Gchil4130.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4130.t1
Unique NameGchil4130.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length342
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:925469..926494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703726.1
Preferred nameCWC25
PFAMsCWC25,Cir_N
Max annot lvl2759|Eukaryota
KEGG koko:K07203,ko:K12182
KEGG Pathwayko01521,ko01522,ko04012,ko04066,ko04072,ko04136,ko04138,ko04139,ko04140,ko04144,ko04145,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map04012,map04066,map04072,map04136,map04138,map04139,map04140,map04144,map04145,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00408
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007049,GO:0007275,GO:0007530,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018992,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0040021,GO:0040022,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0046483,GO:0048856,GO:0051321,GO:0070013,GO:0071704,GO:0090304,GO:1901360,GO:1990904
Evalue4.74e-22
EggNOG OGsKOG3869@1|root,KOG3869@2759|Eukaryota
EC2.7.11.1
DescriptionRNA splicing
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4130Gchil4130Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 925469..926494 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4130.t1.start1Gchil4130.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 925469..925471 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4130.t1.CDS1Gchil4130.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 925469..926494 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4130.t1.exon1Gchil4130.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 925469..926494 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4130.t1.stop1Gchil4130.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 926492..926494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4130.t1Gchil4130.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 925469..926494 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4130.t1 ID=Gchil4130.t1|Name=Gchil4130.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=342bp
MSALKFLGKKSWHTGNIKNNEKVWLKEQEEAKEKSRIEELRKQIEEERKL
KEAEDLEVKSGRLDPEQLLKRRRINWMYEFEPSRNHDSEKVVNDKEREEI
LTGKKDVTLETLENEKEKAGPSMIDLENKMREDPLLDIKRQRMQAAKVQH
LRKLYGVQDPHSSDTTQKMKRKQYRQAVREERRRRREARQPLRSEMSAYG
RSYKDAEDVPHPLKTKTTETLQRNSVPFEEKRGEYGLRIPEGSRTAFAKK
THTPCRGRFDQRPPQPPIPSRSRRRFDQPPGFAASQEKKTTNLNRKDKER
ILEQMRQDAEEIEIQRKIRTGTFESDCKAGGFDSRKRKFSE*
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spliced messenger RNA

>Gchil4130.t1 ID=Gchil4130.t1|Name=Gchil4130.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00004373_pilon:925469..926494+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCATTGAAATTCTTGGGGAAGAAGTCATGGCATACAGGAAATAT
CAAGAACAACGAGAAGGTATGGCTCAAGGAACAAGAGGAGGCAAAAGAGA
AGTCGCGCATTGAAGAACTGCGAAAACAAATTGAGGAAGAGCGAAAGCTT
AAGGAGGCTGAAGACTTGGAAGTAAAATCAGGCCGCCTAGACCCTGAACA
GCTTTTAAAACGTCGCCGCATTAACTGGATGTACGAATTTGAGCCTAGCC
GGAACCACGACTCGGAAAAGGTTGTTAACGACAAGGAGCGTGAGGAAATT
CTAACTGGAAAGAAAGACGTAACGCTTGAAACACTTGAAAACGAAAAAGA
GAAAGCGGGACCATCAATGATAGATCTTGAAAATAAGATGCGCGAGGACC
CGCTGCTCGATATTAAGCGACAGAGAATGCAAGCAGCGAAAGTACAACAC
CTGCGCAAACTTTATGGAGTCCAGGACCCGCATAGTTCTGACACCACACA
GAAAATGAAGCGCAAGCAGTATCGCCAGGCCGTCCGAGAAGAGCGCCGAA
GAAGGCGCGAAGCACGCCAACCTCTACGGTCTGAAATGTCTGCATACGGC
AGGAGCTACAAAGATGCAGAAGACGTACCTCATCCATTGAAGACAAAAAC
AACTGAGACACTTCAGCGCAATTCTGTCCCGTTTGAAGAGAAGAGAGGCG
AATACGGGCTACGAATACCAGAAGGCAGCCGCACTGCTTTCGCAAAGAAA
ACACATACGCCGTGCAGAGGACGCTTTGATCAGCGCCCACCTCAGCCACC
TATCCCATCACGATCTCGCAGACGCTTTGACCAACCTCCTGGTTTCGCTG
CTAGCCAAGAGAAGAAGACTACAAATCTCAACAGGAAGGATAAAGAAAGA
ATTCTCGAACAAATGCGCCAAGACGCCGAAGAAATTGAAATTCAAAGGAA
GATAAGAACAGGAACATTTGAAAGTGATTGTAAGGCCGGGGGGTTCGACT
CGCGGAAGCGCAAATTCAGCGAATAA
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protein sequence of Gchil4130.t1

