Gchil7487.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7487.t1
Unique NameGchil7487.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length340
Homology
BLAST of Gchil7487.t1 vs. uniprot
Match: A0A2V3J3D5_9FLOR (BHLH domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3D5_9FLOR)

HSP 1 Score: 372 bits (954), Expect = 2.540e-125
Identity = 188/303 (62.05%), Postives = 228/303 (75.25%), Query Frame = 0
Query:   36 IVRRRHDARKTRATIGDQFEQLRSVLPRAPDGKQLIAKAQILECALGVIRDLMSRATRLAVELAVVSPESTRSWVSSVSGQGRRPLSSTVISVMKLFAARRNWRYAEWWTLDEKRFKSGEETDVDHGRQVEVEKPAGVIEHPATVHGCVVRDSISVMRLGCTIIHRTLEDEAQRTRHDFEEDERLSKFAKASQEYEFHPRMGIPGRVWTSQRAEWLVDLSDKDAFKRSEIAQQFGMKTCLAVPLKFGGHVHSVIAFYCTERRLCEAECLELANVLVKCLEQVYTPSQAMSWQIGTERELPSSP 338
            I RRR D R+TRAT+GDQFEQLR VLP   DG Q   KAQIL+  + VIR+LM+RAT L++ELAVVSP+ TRSWVS V+ QGR PLS TV SVMKLFA  +NWRY EWWTLDEKR KS ++    H    E EKP GVI+HPA VHGCVVRDS SVMRL  TII++  + E+     D     +L  FA+AS +YEF PR+G+PGRVWTSQRAEWL++L +K+AF RSE+A+QFGM+TCLAVP++FGGHVHSV+AFY TERRLC+ ECLELA++L K +E+VY+P    +W        PSSP
Sbjct:   40 IARRRRDVRRTRATLGDQFEQLRGVLPPPSDGVQYREKAQILKYTIRVIRNLMNRATHLSIELAVVSPQKTRSWVSRVAQQGRLPLSRTVASVMKLFAEHQNWRYGEWWTLDEKRHKSHDDF-TQHTTNTEFEKPEGVIDHPANVHGCVVRDSSSVMRLSYTIINKPQQSESLSAGADMAVHRKLCAFARASMDYEFRPRIGVPGRVWTSQRAEWLLELYNKEAFIRSELAKQFGMQTCLAVPVRFGGHVHSVLAFYSTERRLCDPECLELASLLAKSVEEVYSPRHGTAWDSCGGSAFPSSP 341          
BLAST of Gchil7487.t1 vs. uniprot
Match: A0A2V3IV04_9FLOR (GAF domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IV04_9FLOR)

HSP 1 Score: 139 bits (350), Expect = 7.770e-34
Identity = 86/261 (32.95%), Postives = 134/261 (51.34%), Query Frame = 0
Query:   47 RATIGDQFEQLRSVLPRAPDGKQLIAKAQILECALGVIRDLMSRATRLAVELAVVSPESTRSWVSSVSGQGRRPLSSTVISVMKLFAARRNWRYAEWWTLDEKRFKSGEETDVDHGRQVEVEKPAGVIEHPATVHGCVVRDSISVMRLGCTIIHRTLEDEAQRTRHDFEEDERLSKFAKASQEYEFHPRMGIPGRVWTSQRAEWLVDLSDKDAFKRSEIAQQFGMKTCLAVPLKFGGHVHSVIAFYCTERRLCEAECLELA 307
            R  +   FE+L+  LP AP G ++  KAQ+L+ A+ V++ ++ R T+L +ELAV S ++T  W+S +  +      +    VM+LF+ RR W++AE WT   K   +  E D D+                            SV    C+ I     +E +           L  F+KAS++Y F  + G+PGRVW+S R EW+  L +   F RS +A++ G+K CLAVP+   G + +V+ FY T+ R  + +CLELA
Sbjct:  217 RDRLNSMFERLKRTLPPAPSGVEVKHKAQVLDYAILVLKGMVERTTQLEIELAVSSNKATMEWISKLVDRVDT-FPNAAEEVMQLFSRRRGWKHAELWTTSRKT--ASPEVDSDN----------------------------SVTLRFCSSICSETTNERKLN---------LQTFSKASEKYAFKAQHGVPGRVWSSMRPEWVTGLDNSKNFHRSSLAKKHGLKVCLAVPVTITGKIEAVMCFYDTKHRPYDTQCLELA 437          
BLAST of Gchil7487.t1 vs. uniprot
Match: R7QJ09_CHOCR (BHLH domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJ09_CHOCR)

