Gchil4328.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4328.t2
Unique Name	Gchil4328.t2
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	534

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:2112433..2114034 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5786.XP_003288371.1
PFAMs	MAD
Max annot lvl	554915\|Amoebozoa
KEGG ko	ko:K06638
KEGG Pathway	ko04110,ko04914,ko05203,map04110,map04914,map05203
Evalue	9.16e-12
EggNOG OGs	KOG4593@1\|root,KOG4593@2759\|Eukaryota,3XCCM@554915\|Amoebozoa
Description	Mitotic checkpoint protein
COG category	D
BRITE	ko00000,ko00001,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4328	Gchil4328	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 2111806..2114034 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4328.t2.start1	Gchil4328.t2.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 2112433..2112435 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4328.t2.CDS1	Gchil4328.t2.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 2112433..2114034 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4328.t2.exon1	Gchil4328.t2.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 2112433..2114034 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4328.t2.stop1	Gchil4328.t2.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 2114032..2114034 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4328.t2	Gchil4328.t2	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 2112433..2114034 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:2112433..2114034+
coding sequence from alignment at tig00004373_pilon:2112433..2114034+

mRNA sequence

>Gchil4328.t2 ID=Gchil4328.t2|Name=Gchil4328.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=534bp
MDHLSKSRSSFGEFRDANTTDLRKKNVALESEVFRMRSQLRDESVSRTRM
GARLTELETENDRLRELCRNAEHNVEQSKYMNEEITLLRIQASEEEQALR
NASALQSEKEELARLISALSPTGDAQEGIQILRSLADGAGGNKSADIAQR
IAAQKYEVRIAEIEQQNSIKLLRLRDELDDCRRNVNEMRNESIRLRDSID
AASVEKKRCERGRRILQREVDHLRAALREIEEVEIGTAAQSDDSRLRRRL
ESAEEMASQYKSALASIEGELEVKRRQYEELRSRKVKVLETRGSADQRLS
EIRELENQLESETNCRREAEKKADKLKSQLYDAQKAVEQLQAEYATLPAD
TSTPDYDPTKVKVLHLVDNPVARALRDYAMKSIENKDRERGQLDKDVDMS
DESFPELATLRLRVSQLEKENEQLSKDSKVGLRTKEIAMKKIEEVRIAVY
NLFGWSMRMTGAKYTLGSMYAESQNEILEFGKNEDGGFALMETHYTNQIS
EDIEQFAQRMNSLPGLLAHITLENLEKTTLMNV*