>Gchil4130.t1 ID=Gchil4130.t1|Name=Gchil4130.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=342bp
MSALKFLGKKSWHTGNIKNNEKVWLKEQEEAKEKSRIEELRKQIEEERKL
KEAEDLEVKSGRLDPEQLLKRRRINWMYEFEPSRNHDSEKVVNDKEREEI
LTGKKDVTLETLENEKEKAGPSMIDLENKMREDPLLDIKRQRMQAAKVQH
LRKLYGVQDPHSSDTTQKMKRKQYRQAVREERRRRREARQPLRSEMSAYG
RSYKDAEDVPHPLKTKTTETLQRNSVPFEEKRGEYGLRIPEGSRTAFAKK
THTPCRGRFDQRPPQPPIPSRSRRRFDQPPGFAASQEKKTTNLNRKDKER
ILEQMRQDAEEIEIQRKIRTGTFESDCKAGGFDSRKRKFSE*
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mRNA from alignment at tig00004373_pilon:925469..926494+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4130.t1 ID=Gchil4130.t1|Name=Gchil4130.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00004373_pilon:925469..926494+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGCATTGAAATTCTTGGGGAAGAAGTCATGGCATACAGGAAATAT
CAAGAACAACGAGAAGGTATGGCTCAAGGAACAAGAGGAGGCAAAAGAGA
AGTCGCGCATTGAAGAACTGCGAAAACAAATTGAGGAAGAGCGAAAGCTT
AAGGAGGCTGAAGACTTGGAAGTAAAATCAGGCCGCCTAGACCCTGAACA
GCTTTTAAAACGTCGCCGCATTAACTGGATGTACGAATTTGAGCCTAGCC
GGAACCACGACTCGGAAAAGGTTGTTAACGACAAGGAGCGTGAGGAAATT
CTAACTGGAAAGAAAGACGTAACGCTTGAAACACTTGAAAACGAAAAAGA
GAAAGCGGGACCATCAATGATAGATCTTGAAAATAAGATGCGCGAGGACC
CGCTGCTCGATATTAAGCGACAGAGAATGCAAGCAGCGAAAGTACAACAC
CTGCGCAAACTTTATGGAGTCCAGGACCCGCATAGTTCTGACACCACACA
GAAAATGAAGCGCAAGCAGTATCGCCAGGCCGTCCGAGAAGAGCGCCGAA
GAAGGCGCGAAGCACGCCAACCTCTACGGTCTGAAATGTCTGCATACGGC
AGGAGCTACAAAGATGCAGAAGACGTACCTCATCCATTGAAGACAAAAAC
AACTGAGACACTTCAGCGCAATTCTGTCCCGTTTGAAGAGAAGAGAGGCG
AATACGGGCTACGAATACCAGAAGGCAGCCGCACTGCTTTCGCAAAGAAA
ACACATACGCCGTGCAGAGGACGCTTTGATCAGCGCCCACCTCAGCCACC
TATCCCATCACGATCTCGCAGACGCTTTGACCAACCTCCTGGTTTCGCTG
CTAGCCAAGAGAAGAAGACTACAAATCTCAACAGGAAGGATAAAGAAAGA
ATTCTCGAACAAATGCGCCAAGACGCCGAAGAAATTGAAATTCAAAGGAA
GATAAGAACAGGAACATTTGAAAGTGATTGTAAGGCCGGGGGGTTCGACT
CGCGGAAGCGCAAATTCAGCGAATAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:925469..926494+

>Gchil4130.t1 ID=Gchil4130.t1|Name=Gchil4130.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1026bp|location=Sequence derived from alignment at tig00004373_pilon:925469..926494+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGCATTGAAATTCTTGGGGAAGAAGTCATGGCATACAGGAAATAT
CAAGAACAACGAGAAGGTATGGCTCAAGGAACAAGAGGAGGCAAAAGAGA
AGTCGCGCATTGAAGAACTGCGAAAACAAATTGAGGAAGAGCGAAAGCTT
AAGGAGGCTGAAGACTTGGAAGTAAAATCAGGCCGCCTAGACCCTGAACA
GCTTTTAAAACGTCGCCGCATTAACTGGATGTACGAATTTGAGCCTAGCC
GGAACCACGACTCGGAAAAGGTTGTTAACGACAAGGAGCGTGAGGAAATT
CTAACTGGAAAGAAAGACGTAACGCTTGAAACACTTGAAAACGAAAAAGA
GAAAGCGGGACCATCAATGATAGATCTTGAAAATAAGATGCGCGAGGACC
CGCTGCTCGATATTAAGCGACAGAGAATGCAAGCAGCGAAAGTACAACAC
CTGCGCAAACTTTATGGAGTCCAGGACCCGCATAGTTCTGACACCACACA
GAAAATGAAGCGCAAGCAGTATCGCCAGGCCGTCCGAGAAGAGCGCCGAA
GAAGGCGCGAAGCACGCCAACCTCTACGGTCTGAAATGTCTGCATACGGC
AGGAGCTACAAAGATGCAGAAGACGTACCTCATCCATTGAAGACAAAAAC
AACTGAGACACTTCAGCGCAATTCTGTCCCGTTTGAAGAGAAGAGAGGCG
AATACGGGCTACGAATACCAGAAGGCAGCCGCACTGCTTTCGCAAAGAAA
ACACATACGCCGTGCAGAGGACGCTTTGATCAGCGCCCACCTCAGCCACC
TATCCCATCACGATCTCGCAGACGCTTTGACCAACCTCCTGGTTTCGCTG
CTAGCCAAGAGAAGAAGACTACAAATCTCAACAGGAAGGATAAAGAAAGA
ATTCTCGAACAAATGCGCCAAGACGCCGAAGAAATTGAAATTCAAAGGAA
GATAAGAACAGGAACATTTGAAAGTGATTGTAAGGCCGGGGGGTTCGACT
CGCGGAAGCGCAAATTCAGCGAATAA
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