HSP 1 Score: 114 bits (286), Expect = 8.080e-26
Identity = 77/267 (28.84%), Postives = 132/267 (49.44%), Query Frame = 0
Query:   44 RKTRATIGDQFEQLRSVLPRAPDGKQLIAKAQILECALGVIRDLMSRATRLAVELAVVSPESTRSWVSSVSGQGRRPLSSTVISVMKLFAARRNWRYAEWWTLDEKRFKSGEETDVDHGRQVEVEKPAGVIEHPATVHGCVVRDSISVMRLGCTIIHR--TLEDEAQRTRHDFEEDERLSKFAKASQEYEFHPRMGIPGRVWTSQRAEWLVDLSDKDAFKRSEIAQQFGMKTCLAVPLKFGGHVHSVIAFYCTERRLCEAECLELAN 308
            R+ RA +  +F++L S+LP  P    +  KAQIL+ A+ V RD+ +R T L  ELA+ S     +WV  +  +    L   +   + L   +  W+Y+E W   ++   S        G+   V   + V+     + G   R     +RLG  +I      +D   +T+        L +F   S+ Y+   R+ +PGRV  + R EWL  L+D++AF+R+ +A    +  C  VP+   GH+ +V  F+ T++R  +A+C++LA+
Sbjct:   49 RRCRAKVNLKFQELLSILPTPPPKTGIKHKAQILDYAIRVYRDIHARKTLLEAELALSSRSQLNAWVDGIVLRSIS-LQDALAPYLSLICTKGGWKYSEAWIPAQQPIPS----QPVRGKVEAVSGESNVLTPTTLLSGPTAR-----LRLGLAVIPSLGNTDDPDLQTK--------LERFRDKSRAYQCKARVDLPGRVMCTMRPEWLPSLNDQEAFQRAHLAHNANLVVCFGVPVFICGHIAAVAVFFDTDQRAYDAKCVDLAD 297          
BLAST of Gchil7487.t1 vs. uniprot
Match: A0A1X6NUF4_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NUF4_PORUM)

HSP 1 Score: 84.7 bits (208), Expect = 2.700e-14
Identity = 40/100 (40.00%), Postives = 63/100 (63.00%), Query Frame = 0
Query:  220 LSKFAKASQEYEFHPRMGIPGRVWTSQRAEWLVDLSD-KDAFKRSEIAQQFGMKTCLAVPLKFGGHVHSVIAFYCTERRLCEAECLELANVLVKCLEQVY 318
            L +F+  S+ + F P++G+PGRVW++ R EWL  L+D +  F R+ +A++FG++ C+AVP+   G V +V+AFY T  R  +  C +LA  L   L   Y
Sbjct:  879 LERFSIESRAWRFRPKVGVPGRVWSTMRPEWLASLADDRGTFLRAPLARRFGLRVCVAVPVTVSGSVAAVVAFYDTVARPFDPACYDLAVKLTCALGNAY 978          
BLAST of Gchil7487.t1 vs. uniprot
Match: UPI001683F77F (diguanylate cyclase n=1 Tax=Microcoleus sp. FACHB-831 TaxID=2692827 RepID=UPI001683F77F)

HSP 1 Score: 75.9 bits (185), Expect = 1.670e-11
Identity = 44/119 (36.97%), Postives = 63/119 (52.94%), Query Frame = 0
Query:  218 ERLSKFAKASQEYEFHPRMGIPGRVWTSQRAEWL--VDLSDKDAFKRSEIAQQFGMKTCLAVPLKFGGHVHSVIAFYCTERRLCEAECLELANVLVKCLEQVYTPSQAMSWQIGTEREL 334
            E L +F   S++  F P  G+PGRVW SQ+ EW+  V L     F RS+IA + G+KT L VPL     V +V+ F+ TE+R  E   +EL N +   L  +    +A +  +    EL
Sbjct:  216 ESLQEFRYYSEKLTFTPHTGLPGRVWMSQKPEWIENVSLEQNQLFLRSDIALEAGLKTALGVPLVLDDQVLAVLVFFKTEQRKPEERLIELVNAVATQLGSLIQRKKAEAALVKANIEL 334          
BLAST of Gchil7487.t1 vs. uniprot
Match: A0A2T1CPH9_9CYAN (GAF domain-containing protein n=1 Tax=Pleurocapsa sp. CCALA 161 TaxID=2107688 RepID=A0A2T1CPH9_9CYAN)