spliced messenger RNA

>Gchil4328.t2 ID=Gchil4328.t2|Name=Gchil4328.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1602bp|location=Sequence derived from alignment at tig00004373_pilon:2112433..2114034+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCATCTCTCCAAAAGTCGCTCTTCCTTCGGCGAGTTTCGGGATGC
AAATACTACAGATTTGCGAAAGAAGAATGTGGCTCTGGAGTCAGAAGTGT
TTCGAATGCGATCACAACTTCGTGATGAGAGTGTCAGCCGCACCCGTATG
GGAGCAAGGCTTACCGAGTTAGAGACTGAGAATGATCGACTCCGTGAGCT
GTGTAGAAACGCAGAACATAATGTTGAACAGTCCAAGTACATGAACGAAG
AAATTACTCTTTTACGCATTCAAGCTTCAGAAGAGGAACAAGCCCTGCGG
AATGCTTCAGCGCTACAAAGTGAAAAAGAAGAACTTGCGCGTCTCATCTC
TGCCCTTTCTCCAACTGGGGATGCCCAGGAAGGAATTCAAATACTGCGTT
CTCTGGCGGATGGGGCAGGAGGGAACAAAAGTGCCGATATTGCTCAACGT
ATTGCAGCACAAAAATACGAGGTTCGCATCGCGGAAATAGAACAGCAAAA
TAGTATAAAGCTTTTGCGGTTGCGAGACGAACTGGATGATTGTCGTCGAA
ATGTGAATGAAATGAGAAACGAAAGCATTCGGCTCAGGGATAGCATCGAC
GCAGCTTCCGTAGAAAAGAAACGCTGTGAACGTGGTAGAAGGATTTTGCA
ACGAGAAGTGGATCATCTAAGAGCAGCGCTGCGCGAAATTGAAGAAGTTG
AGATAGGGACAGCAGCTCAGTCAGATGACAGTAGATTAAGACGAAGACTG
GAGTCTGCTGAAGAGATGGCTTCGCAGTATAAATCAGCGCTGGCGAGTAT
TGAGGGTGAGTTGGAGGTGAAGCGGAGACAATACGAAGAGCTGAGGTCAA
GAAAGGTTAAAGTCCTTGAAACTCGGGGTTCCGCTGACCAGCGGCTTTCT
GAAATTCGAGAGCTGGAAAATCAATTAGAATCAGAGACAAACTGTAGGCG
TGAAGCTGAGAAGAAAGCTGATAAGTTAAAATCTCAGTTGTATGATGCAC
AGAAAGCAGTGGAGCAGCTTCAAGCGGAATATGCAACTCTTCCTGCTGAT
ACTTCAACTCCTGACTATGATCCCACGAAAGTTAAGGTACTACATCTCGT
CGACAATCCAGTGGCGAGAGCTTTGCGGGACTATGCTATGAAATCTATTG
AGAATAAGGACAGAGAACGGGGGCAATTGGACAAAGACGTGGACATGAGT
GACGAAAGTTTTCCTGAATTAGCGACTTTGCGGCTTAGAGTATCTCAGCT
GGAAAAGGAAAATGAACAACTTTCGAAAGATTCAAAGGTAGGATTAAGGA
CAAAAGAAATCGCAATGAAGAAGATTGAAGAGGTACGAATAGCTGTTTAC
AATTTATTTGGATGGTCCATGAGAATGACAGGCGCAAAATATACACTTGG
ATCCATGTATGCCGAGAGTCAGAATGAAATTCTGGAGTTTGGAAAGAATG
AAGACGGAGGTTTTGCACTGATGGAAACACACTATACGAACCAAATTTCA
GAAGACATTGAACAATTTGCTCAAAGAATGAATTCACTTCCTGGTTTACT
CGCGCACATCACCCTAGAGAACTTAGAGAAGACAACCTTGATGAATGTTT
GA

protein sequence of Gchil4328.t2

>Gchil4328.t2 ID=Gchil4328.t2|Name=Gchil4328.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=534bp
MDHLSKSRSSFGEFRDANTTDLRKKNVALESEVFRMRSQLRDESVSRTRM
GARLTELETENDRLRELCRNAEHNVEQSKYMNEEITLLRIQASEEEQALR
NASALQSEKEELARLISALSPTGDAQEGIQILRSLADGAGGNKSADIAQR
IAAQKYEVRIAEIEQQNSIKLLRLRDELDDCRRNVNEMRNESIRLRDSID
AASVEKKRCERGRRILQREVDHLRAALREIEEVEIGTAAQSDDSRLRRRL
ESAEEMASQYKSALASIEGELEVKRRQYEELRSRKVKVLETRGSADQRLS
EIRELENQLESETNCRREAEKKADKLKSQLYDAQKAVEQLQAEYATLPAD
TSTPDYDPTKVKVLHLVDNPVARALRDYAMKSIENKDRERGQLDKDVDMS
DESFPELATLRLRVSQLEKENEQLSKDSKVGLRTKEIAMKKIEEVRIAVY
NLFGWSMRMTGAKYTLGSMYAESQNEILEFGKNEDGGFALMETHYTNQIS
EDIEQFAQRMNSLPGLLAHITLENLEKTTLMNV*

