Gchil4143.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4143.t1
Unique NameGchil4143.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length100
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:993510..994076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4081.Solyc04g008490.1.1
PFAMsNDUF_B7
Max annot lvl35493|Streptophyta
KEGG koko:K03963
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00147
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0008150,GO:0008152,GO:0009853,GO:0009987,GO:0016020,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0070469,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902494,GO:1990204
Evalue3.81e-25
EggNOG OGsKOG3468@1|root,KOG3468@2759|Eukaryota,37V8B@33090|Viridiplantae,3GJI5@35493|Streptophyta,44KK2@71274|asterids
DescriptionNADH dehydrogenase ubiquinone 1 beta subcomplex subunit 7-like
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4143Gchil4143Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 993510..994076 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4143.t1Gchil4143.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 993510..994076 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4143.t1.stop1Gchil4143.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 993510..993512 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4143.t1.CDS1Gchil4143.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 993510..993609 -
Gchil4143.t1.CDS2Gchil4143.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 993706..993838 -
Gchil4143.t1.CDS3Gchil4143.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 993927..993974 -
Gchil4143.t1.CDS4Gchil4143.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 994058..994076 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4143.t1.exon1Gchil4143.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 993510..993609 -
Gchil4143.t1.exon2Gchil4143.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 993706..993838 -
Gchil4143.t1.exon3Gchil4143.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 993927..993974 -
Gchil4143.t1.exon4Gchil4143.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 994058..994076 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4143.t1.intron1Gchil4143.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 993610..993705 -
Gchil4143.t1.intron2Gchil4143.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 993839..993926 -
Gchil4143.t1.intron3Gchil4143.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 993975..994057 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4143.t1.start1Gchil4143.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 994074..994076 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4143.t1 ID=Gchil4143.t1|Name=Gchil4143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=100bp
MGGNAEVAEAKMQCTDEEMVQNRIPIDYRDFCAHKLIPLNNCRRKNFYLP
FRCEDERHAYEKCQYDQYMRRVNEMKAIVKEERRAARIARDEAEAASQE*
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spliced messenger RNA

>Gchil4143.t1 ID=Gchil4143.t1|Name=Gchil4143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=300bp|location=Sequence derived from alignment at tig00004373_pilon:993510..994076- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGGAAACGCCGAAGTTGCTGAAGCTAAGATGCAATGCACTGATGA
AGAAATGGTACAAAACCGTATTCCGATCGACTACAGGGACTTCTGTGCTC
ACAAACTAATCCCGCTCAACAATTGTCGTCGTAAAAACTTTTATCTTCCA
TTTCGATGTGAGGATGAACGTCATGCATACGAAAAATGCCAGTACGATCA
GTATATGCGAAGAGTGAACGAGATGAAAGCCATCGTAAAGGAAGAACGAA
GAGCGGCTCGAATAGCTCGAGATGAAGCTGAAGCTGCATCACAAGAATAA
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protein sequence of Gchil4143.t1

>Gchil4143.t1 ID=Gchil4143.t1|Name=Gchil4143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=100bp
MGGNAEVAEAKMQCTDEEMVQNRIPIDYRDFCAHKLIPLNNCRRKNFYLP
FRCEDERHAYEKCQYDQYMRRVNEMKAIVKEERRAARIARDEAEAASQE*
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mRNA from alignment at tig00004373_pilon:993510..994076-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4143.t1 ID=Gchil4143.t1|Name=Gchil4143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00004373_pilon:993510..994076- (Gracilaria chilensis NLEC103_M9 male)
ATGGGGGGAAACGCCGAAGGTACGCGCAGGAATTCGCAAATCCAACTATG
TTGATCGTCAAAAGAGGTGATTTATGACTAACAGGTTCGTCCTTCCGGGA
AGTTGCTGAAGCTAAGATGCAATGCACTGATGAAGAAATGGTACAAAACC
GTAAGTTGAGCCCTTAGTCTCACTGAAGATGGGGAAACCGAAAAAGTTCA
GGTCAATGTTATTGAAACTGACTTTTCATCGAATATAGGTATTCCGATCG
ACTACAGGGACTTCTGTGCTCACAAACTAATCCCGCTCAACAATTGTCGT
CGTAAAAACTTTTATCTTCCATTTCGATGTGAGGATGAACGTCATGCATA
CGAAAAATGCCAGTACGATCAGTGAGTTGCATCGATATCTCTCTCTCTTG
TGATTTGCACATGATTTCTCCGCGTCTATTTTCTAACTTAGGACGCTCTT
CTCATGTATTTTCTCAGGTATATGCGAAGAGTGAACGAGATGAAAGCCAT
CGTAAAGGAAGAACGAAGAGCGGCTCGAATAGCTCGAGATGAAGCTGAAG
CTGCATCACAAGAATAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:993510..994076-

>Gchil4143.t1 ID=Gchil4143.t1|Name=Gchil4143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=300bp|location=Sequence derived from alignment at tig00004373_pilon:993510..994076- (Gracilaria chilensis NLEC103_M9 male)
ATGGGGGGAAACGCCGAAGTTGCTGAAGCTAAGATGCAATGCACTGATGA
AGAAATGGTACAAAACCGTATTCCGATCGACTACAGGGACTTCTGTGCTC
ACAAACTAATCCCGCTCAACAATTGTCGTCGTAAAAACTTTTATCTTCCA
TTTCGATGTGAGGATGAACGTCATGCATACGAAAAATGCCAGTACGATCA
GTATATGCGAAGAGTGAACGAGATGAAAGCCATCGTAAAGGAAGAACGAA
GAGCGGCTCGAATAGCTCGAGATGAAGCTGAAGCTGCATCACAAGAATAA
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