HSP 1 Score: 70.9 bits (172), Expect = 4.020e-11
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 0
Query:  220 LSKFAKASQEYEFHPRMGIPGRVWTSQRAEWLVDLSD---KDAFKRSEIAQQFGMKTCLAVPLKFGGHVHSVIAFYCTERRLCEAECLELANVLVK 312
            L  F + SQE+      G+PGRV+ +Q+ EW++D+S    +D+F R+ IA   G+KT  AVP+K    V  ++ F+  E R   AECL LA++++K
Sbjct:   58 LELFYECSQEFIMSKGEGLPGRVFLNQKPEWMLDVSSAESEDSFLRNTIAGVCGVKTGFAVPVKIEKEVLMIMVFFTCELRSYSAECLALADLVIK 153          
BLAST of Gchil7487.t1 vs. uniprot
Match: A0A2H2XLS2_9CYAN (Multi-sensor hybrid histidine kinase n=2 Tax=unclassified Calothrix TaxID=2619626 RepID=A0A2H2XLS2_9CYAN)

HSP 1 Score: 67.8 bits (164), Expect = 4.930e-10
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 0
Query:  220 LSKFAKASQEYEFHPRMGIPGRVWTSQRAEWLVDLS--DKDAFKRSEIAQQFGMKTCLAVPLKFGGHVHSVIAFY----CTERRLCEAECLELANVLVKCL 314
            L +F   S+ +   P +G+PGRVW+SQ+ EW++D S   +  F R  IA+ FG+KT L VP+   G V SV+ F+    C +R++ E     +   L  CL
Sbjct:   63 LQQFWFCSEAFILSPGVGLPGRVWSSQQPEWILDASAHSETYFLRHYIAKAFGIKTGLGVPILVNGQVISVLVFFQLEMCEQRQIIELVMAAVQVALKNCL 163          
BLAST of Gchil7487.t1 vs. uniprot
Match: UPI001950A484 (ATP-binding protein n=1 Tax=Spirulina major TaxID=270636 RepID=UPI001950A484)

HSP 1 Score: 70.1 bits (170), Expect = 1.620e-9
Identity = 34/114 (29.82%), Postives = 63/114 (55.26%), Query Frame = 0
Query:  223 FAKASQEYEFHPRMGIPGRVWTSQRAEWLVDLS--DKDAFKRSEIAQQFGMKTCLAVPLKFGGHVHSVIAFYCTERRLCEAECLELANVLVKCLEQVYTPSQAMSWQIGTEREL 334
            F   SQE ++ P +G  G+++ SQ+ EW+ D+S  +K+ F R E+A+QFG+K C  +P+     V +++ F+ T    C+   +++ NV+   L +     +A    +   R+L
Sbjct:  331 FLHRSQEIDWVPNIGFAGKIYASQKPEWIEDVSCANKEDFHRQEMAEQFGLKACFGIPILKNKRVLAILMFFKTTSLACDLHLVDIVNVVAAQLGEFMQRKRAEEKALKKTRQL 444          
BLAST of Gchil7487.t1 vs. uniprot
Match: A0A235IVC1_9NOSO (GAF domain-containing protein n=2 Tax=Nostocaceae TaxID=1162 RepID=A0A235IVC1_9NOSO)

HSP 1 Score: 65.1 bits (157), Expect = 6.280e-9
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 0
Query:  220 LSKFAKASQEYEFHPRMGIPGRVWTSQRAEWLVDLS--DKDAFKRSEIAQQFGMKTCLAVPLKFGGHVHSVIAFYCTERRLCEAE 302
            L KF   S+ +   P +G+PGRVW+SQ+ EW++D+S   ++ F R  IA+ FG+KT L VP+     V +V+ F+ +E  +CE +
Sbjct:   79 LQKFRFCSEAFILSPGVGLPGRVWSSQQPEWILDVSAHSENYFLRHYIAKAFGIKTGLGVPILAKAQVIAVLVFFRSE--ICEQD 161          
BLAST of Gchil7487.t1 vs. uniprot
Match: A0A845ZZM2_9CYAN (EAL domain-containing protein n=1 Tax=Leptolyngbya sp. SIO4C5 TaxID=2607774 RepID=A0A845ZZM2_9CYAN)