mRNA from alignment at tig00004373_pilon:2112433..2114034+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4328.t2 ID=Gchil4328.t2|Name=Gchil4328.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1602bp|location=Sequence derived from alignment at tig00004373_pilon:2112433..2114034+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCATCTCTCCAAAAGTCGCTCTTCCTTCGGCGAGTTTCGGGATGC
AAATACTACAGATTTGCGAAAGAAGAATGTGGCTCTGGAGTCAGAAGTGT
TTCGAATGCGATCACAACTTCGTGATGAGAGTGTCAGCCGCACCCGTATG
GGAGCAAGGCTTACCGAGTTAGAGACTGAGAATGATCGACTCCGTGAGCT
GTGTAGAAACGCAGAACATAATGTTGAACAGTCCAAGTACATGAACGAAG
AAATTACTCTTTTACGCATTCAAGCTTCAGAAGAGGAACAAGCCCTGCGG
AATGCTTCAGCGCTACAAAGTGAAAAAGAAGAACTTGCGCGTCTCATCTC
TGCCCTTTCTCCAACTGGGGATGCCCAGGAAGGAATTCAAATACTGCGTT
CTCTGGCGGATGGGGCAGGAGGGAACAAAAGTGCCGATATTGCTCAACGT
ATTGCAGCACAAAAATACGAGGTTCGCATCGCGGAAATAGAACAGCAAAA
TAGTATAAAGCTTTTGCGGTTGCGAGACGAACTGGATGATTGTCGTCGAA
ATGTGAATGAAATGAGAAACGAAAGCATTCGGCTCAGGGATAGCATCGAC
GCAGCTTCCGTAGAAAAGAAACGCTGTGAACGTGGTAGAAGGATTTTGCA
ACGAGAAGTGGATCATCTAAGAGCAGCGCTGCGCGAAATTGAAGAAGTTG
AGATAGGGACAGCAGCTCAGTCAGATGACAGTAGATTAAGACGAAGACTG
GAGTCTGCTGAAGAGATGGCTTCGCAGTATAAATCAGCGCTGGCGAGTAT
TGAGGGTGAGTTGGAGGTGAAGCGGAGACAATACGAAGAGCTGAGGTCAA
GAAAGGTTAAAGTCCTTGAAACTCGGGGTTCCGCTGACCAGCGGCTTTCT
GAAATTCGAGAGCTGGAAAATCAATTAGAATCAGAGACAAACTGTAGGCG
TGAAGCTGAGAAGAAAGCTGATAAGTTAAAATCTCAGTTGTATGATGCAC
AGAAAGCAGTGGAGCAGCTTCAAGCGGAATATGCAACTCTTCCTGCTGAT
ACTTCAACTCCTGACTATGATCCCACGAAAGTTAAGGTACTACATCTCGT
CGACAATCCAGTGGCGAGAGCTTTGCGGGACTATGCTATGAAATCTATTG
AGAATAAGGACAGAGAACGGGGGCAATTGGACAAAGACGTGGACATGAGT
GACGAAAGTTTTCCTGAATTAGCGACTTTGCGGCTTAGAGTATCTCAGCT
GGAAAAGGAAAATGAACAACTTTCGAAAGATTCAAAGGTAGGATTAAGGA
CAAAAGAAATCGCAATGAAGAAGATTGAAGAGGTACGAATAGCTGTTTAC
AATTTATTTGGATGGTCCATGAGAATGACAGGCGCAAAATATACACTTGG
ATCCATGTATGCCGAGAGTCAGAATGAAATTCTGGAGTTTGGAAAGAATG
AAGACGGAGGTTTTGCACTGATGGAAACACACTATACGAACCAAATTTCA
GAAGACATTGAACAATTTGCTCAAAGAATGAATTCACTTCCTGGTTTACT
CGCGCACATCACCCTAGAGAACTTAGAGAAGACAACCTTGATGAATGTTT
GA

