Gchil4321.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4321.t1
Unique NameGchil4321.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length232
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2097693..2099135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1229172.JQFA01000005_gene126
PFAMsDUF2064
Max annot lvl1117|Cyanobacteria
KEGG koko:K09931
Evalue2.48e-40
EggNOG OGsCOG3222@1|root,COG3222@2|Bacteria,1G536@1117|Cyanobacteria,1HAJD@1150|Oscillatoriales
Descriptionprotein conserved in bacteria
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4321Gchil4321Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 2097693..2099135 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4321.t1Gchil4321.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 2097693..2099135 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4321.t1.stop1Gchil4321.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 2097693..2097695 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4321.t1.CDS1Gchil4321.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2097693..2097806 -
Gchil4321.t1.CDS2Gchil4321.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2098554..2099135 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4321.t1.exon1Gchil4321.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2097693..2097806 -
Gchil4321.t1.exon2Gchil4321.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2098554..2099135 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4321.t1.intron1Gchil4321.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 2097807..2098553 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4321.t1.start1Gchil4321.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 2099133..2099135 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4321.t1 ID=Gchil4321.t1|Name=Gchil4321.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=232bp
MQTSYLVQCPTHIILLTKYPTPGFAKTRLIPTEGAEGAARISNQLTKRTL
ATLRSYQSRDELAQVIIHYAARGGKMSSSELDEWLKPTERQTVVPQTGGD
LGDRLIAAFELSFTHNASKAIVIGSDTPDLSVDILIDALSLLDEADVVIG
PAEDGGYYLLGLKAMNTTLFTSMPWSTSKVLKKTIAAAESSGMSVLLPPF
AYFEDVSVNCTESVAHEPPHLRILMAKFLGY*
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spliced messenger RNA

>Gchil4321.t1 ID=Gchil4321.t1|Name=Gchil4321.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=696bp|location=Sequence derived from alignment at tig00004373_pilon:2097693..2099135- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAACCTCTTATCTTGTTCAATGCCCAACGCACATAATTTTGTTAAC
GAAATATCCTACTCCTGGCTTCGCGAAAACCCGTCTTATTCCGACTGAAG
GGGCGGAAGGAGCCGCTCGCATTTCCAATCAACTCACGAAGCGAACATTA
GCAACCTTGCGATCGTATCAGAGCCGTGATGAGCTTGCGCAGGTTATAAT
CCACTACGCCGCAAGAGGGGGGAAAATGTCTTCTTCAGAATTAGACGAGT
GGCTCAAACCGACAGAACGGCAGACCGTTGTTCCTCAAACTGGCGGCGAC
CTTGGTGACCGTCTAATTGCAGCCTTTGAGCTTTCATTTACCCACAATGC
TTCCAAGGCGATTGTTATTGGGTCTGACACCCCGGATCTAAGTGTAGATA
TCCTGATTGATGCATTGTCTTTGCTGGATGAAGCAGATGTTGTTATTGGA
CCGGCTGAGGACGGGGGCTACTATTTGCTTGGTCTCAAAGCCATGAACAC
GACGCTTTTTACCTCAATGCCATGGAGCACTTCTAAGGTACTCAAGAAAA
CCATAGCCGCTGCTGAGTCCTCGGGCATGTCGGTTCTACTTCCCCCCTTT
GCGTACTTCGAGGACGTTTCCGTAAATTGTACGGAATCTGTCGCCCATGA
GCCCCCCCATCTTCGCATTCTAATGGCAAAATTTCTCGGATACTGA
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protein sequence of Gchil4321.t1