HSP 1 Score: 67.0 bits (162), Expect = 1.940e-8
Identity = 36/117 (30.77%), Postives = 64/117 (54.70%), Query Frame = 0
Query:  220 LSKFAKASQEYEFHPRMGIPGRVWTSQRAEWLVDLS--DKDAFKRSEIAQQFGMKTCLAVPLKFGGHVHSVIAFYCTERRLCEAECLELANVLVKCLEQVYTPSQAMSWQIGTEREL 334
            +++F + SQ+Y F   +G+PGRVW SQ+AEW+ D+S   ++ F R   A   G++T + VP+ FG    +V+ F+  E R    + ++L + +   L  +    Q       ++R+L
Sbjct:   75 IAQFGELSQQYRFPMGVGLPGRVWQSQQAEWMRDVSAVSEEQFLRIGPALAAGLRTGIGVPILFGSEPLAVLVFFMREARRASQQQVQLVSAIAAQLGAIMRLKQVKLALTESQRQL 191          
The following BLAST results are available for this feature:
BLAST of Gchil7487.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A2V3J3D5_9FLOR2.540e-12562.05BHLH domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3IV04_9FLOR7.770e-3432.95GAF domain-containing protein n=1 Tax=Gracilariops... [more]
R7QJ09_CHOCR8.080e-2628.84BHLH domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A1X6NUF4_PORUM2.700e-1440.00Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
UPI001683F77F1.670e-1136.97diguanylate cyclase n=1 Tax=Microcoleus sp. FACHB-... [more]
A0A2T1CPH9_9CYAN4.020e-1139.58GAF domain-containing protein n=1 Tax=Pleurocapsa ... [more]
A0A2H2XLS2_9CYAN4.930e-1037.62Multi-sensor hybrid histidine kinase n=2 Tax=uncla... [more]
UPI001950A4841.620e-929.82ATP-binding protein n=1 Tax=Spirulina major TaxID=... [more]
A0A235IVC1_9NOSO6.280e-940.00GAF domain-containing protein n=2 Tax=Nostocaceae ... [more]
A0A845ZZM2_9CYAN1.940e-830.77EAL domain-containing protein n=1 Tax=Leptolyngbya... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029016GAF-like domain superfamilyGENE3D3.30.450.40coord: 185..314
e-value: 3.6E-10
score: 41.8
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 35..109
e-value: 2.1E-5
score: 26.4
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 40..98
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 34..87
score: 9.737124
NoneNo IPR availableCDDcd00083bHLH_SFcoord: 38..89
e-value: 2.37358E-4
score: 36.3441
NoneNo IPR availableSUPERFAMILY55781GAF domain-likecoord: 227..311

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1489045..1490064 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7487.t1Gchil7487.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000007_pilon 1489045..1490064 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7487.t1 ID=Gchil7487.t1|Name=Gchil7487.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=340bp
MHPHLTQPNLASDISVTRTVSSPSHSLSAQKDSSGIVRRRHDARKTRATI
GDQFEQLRSVLPRAPDGKQLIAKAQILECALGVIRDLMSRATRLAVELAV
VSPESTRSWVSSVSGQGRRPLSSTVISVMKLFAARRNWRYAEWWTLDEKR
FKSGEETDVDHGRQVEVEKPAGVIEHPATVHGCVVRDSISVMRLGCTIIH
RTLEDEAQRTRHDFEEDERLSKFAKASQEYEFHPRMGIPGRVWTSQRAEW
LVDLSDKDAFKRSEIAQQFGMKTCLAVPLKFGGHVHSVIAFYCTERRLCE
AECLELANVLVKCLEQVYTPSQAMSWQIGTERELPSSPL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029016GAF-like_dom_sf
IPR036638HLH_DNA-bd_sf
IPR011598bHLH_dom