Gchil4362.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4362.t1
Unique NameGchil4362.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length238
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2347192..2347905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3827.XP_004503534.1
PFAMsPut_Phosphatase
Max annot lvl35493|Streptophyta
KEGG rclassRC00017
KEGG koko:K06124,ko:K13248
KEGG ReactionR00173,R01911,R02494,R06870,R06871
KEGG Pathwayko00564,ko00750,ko01100,map00564,map00750,map01100
GOsGO:0003674,GO:0003824,GO:0003993,GO:0004427,GO:0006725,GO:0006732,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009229,GO:0009987,GO:0016043,GO:0016311,GO:0016462,GO:0016787,GO:0016788,GO:0016791,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019637,GO:0022607,GO:0034641,GO:0042131,GO:0042357,GO:0042578,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0046483,GO:0051186,GO:0051188,GO:0051259,GO:0051262,GO:0065003,GO:0071704,GO:0071840,GO:0072527,GO:0072528,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue9.19e-28
EggNOG OGsKOG3120@1|root,KOG3120@2759|Eukaryota,37JKC@33090|Viridiplantae,3G9YP@35493|Streptophyta,4JRYH@91835|fabids
EC3.1.3.74,3.1.3.75
DescriptionInorganic pyrophosphatase
COG categoryS
BRITEko00000,ko00001,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4362Gchil4362Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 2347192..2347905 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4362.t1.stop1Gchil4362.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 2347192..2347194 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4362.t1.CDS1Gchil4362.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2347192..2347905 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4362.t1.exon1Gchil4362.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2347192..2347905 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4362.t1.start1Gchil4362.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 2347903..2347905 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4362.t1Gchil4362.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 2347192..2347905 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4362.t1 ID=Gchil4362.t1|Name=Gchil4362.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=238bp
MAPFLFVFDFDETLVPHNTDLLPLIHLAPDLLHSHVNNPHHRALGWTTLM
NTVLSILHSRHLSPAKILQTMHQAVIHPATKSMLSTLFNNPHVHCAIASD
ANSLYIQSCLEVNHINPSQFTAGIFTNPAHVHLDTIFVKPFATQPHSCPT
CPPNLCKSIVLKHLQTRYPSHTLVYVGDGSNDYCPAKRIPTDGYVLPRQA
FRLEHKILQHGQVHCQVRSWASAEQLQSIVSHILQPK*
back to top

spliced messenger RNA

>Gchil4362.t1 ID=Gchil4362.t1|Name=Gchil4362.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=714bp|location=Sequence derived from alignment at tig00004373_pilon:2347192..2347905- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGTTTCTGTTCGTCTTCGACTTCGATGAGACGCTCGTGCCTCA
CAACACCGACCTCCTGCCGCTCATCCATCTAGCGCCCGACCTGCTGCACA
GCCACGTCAACAACCCGCACCACCGTGCTCTTGGCTGGACCACCCTCATG
AACACCGTTCTCAGCATTCTTCACTCTCGCCACTTATCCCCCGCCAAAAT
CCTTCAAACCATGCACCAAGCAGTCATTCATCCCGCCACAAAATCCATGC
TTTCCACCCTGTTCAACAATCCCCACGTGCATTGCGCAATTGCATCAGAT
GCAAACTCGCTCTACATCCAATCCTGTCTCGAGGTAAATCATATCAATCC
CTCCCAGTTCACCGCAGGAATCTTTACCAACCCTGCCCACGTCCATCTAG
ATACCATTTTTGTTAAGCCGTTTGCCACGCAACCCCATTCATGTCCCACC
TGCCCCCCAAACTTGTGCAAATCAATCGTTCTCAAACATCTACAAACGCG
CTACCCATCTCACACCCTCGTCTATGTCGGAGATGGCTCCAATGACTACT
GCCCAGCAAAGCGCATTCCCACCGACGGATACGTCCTTCCTCGTCAAGCA
TTTCGTCTCGAGCACAAAATTTTGCAACACGGACAAGTACATTGCCAAGT
TCGCTCATGGGCATCTGCCGAACAGTTGCAGTCCATTGTCAGCCACATCT
TGCAACCCAAGTGA
back to top