>Gchil4321.t1 ID=Gchil4321.t1|Name=Gchil4321.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=232bp
MQTSYLVQCPTHIILLTKYPTPGFAKTRLIPTEGAEGAARISNQLTKRTL
ATLRSYQSRDELAQVIIHYAARGGKMSSSELDEWLKPTERQTVVPQTGGD
LGDRLIAAFELSFTHNASKAIVIGSDTPDLSVDILIDALSLLDEADVVIG
PAEDGGYYLLGLKAMNTTLFTSMPWSTSKVLKKTIAAAESSGMSVLLPPF
AYFEDVSVNCTESVAHEPPHLRILMAKFLGY*
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mRNA from alignment at tig00004373_pilon:2097693..2099135-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4321.t1 ID=Gchil4321.t1|Name=Gchil4321.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1443bp|location=Sequence derived from alignment at tig00004373_pilon:2097693..2099135- (Gracilaria chilensis NLEC103_M9 male)
ATGCAAACCTCTTATCTTGTTCAATGCCCAACGCACATAATTTTGTTAAC
GAAATATCCTACTCCTGGCTTCGCGAAAACCCGTCTTATTCCGACTGAAG
GGGCGGAAGGAGCCGCTCGCATTTCCAATCAACTCACGAAGCGAACATTA
GCAACCTTGCGATCGTATCAGAGCCGTGATGAGCTTGCGCAGGTTATAAT
CCACTACGCCGCAAGAGGGGGGAAAATGTCTTCTTCAGAATTAGACGAGT
GGCTCAAACCGACAGAACGGCAGACCGTTGTTCCTCAAACTGGCGGCGAC
CTTGGTGACCGTCTAATTGCAGCCTTTGAGCTTTCATTTACCCACAATGC
TTCCAAGGCGATTGTTATTGGGTCTGACACCCCGGATCTAAGTGTAGATA
TCCTGATTGATGCATTGTCTTTGCTGGATGAAGCAGATGTTGTTATTGGA
CCGGCTGAGGACGGGGGCTACTATTTGCTTGGTCTCAAAGCCATGAACAC
GACGCTTTTTACCTCAATGCCATGGAGCACTTCTAAGGTACTCAAGAAAA
CCATAGCCGCTGCTGAGTCCTCGGGCATGTCGGTAAAAAGCCTGCCAACG
CTTAGGGACATAGACACACCAGATGATCTCAAGTTCTTTATCTCATGATC
ACTGATCTATATCTATCGAACTCAGTCTCGGATACCCACACATTCCAGTC
TAAGCATTCCAAAAGCTCGTACTCAACTTTGTGAATGCGCTCCATACTTA
CGAGTGTGCTTGCTTCCCAATTCCATGTTGGAAGATCACGCAAGAACTTC
GACGCCAATAGAGTAAGGCCACAAAAGAGCTCGCACACTCTGTTTGGGGT
GACTGTGATTGGGTCTCTAGATAAAATAATCCGATCAAGTAGCGCAAGAG
CAGTGATGAATATGCTTTCCTCCCCCAAGCTGCTCTGTCCGAGGTGGTCA
AGAAAGTACTCGAGAGCTTCGATCGTCACCTCCCGTTCCTGTTGGTTTGC
ACATGAACAAACTCCAACCACAGCATGCCCAAGTCTCCAGAACATCTTCC
TTTGGCATTCTTCCTCCCAAACGGAGTCTTGCTTCAGTCTGTCAGTTTGT
TCCCTAGAATCACTCTGATCGCGTTTTCTGTTGGAACTGACTGCCCTTTG
CTCTCGCCCTCGCCCTCGCTCTCTCCCTTGCCCCCGCCTCTGCCCGTCCC
CCTGCCCTTGTCCTCTCCTTCGCCCACGTCCGCGCTCGTGGCCATTTTTC
CCTTCCCTTCCTGTGCGAGCCCTTTTCTTCCTCAACGGGCTTCCCGCTCC
ACTTTTTTTCGCTTGTCTATTCCGCTCAGGTTCTACTTCCCCCCTTTGCG
TACTTCGAGGACGTTTCCGTAAATTGTACGGAATCTGTCGCCCATGAGCC
CCCCCATCTTCGCATTCTAATGGCAAAATTTCTCGGATACTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:2097693..2099135-

>Gchil4321.t1 ID=Gchil4321.t1|Name=Gchil4321.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=696bp|location=Sequence derived from alignment at tig00004373_pilon:2097693..2099135- (Gracilaria chilensis NLEC103_M9 male)
ATGCAAACCTCTTATCTTGTTCAATGCCCAACGCACATAATTTTGTTAAC
GAAATATCCTACTCCTGGCTTCGCGAAAACCCGTCTTATTCCGACTGAAG
GGGCGGAAGGAGCCGCTCGCATTTCCAATCAACTCACGAAGCGAACATTA
GCAACCTTGCGATCGTATCAGAGCCGTGATGAGCTTGCGCAGGTTATAAT
CCACTACGCCGCAAGAGGGGGGAAAATGTCTTCTTCAGAATTAGACGAGT
GGCTCAAACCGACAGAACGGCAGACCGTTGTTCCTCAAACTGGCGGCGAC
CTTGGTGACCGTCTAATTGCAGCCTTTGAGCTTTCATTTACCCACAATGC
TTCCAAGGCGATTGTTATTGGGTCTGACACCCCGGATCTAAGTGTAGATA
TCCTGATTGATGCATTGTCTTTGCTGGATGAAGCAGATGTTGTTATTGGA
CCGGCTGAGGACGGGGGCTACTATTTGCTTGGTCTCAAAGCCATGAACAC
GACGCTTTTTACCTCAATGCCATGGAGCACTTCTAAGGTACTCAAGAAAA
CCATAGCCGCTGCTGAGTCCTCGGGCATGTCGGTTCTACTTCCCCCCTTT
GCGTACTTCGAGGACGTTTCCGTAAATTGTACGGAATCTGTCGCCCATGA
GCCCCCCCATCTTCGCATTCTAATGGCAAAATTTCTCGGATACTGA
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