Coding sequence (CDS) from alignment at tig00004373_pilon:2112433..2114034+

>Gchil4328.t2 ID=Gchil4328.t2|Name=Gchil4328.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1602bp|location=Sequence derived from alignment at tig00004373_pilon:2112433..2114034+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCATCTCTCCAAAAGTCGCTCTTCCTTCGGCGAGTTTCGGGATGC
AAATACTACAGATTTGCGAAAGAAGAATGTGGCTCTGGAGTCAGAAGTGT
TTCGAATGCGATCACAACTTCGTGATGAGAGTGTCAGCCGCACCCGTATG
GGAGCAAGGCTTACCGAGTTAGAGACTGAGAATGATCGACTCCGTGAGCT
GTGTAGAAACGCAGAACATAATGTTGAACAGTCCAAGTACATGAACGAAG
AAATTACTCTTTTACGCATTCAAGCTTCAGAAGAGGAACAAGCCCTGCGG
AATGCTTCAGCGCTACAAAGTGAAAAAGAAGAACTTGCGCGTCTCATCTC
TGCCCTTTCTCCAACTGGGGATGCCCAGGAAGGAATTCAAATACTGCGTT
CTCTGGCGGATGGGGCAGGAGGGAACAAAAGTGCCGATATTGCTCAACGT
ATTGCAGCACAAAAATACGAGGTTCGCATCGCGGAAATAGAACAGCAAAA
TAGTATAAAGCTTTTGCGGTTGCGAGACGAACTGGATGATTGTCGTCGAA
ATGTGAATGAAATGAGAAACGAAAGCATTCGGCTCAGGGATAGCATCGAC
GCAGCTTCCGTAGAAAAGAAACGCTGTGAACGTGGTAGAAGGATTTTGCA
ACGAGAAGTGGATCATCTAAGAGCAGCGCTGCGCGAAATTGAAGAAGTTG
AGATAGGGACAGCAGCTCAGTCAGATGACAGTAGATTAAGACGAAGACTG
GAGTCTGCTGAAGAGATGGCTTCGCAGTATAAATCAGCGCTGGCGAGTAT
TGAGGGTGAGTTGGAGGTGAAGCGGAGACAATACGAAGAGCTGAGGTCAA
GAAAGGTTAAAGTCCTTGAAACTCGGGGTTCCGCTGACCAGCGGCTTTCT
GAAATTCGAGAGCTGGAAAATCAATTAGAATCAGAGACAAACTGTAGGCG
TGAAGCTGAGAAGAAAGCTGATAAGTTAAAATCTCAGTTGTATGATGCAC
AGAAAGCAGTGGAGCAGCTTCAAGCGGAATATGCAACTCTTCCTGCTGAT
ACTTCAACTCCTGACTATGATCCCACGAAAGTTAAGGTACTACATCTCGT
CGACAATCCAGTGGCGAGAGCTTTGCGGGACTATGCTATGAAATCTATTG
AGAATAAGGACAGAGAACGGGGGCAATTGGACAAAGACGTGGACATGAGT
GACGAAAGTTTTCCTGAATTAGCGACTTTGCGGCTTAGAGTATCTCAGCT
GGAAAAGGAAAATGAACAACTTTCGAAAGATTCAAAGGTAGGATTAAGGA
CAAAAGAAATCGCAATGAAGAAGATTGAAGAGGTACGAATAGCTGTTTAC
AATTTATTTGGATGGTCCATGAGAATGACAGGCGCAAAATATACACTTGG
ATCCATGTATGCCGAGAGTCAGAATGAAATTCTGGAGTTTGGAAAGAATG
AAGACGGAGGTTTTGCACTGATGGAAACACACTATACGAACCAAATTTCA
GAAGACATTGAACAATTTGCTCAAAGAATGAATTCACTTCCTGGTTTACT
CGCGCACATCACCCTAGAGAACTTAGAGAAGACAACCTTGATGAATGTTT
GA