protein sequence of Gchil4362.t1

>Gchil4362.t1 ID=Gchil4362.t1|Name=Gchil4362.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=238bp
MAPFLFVFDFDETLVPHNTDLLPLIHLAPDLLHSHVNNPHHRALGWTTLM
NTVLSILHSRHLSPAKILQTMHQAVIHPATKSMLSTLFNNPHVHCAIASD
ANSLYIQSCLEVNHINPSQFTAGIFTNPAHVHLDTIFVKPFATQPHSCPT
CPPNLCKSIVLKHLQTRYPSHTLVYVGDGSNDYCPAKRIPTDGYVLPRQA
FRLEHKILQHGQVHCQVRSWASAEQLQSIVSHILQPK*
back to top

mRNA from alignment at tig00004373_pilon:2347192..2347905-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4362.t1 ID=Gchil4362.t1|Name=Gchil4362.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=714bp|location=Sequence derived from alignment at tig00004373_pilon:2347192..2347905- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCGTTTCTGTTCGTCTTCGACTTCGATGAGACGCTCGTGCCTCA
CAACACCGACCTCCTGCCGCTCATCCATCTAGCGCCCGACCTGCTGCACA
GCCACGTCAACAACCCGCACCACCGTGCTCTTGGCTGGACCACCCTCATG
AACACCGTTCTCAGCATTCTTCACTCTCGCCACTTATCCCCCGCCAAAAT
CCTTCAAACCATGCACCAAGCAGTCATTCATCCCGCCACAAAATCCATGC
TTTCCACCCTGTTCAACAATCCCCACGTGCATTGCGCAATTGCATCAGAT
GCAAACTCGCTCTACATCCAATCCTGTCTCGAGGTAAATCATATCAATCC
CTCCCAGTTCACCGCAGGAATCTTTACCAACCCTGCCCACGTCCATCTAG
ATACCATTTTTGTTAAGCCGTTTGCCACGCAACCCCATTCATGTCCCACC
TGCCCCCCAAACTTGTGCAAATCAATCGTTCTCAAACATCTACAAACGCG
CTACCCATCTCACACCCTCGTCTATGTCGGAGATGGCTCCAATGACTACT
GCCCAGCAAAGCGCATTCCCACCGACGGATACGTCCTTCCTCGTCAAGCA
TTTCGTCTCGAGCACAAAATTTTGCAACACGGACAAGTACATTGCCAAGT
TCGCTCATGGGCATCTGCCGAACAGTTGCAGTCCATTGTCAGCCACATCT
TGCAACCCAAGTGA
back to top

Coding sequence (CDS) from alignment at tig00004373_pilon:2347192..2347905-

>Gchil4362.t1 ID=Gchil4362.t1|Name=Gchil4362.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=714bp|location=Sequence derived from alignment at tig00004373_pilon:2347192..2347905- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCGTTTCTGTTCGTCTTCGACTTCGATGAGACGCTCGTGCCTCA
CAACACCGACCTCCTGCCGCTCATCCATCTAGCGCCCGACCTGCTGCACA
GCCACGTCAACAACCCGCACCACCGTGCTCTTGGCTGGACCACCCTCATG
AACACCGTTCTCAGCATTCTTCACTCTCGCCACTTATCCCCCGCCAAAAT
CCTTCAAACCATGCACCAAGCAGTCATTCATCCCGCCACAAAATCCATGC
TTTCCACCCTGTTCAACAATCCCCACGTGCATTGCGCAATTGCATCAGAT
GCAAACTCGCTCTACATCCAATCCTGTCTCGAGGTAAATCATATCAATCC
CTCCCAGTTCACCGCAGGAATCTTTACCAACCCTGCCCACGTCCATCTAG
ATACCATTTTTGTTAAGCCGTTTGCCACGCAACCCCATTCATGTCCCACC
TGCCCCCCAAACTTGTGCAAATCAATCGTTCTCAAACATCTACAAACGCG
CTACCCATCTCACACCCTCGTCTATGTCGGAGATGGCTCCAATGACTACT
GCCCAGCAAAGCGCATTCCCACCGACGGATACGTCCTTCCTCGTCAAGCA
TTTCGTCTCGAGCACAAAATTTTGCAACACGGACAAGTACATTGCCAAGT
TCGCTCATGGGCATCTGCCGAACAGTTGCAGTCCATTGTCAGCCACATCT
TGCAACCCAAGTGA
back to top