Gchil4048.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil4048.t1
Unique NameGchil4048.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length138
Homology
BLAST of Gchil4048.t1 vs. uniprot
Match: A0A2V3IFP8_9FLOR (Histone deacetylase complex subunit SAP30 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFP8_9FLOR)

HSP 1 Score: 140 bits (352), Expect = 6.660e-40
Identity = 77/93 (82.80%), Postives = 83/93 (89.25%), Query Frame = 0
Query:    1 MTASKRTS-----KPVSKSEPTLSLHTYVDLSKLRKASLKRYKKHFKLDVKADSKTELLEAVGRHFAQMPVREVDVARDFHTFWRLKAGRRVA 88
            MTASKR +     KP+S S+  LSL TYVDLSKLRKASLKRYKKHFKLDVKADSK+ELLEAVGRHFAQMPVREVDVARDFH+FWRL+AGRRVA
Sbjct:    1 MTASKRAAAKLAAKPLSDSK--LSLKTYVDLSKLRKASLKRYKKHFKLDVKADSKSELLEAVGRHFAQMPVREVDVARDFHSFWRLRAGRRVA 91          
BLAST of Gchil4048.t1 vs. uniprot
Match: A0A1X6NX01_PORUM (SAP30_Sin3_bdg domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NX01_PORUM)

HSP 1 Score: 77.8 bits (190), Expect = 4.400e-16
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 0
Query:   23 YVDLSKLRKASLKRYKKHFKLDVKADSKTELLEAVGRHFAQMPVREVDVARDFHTFWRLKAGRRVAAHAS 92
            YVDLSKL K SLKRY  HF ++ + ++K ELL+ V  HFAQMPV+E+ VARDFH F R   G+RV    S
Sbjct:   24 YVDLSKLHKNSLKRYLTHFGIEARGNTKVELLKIVTVHFAQMPVQELAVARDFHNFTRSDRGKRVLEKGS 93          
BLAST of Gchil4048.t1 vs. uniprot
Match: A0A5J4YN18_PORPP (SAP30_Sin3_bdg domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YN18_PORPP)

HSP 1 Score: 55.5 bits (132), Expect = 4.310e-7
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 0
Query:   22 TYVDLSKLRKASLKRYKKHFKLDVKAD--SKTELLEAVGRHFAQMPVREVDVARDFHTFW 79
            T +DLS+LRK+SLKRYK+HFK+ +     SK EL+ AV  HFA+M V E +V  +   F+
Sbjct:   13 TCIDLSRLRKSSLKRYKRHFKISMSVSNPSKAELVAAVSSHFAEMRVLEHEVFDELARFF 72          
The following BLAST results are available for this feature:
BLAST of Gchil4048.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IFP8_9FLOR6.660e-4082.80Histone deacetylase complex subunit SAP30 n=1 Tax=... [more]
A0A1X6NX01_PORUM4.400e-1657.14SAP30_Sin3_bdg domain-containing protein n=1 Tax=P... [more]
A0A5J4YN18_PORPP4.310e-750.00SAP30_Sin3_bdg domain-containing protein n=1 Tax=P... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038291SAP30, C-terminal domain superfamilyGENE3D6.10.160.20coord: 4..91
e-value: 2.4E-17
score: 64.6
IPR025718Histone deacetylase complex subunit SAP30, Sin3 binding domainPFAMPF13867SAP30_Sin3_bdgcoord: 29..75
e-value: 3.7E-13
score: 49.5
NoneNo IPR availablePANTHERPTHR13286:SF6HISTONE DEACETYLASE COMPLEX SUBUNIT SAP30Lcoord: 23..79
NoneNo IPR availableTMHMMTMhelixcoord: 114..136
NoneNo IPR availableTMHMMTMhelixcoord: 87..109
IPR024145Histone deacetylase complex subunit SAP30/SAP30-likePANTHERPTHR13286SAP30coord: 23..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:230558..231052 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4048.t1Gchil4048.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004373_pilon 230558..231052 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil4048.t1 ID=Gchil4048.t1|Name=Gchil4048.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=138bp
MTASKRTSKPVSKSEPTLSLHTYVDLSKLRKASLKRYKKHFKLDVKADSK
TELLEAVGRHFAQMPVREVDVARDFHTFWRLKAGRRVAAHASTLAAAAAV
VVHGPAAAASAAAATASAAAGSAAGAAGAATASASGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038291SAP30_C_sf
IPR025718SAP30_Sin3-bd
IPR024145His_deAcase_SAP30/SAP30L