV
WKLSNTDLCELARNSVLQSGFEACVKASWLGATWYLSGPAGNDISKTNVP
SIRLCHRYETLLEELQVIYEGQVPDHIHVLPTFSHKAGARNTKTRSDVQE
LHVPFAVETMITNSNEGWYPEGCEHRFSEAGLSDDEEDIRVDVE*

spliced messenger RNA

>Gchil4363.t1 ID=Gchil4363.t1|Name=Gchil4363.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2235bp|location=Sequence derived from alignment at tig00004373_pilon:2348344..2350578+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATACGCCGCACTTCAATCCTACCGCGTCTGCTTCCATGCTCTCTTC
GTCCATTCCAACTGTATCCGATGAGGATACGCTTGCAACAGCCACGCTAG
ACCATCGCCGTTCCTCAATGCGCTCCGCAGCCGCAAATTTTAAGAGACTT
GCGCCGCAATCCCCCTGTCAATACCGTCGGTTTTCCATTGCCCCTGCTTC
TCGCTCTCCACAAGAGCATTATGGAGCCACCAACTTACGCCATGCAATCG
CTCTTCGAGAGCGCTGGGTGTATCGGCGAACAGTCCCCGAATGGAGCAAC
TGTGCGAGGTGCACACCTCTTGTTGACAATCAACTCGCGTTGGTTCCGCC
GCCTTATGACCCGTTTAACCTCGACGTATCAACTCCTACTTCCCATGTCG
TTCGCTGGCACCAAGGCGTTGTCAATGTGTTTGCTGATGAAGATGCTGCT
TCGAGCGACCAACCACAAATTAAGGGCACCACGCTTTCGCACTTTGCCAA
CGACCTCGCCACCCTGTCTTCCATATTGAATGACCCGGATACCCGCTCGT
TTTGTCATCGAAGGTTGATGTTGTTGCAAGAACGTTTCAATATGCACATA
CTGCTCAATGAAAACCAGGAACGACTGGCGCAGATTGCCGTCCCACACCG
TGACTTTTACAACGTCAGCAAGGTTGACGTGCATGTTCATCACTCGTCAA
TGGCCAATCAAAAGCATTTGCTCACTTTCATCAAGCGAAAAGTGAAGAAA
GATGGCAATGAGAAGGTGCTGGCAAACAGAGAAGATCCTCACGGCGAACC
ATTAACCCTCACACAAGTTTTCGAGTCTCTAAACCTTCTACCACACGAAC
TAAGCGTAGATACTCTTGACGTACATGCCGATAACACAACTTTTCACAGG
TTTGATCGCTTCAACCTCAAGTACAATCCGTTCGGACAGTCTAGACTGCG
CGAGATTTTCATGAAGACCGACAATTACATCGAGGGCAAGTATCTGGCAG
AGCTCACGCACGAGGTATTTTCCGACCTCCGCAGTACAAAGTACCAAAAA
AGCGAGTATCGTGTTAGCATATACGGCAGGGATATCAAGGAGTGGGATAA
ACTTGGAGCATGGTTCTACGACCACAAGATATTCAGTCCTAATGTACGTT
GGCTCATTCAAATTCCACGTCTGTATAGTATCTACAAGGAGATGGGAAGA
CTTAATTCGTTCCAAGACATGTTGGACAACATATTTAACCCTATTTTTGA
AGCCACTGTGGACCCGACATCACACCCCAAAGTCGCAAGCCTTTTGCAGC
AAATCGTCGCATTTGATTCTGTGGATGATGAGAGTCAACCACAACCTAGG
GTGGATTTGAGGAAATGTGGACCCCCTGGAACTTGGGATAGCGGCGTAAA
TCCACCGTACAGTTATTACTCGTTCTTCATTTACAGCAATCTGGCTGTGT
TAAATCAACTGCGAGAGTCCAAAGGTCTGAATACCTTTACATATCGTCCA
CACGCAGGCGAGGCTGGCGACGTTGAGCATCTTGCGACATCATTTCTTCT
GGCTCATGGCATTAATCATGGATTGAATCTCAAAAAGAGTCCGGTGTTAC
AGTACTTGTTCTATGTCACGCAGATAGGAGTTGCAATGAGCCCGTTAAGT
AATAACGCCCTATTCTGTGAGATAGGCAAGAACCCTTTACCAATCTTCTT
CAAAAGGGGTTTGAACGTAACGTTATCAACGGATGATCCACTACAGTTTG
CCTTCACTCGCGAGCCCCTCATGGAGGAGTATTCAGTTGCTGCTCAAGTA
TGGAAGCTTTCAAACACGGATTTGTGTGAACTTGCGAGAAACTCTGTGTT
GCAGTCTGGGTTCGAAGCGTGTGTCAAAGCCAGCTGGCTGGGGGCAACTT
GGTATTTGAGCGGTCCAGCAGGAAATGATATTTCGAAGACAAATGTTCCA
TCAATTCGACTTTGCCACCGCTACGAGACACTTTTGGAAGAACTCCAAGT
AATATATGAGGGCCAGGTGCCGGACCATATACATGTCTTGCCGACGTTTT
CGCACAAAGCAGGCGCGAGGAACACGAAAACTAGATCTGATGTGCAAGAA
CTTCATGTTCCCTTTGCTGTAGAAACCATGATTACCAACAGTAACGAAGG
ATGGTATCCAGAAGGTTGTGAGCACAGATTTAGCGAAGCCGGACTGTCAG
ACGATGAGGAAGACATTAGGGTAGACGTGGAGTAG

protein sequence of Gchil4363.t1

>Gchil4363.t1 ID=Gchil4363.t1|Name=Gchil4363.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=745bp
MHTPHFNPTASASMLSSSIPTVSDEDTLATATLDHRRSSMRSAAANFKRL
APQSPCQYRRFSIAPASRSPQEHYGATNLRHAIALRERWVYRRTVPEWSN
CARCTPLVDNQLALVPPPYDPFNLDVSTPTSHVVRWHQGVVNVFADEDAA
SSDQPQIKGTTLSHFANDLATLSSILNDPDTRSFCHRRLMLLQERFNMHI
LLNENQERLAQIAVPHRDFYNVSKVDVHVHHSSMANQKHLLTFIKRKVKK
DGNEKVLANREDPHGEPLTLTQVFESLNLLPHELSVDTLDVHADNTTFHR
FDRFNLKYNPFGQSRLREIFMKTDNYIEGKYLAELTHEVFSDLRSTKYQK
SEYRVSIYGRDIKEWDKLGAWFYDHKIFSPNVRWLIQIPRLYSIYKEMGR
LNSFQDMLDNIFNPIFEATVDPTSHPKVASLLQQIVAFDSVDDESQPQPR
VDLRKCGPPGTWDSGVNPPYSYYSFFIYSNLAVLNQLRESKGLNTFTYRP
HAGEAGDVEHLATSFLLAHGINHGLNLKKSPVLQYLFYVTQIGVAMSPLS
NNALFCEIGKNPLPIFFKRGLNVTLSTDDPLQFAFTREPLMEEYSVAAQV
WKLSNTDLCELARNSVLQSGFEACVKASWLGATWYLSGPAGNDISKTNVP
SIRLCHRYETLLEELQVIYEGQVPDHIHVLPTFSHKAGARNTKTRSDVQE
LHVPFAVETMITNSNEGWYPEGCEHRFSEAGLSDDEEDIRVDVE*

mRNA from alignment at tig00004373_pilon:2348344..2350578+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4363.t1 ID=Gchil4363.t1|Name=Gchil4363.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2235bp|location=Sequence derived from alignment at tig00004373_pilon:2348344..2350578+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATACGCCGCACTTCAATCCTACCGCGTCTGCTTCCATGCTCTCTTC
GTCCATTCCAACTGTATCCGATGAGGATACGCTTGCAACAGCCACGCTAG
ACCATCGCCGTTCCTCAATGCGCTCCGCAGCCGCAAATTTTAAGAGACTT
GCGCCGCAATCCCCCTGTCAATACCGTCGGTTTTCCATTGCCCCTGCTTC
TCGCTCTCCACAAGAGCATTATGGAGCCACCAACTTACGCCATGCAATCG
CTCTTCGAGAGCGCTGGGTGTATCGGCGAACAGTCCCCGAATGGAGCAAC
TGTGCGAGGTGCACACCTCTTGTTGACAATCAACTCGCGTTGGTTCCGCC
GCCTTATGACCCGTTTAACCTCGACGTATCAACTCCTACTTCCCATGTCG
TTCGCTGGCACCAAGGCGTTGTCAATGTGTTTGCTGATGAAGATGCTGCT
TCGAGCGACCAACCACAAATTAAGGGCACCACGCTTTCGCACTTTGCCAA
CGACCTCGCCACCCTGTCTTCCATATTGAATGACCCGGATACCCGCTCGT
TTTGTCATCGAAGGTTGATGTTGTTGCAAGAACGTTTCAATATGCACATA
CTGCTCAATGAAAACCAGGAACGACTGGCGCAGATTGCCGTCCCACACCG
TGACTTTTACAACGTCAGCAAGGTTGACGTGCATGTTCATCACTCGTCAA
TGGCCAATCAAAAGCATTTGCTCACTTTCATCAAGCGAAAAGTGAAGAAA
GATGGCAATGAGAAGGTGCTGGCAAACAGAGAAGATCCTCACGGCGAACC
ATTAACCCTCACACAAGTTTTCGAGTCTCTAAACCTTCTACCACACGAAC
TAAGCGTAGATACTCTTGACGTACATGCCGATAACACAACTTTTCACAGG
TTTGATCGCTTCAACCTCAAGTACAATCCGTTCGGACAGTCTAGACTGCG
CGAGATTTTCATGAAGACCGACAATTACATCGAGGGCAAGTATCTGGCAG
AGCTCACGCACGAGGTATTTTCCGACCTCCGCAGTACAAAGTACCAAAAA
AGCGAGTATCGTGTTAGCATATACGGCAGGGATATCAAGGAGTGGGATAA
ACTTGGAGCATGGTTCTACGACCACAAGATATTCAGTCCTAATGTACGTT
GGCTCATTCAAATTCCACGTCTGTATAGTATCTACAAGGAGATGGGAAGA
CTTAATTCGTTCCAAGACATGTTGGACAACATATTTAACCCTATTTTTGA
AGCCACTGTGGACCCGACATCACACCCCAAAGTCGCAAGCCTTTTGCAGC
AAATCGTCGCATTTGATTCTGTGGATGATGAGAGTCAACCACAACCTAGG
GTGGATTTGAGGAAATGTGGACCCCCTGGAACTTGGGATAGCGGCGTAAA
TCCACCGTACAGTTATTACTCGTTCTTCATTTACAGCAATCTGGCTGTGT
TAAATCAACTGCGAGAGTCCAAAGGTCTGAATACCTTTACATATCGTCCA
CACGCAGGCGAGGCTGGCGACGTTGAGCATCTTGCGACATCATTTCTTCT
GGCTCATGGCATTAATCATGGATTGAATCTCAAAAAGAGTCCGGTGTTAC
AGTACTTGTTCTATGTCACGCAGATAGGAGTTGCAATGAGCCCGTTAAGT
AATAACGCCCTATTCTGTGAGATAGGCAAGAACCCTTTACCAATCTTCTT
CAAAAGGGGTTTGAACGTAACGTTATCAACGGATGATCCACTACAGTTTG
CCTTCACTCGCGAGCCCCTCATGGAGGAGTATTCAGTTGCTGCTCAAGTA
TGGAAGCTTTCAAACACGGATTTGTGTGAACTTGCGAGAAACTCTGTGTT
GCAGTCTGGGTTCGAAGCGTGTGTCAAAGCCAGCTGGCTGGGGGCAACTT
GGTATTTGAGCGGTCCAGCAGGAAATGATATTTCGAAGACAAATGTTCCA
TCAATTCGACTTTGCCACCGCTACGAGACACTTTTGGAAGAACTCCAAGT
AATATATGAGGGCCAGGTGCCGGACCATATACATGTCTTGCCGACGTTTT
CGCACAAAGCAGGCGCGAGGAACACGAAAACTAGATCTGATGTGCAAGAA
CTTCATGTTCCCTTTGCTGTAGAAACCATGATTACCAACAGTAACGAAGG
ATGGTATCCAGAAGGTTGTGAGCACAGATTTAGCGAAGCCGGACTGTCAG
ACGATGAGGAAGACATTAGGGTAGACGTGGAGTAG

Coding sequence (CDS) from alignment at tig00004373_pilon:2348344..2350578+

>Gchil4363.t1 ID=Gchil4363.t1|Name=Gchil4363.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2235bp|location=Sequence derived from alignment at tig00004373_pilon:2348344..2350578+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATACGCCGCACTTCAATCCTACCGCGTCTGCTTCCATGCTCTCTTC
GTCCATTCCAACTGTATCCGATGAGGATACGCTTGCAACAGCCACGCTAG
ACCATCGCCGTTCCTCAATGCGCTCCGCAGCCGCAAATTTTAAGAGACTT
GCGCCGCAATCCCCCTGTCAATACCGTCGGTTTTCCATTGCCCCTGCTTC
TCGCTCTCCACAAGAGCATTATGGAGCCACCAACTTACGCCATGCAATCG
CTCTTCGAGAGCGCTGGGTGTATCGGCGAACAGTCCCCGAATGGAGCAAC
TGTGCGAGGTGCACACCTCTTGTTGACAATCAACTCGCGTTGGTTCCGCC
GCCTTATGACCCGTTTAACCTCGACGTATCAACTCCTACTTCCCATGTCG
TTCGCTGGCACCAAGGCGTTGTCAATGTGTTTGCTGATGAAGATGCTGCT
TCGAGCGACCAACCACAAATTAAGGGCACCACGCTTTCGCACTTTGCCAA
CGACCTCGCCACCCTGTCTTCCATATTGAATGACCCGGATACCCGCTCGT
TTTGTCATCGAAGGTTGATGTTGTTGCAAGAACGTTTCAATATGCACATA
CTGCTCAATGAAAACCAGGAACGACTGGCGCAGATTGCCGTCCCACACCG
TGACTTTTACAACGTCAGCAAGGTTGACGTGCATGTTCATCACTCGTCAA
TGGCCAATCAAAAGCATTTGCTCACTTTCATCAAGCGAAAAGTGAAGAAA
GATGGCAATGAGAAGGTGCTGGCAAACAGAGAAGATCCTCACGGCGAACC
ATTAACCCTCACACAAGTTTTCGAGTCTCTAAACCTTCTACCACACGAAC
TAAGCGTAGATACTCTTGACGTACATGCCGATAACACAACTTTTCACAGG
TTTGATCGCTTCAACCTCAAGTACAATCCGTTCGGACAGTCTAGACTGCG
CGAGATTTTCATGAAGACCGACAATTACATCGAGGGCAAGTATCTGGCAG
AGCTCACGCACGAGGTATTTTCCGACCTCCGCAGTACAAAGTACCAAAAA
AGCGAGTATCGTGTTAGCATATACGGCAGGGATATCAAGGAGTGGGATAA
ACTTGGAGCATGGTTCTACGACCACAAGATATTCAGTCCTAATGTACGTT
GGCTCATTCAAATTCCACGTCTGTATAGTATCTACAAGGAGATGGGAAGA
CTTAATTCGTTCCAAGACATGTTGGACAACATATTTAACCCTATTTTTGA
AGCCACTGTGGACCCGACATCACACCCCAAAGTCGCAAGCCTTTTGCAGC
AAATCGTCGCATTTGATTCTGTGGATGATGAGAGTCAACCACAACCTAGG
GTGGATTTGAGGAAATGTGGACCCCCTGGAACTTGGGATAGCGGCGTAAA
TCCACCGTACAGTTATTACTCGTTCTTCATTTACAGCAATCTGGCTGTGT
TAAATCAACTGCGAGAGTCCAAAGGTCTGAATACCTTTACATATCGTCCA
CACGCAGGCGAGGCTGGCGACGTTGAGCATCTTGCGACATCATTTCTTCT
GGCTCATGGCATTAATCATGGATTGAATCTCAAAAAGAGTCCGGTGTTAC
AGTACTTGTTCTATGTCACGCAGATAGGAGTTGCAATGAGCCCGTTAAGT
AATAACGCCCTATTCTGTGAGATAGGCAAGAACCCTTTACCAATCTTCTT
CAAAAGGGGTTTGAACGTAACGTTATCAACGGATGATCCACTACAGTTTG
CCTTCACTCGCGAGCCCCTCATGGAGGAGTATTCAGTTGCTGCTCAAGTA
TGGAAGCTTTCAAACACGGATTTGTGTGAACTTGCGAGAAACTCTGTGTT
GCAGTCTGGGTTCGAAGCGTGTGTCAAAGCCAGCTGGCTGGGGGCAACTT
GGTATTTGAGCGGTCCAGCAGGAAATGATATTTCGAAGACAAATGTTCCA
TCAATTCGACTTTGCCACCGCTACGAGACACTTTTGGAAGAACTCCAAGT
AATATATGAGGGCCAGGTGCCGGACCATATACATGTCTTGCCGACGTTTT
CGCACAAAGCAGGCGCGAGGAACACGAAAACTAGATCTGATGTGCAAGAA
CTTCATGTTCCCTTTGCTGTAGAAACCATGATTACCAACAGTAACGAAGG
ATGGTATCCAGAAGGTTGTGAGCACAGATTTAGCGAAGCCGGACTGTCAG
ACGATGAGGAAGACATTAGGGTAGACGTGGAGTAG