Gchil4235.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4235.t1
Unique Name	Gchil4235.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	552

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:1592958..1594613 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	81824.XP_001747319.1
PFAMs	EXS
Max annot lvl	33154\|Opisthokonta
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006621,GO:0006807,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0019538,GO:0031984,GO:0032507,GO:0033036,GO:0033365,GO:0034613,GO:0034645,GO:0035437,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045185,GO:0051179,GO:0051235,GO:0051641,GO:0051651,GO:0065007,GO:0065008,GO:0070085,GO:0070727,GO:0070972,GO:0071704,GO:0072595,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue	5.41e-26
EggNOG OGs	COG5409@1\|root,KOG1162@2759\|Eukaryota,39U3F@33154\|Opisthokonta
Description	protein retention in ER lumen
COG category	U

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4235	Gchil4235	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 1592958..1594613 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4235.t1.stop1	Gchil4235.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 1592958..1592960 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4235.t1.CDS1	Gchil4235.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 1592958..1594613 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4235.t1.exon1	Gchil4235.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 1592958..1594613 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4235.t1.start1	Gchil4235.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 1594611..1594613 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4235.t1	Gchil4235.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 1592958..1594613 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:1592958..1594613-
coding sequence from alignment at tig00004373_pilon:1592958..1594613-

mRNA sequence

>Gchil4235.t1 ID=Gchil4235.t1|Name=Gchil4235.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=552bp
MSRDSPPLAPVPPPPTSDLPVVAAEPMPFLQCHLCHAHTQRALESSTRSH
TRPRAAPSNSEPTPSNAKPTPSNAEPTPSNAEPMSPAPVALSDAPGRSSS
IDQKGYLTVYDSDGFSEEAHGTAGAIVKRMGMFAYVLFFIVPLAYVALVF
AIVPLGDPTVPSISEQWVFIFVSNAAVAVAISYLYNATFLACARIERPFR
TSLIPLLAVFLAEIAFMAPVLLIHAIFDWIGIVALTVCYVALFLSLRVTY
NAQRELVHSFFRRFMFLIILYIPILSGYTIVYRETSSGTLQSFVAFMFTF
VTFVYRRVMLSKLDPFPLEISQLLSGFWVQNLGDLTTILAFPQVARPGVF
AAIFLSNVLANVAFLVFVSDPWIYKIRPTLKTYVLNGIKGNFPIPPIPEA
DESFDPRNRGHDANTGGYRRRQFRFFFFRLLSQAISMFMYLSISPMLRFG
LNKEYTPLATFSKEQYRHSMIYAASNLVFIGAVALVGYYYLNKRHHQTFH
EIREIHKHDLVHHTWVGLVTAIVTHNLILTIAIILSHYCIFSAFEGCVFK
T*

spliced messenger RNA

>Gchil4235.t1 ID=Gchil4235.t1|Name=Gchil4235.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1656bp|location=Sequence derived from alignment at tig00004373_pilon:1592958..1594613- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAGGGACTCGCCGCCGCTGGCGCCGGTCCCGCCTCCGCCCACGTC
CGATCTCCCCGTCGTCGCCGCGGAGCCCATGCCCTTTCTGCAATGTCATC
TCTGCCACGCACACACTCAGCGCGCGCTCGAATCCTCCACGCGCTCGCAC
ACGCGCCCGCGCGCTGCGCCGTCTAACTCTGAGCCCACACCGTCCAACGC
TAAGCCCACGCCGTCCAACGCTGAGCCCACGCCATCCAACGCTGAGCCCA
TGTCTCCCGCGCCCGTCGCCCTGTCCGACGCCCCGGGCCGGTCCAGCTCC
ATCGACCAAAAGGGCTACCTCACCGTGTACGATTCCGATGGCTTTTCCGA
AGAGGCTCACGGAACCGCCGGCGCTATAGTCAAGCGCATGGGCATGTTTG
CGTATGTGCTGTTCTTCATTGTGCCGCTGGCTTATGTCGCGCTCGTGTTC
GCCATTGTGCCGCTGGGTGACCCCACCGTGCCCTCTATTTCTGAGCAATG
GGTTTTCATCTTCGTGTCCAATGCTGCCGTTGCCGTTGCTATATCCTACT
TGTACAACGCTACCTTTCTGGCGTGCGCTCGCATCGAGCGCCCGTTCCGC
ACCTCGCTCATCCCCTTGCTCGCCGTCTTTCTGGCAGAGATTGCTTTCAT
GGCACCGGTTCTGCTCATCCACGCCATCTTTGATTGGATTGGCATAGTCG
CCCTCACCGTCTGTTATGTCGCCTTGTTTTTGTCCCTAAGAGTCACGTAC
AACGCCCAGCGAGAGCTTGTGCACTCCTTCTTCAGGCGCTTCATGTTCTT
AATTATTCTCTACATTCCAATATTGTCCGGCTACACCATTGTGTACCGAG
AAACCTCCTCCGGCACTTTGCAGTCCTTTGTCGCGTTTATGTTTACCTTC
GTTACCTTTGTGTATAGACGTGTTATGCTTTCAAAGCTGGACCCATTTCC
ACTTGAAATCAGTCAGCTTCTTTCCGGTTTCTGGGTACAGAATTTGGGAG
ACCTCACCACCATTTTGGCCTTTCCGCAGGTAGCTCGCCCAGGCGTGTTC
GCCGCCATCTTTCTCTCAAACGTACTGGCTAATGTCGCCTTTCTCGTCTT
CGTTTCCGACCCATGGATCTATAAGATTCGTCCCACGTTAAAAACATATG
TGCTCAACGGGATAAAGGGAAACTTTCCGATTCCCCCCATCCCCGAAGCG
GACGAATCGTTTGACCCACGGAATAGAGGCCATGATGCAAATACCGGAGG
ATATCGCAGACGGCAATTTCGCTTCTTTTTCTTCCGGTTGCTGTCGCAAG
CTATTTCTATGTTCATGTACCTCAGCATCTCACCCATGCTGCGCTTCGGA
CTGAACAAGGAGTACACGCCGCTGGCCACGTTCAGCAAGGAGCAGTATAG
GCATTCTATGATCTATGCCGCCTCCAACCTGGTTTTTATTGGCGCTGTGG
CGCTGGTGGGGTATTATTACTTGAACAAGCGACATCATCAGACGTTCCAC
GAGATTCGTGAGATTCACAAGCATGACCTGGTGCATCACACCTGGGTTGG
GTTGGTAACGGCAATCGTCACACATAATTTGATTTTGACCATCGCTATCA
TCTTGTCACATTACTGCATTTTTTCTGCGTTCGAGGGGTGTGTTTTCAAA
ACTTGA

protein sequence of Gchil4235.t1

>Gchil4235.t1 ID=Gchil4235.t1|Name=Gchil4235.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=552bp
MSRDSPPLAPVPPPPTSDLPVVAAEPMPFLQCHLCHAHTQRALESSTRSH
TRPRAAPSNSEPTPSNAKPTPSNAEPTPSNAEPMSPAPVALSDAPGRSSS
IDQKGYLTVYDSDGFSEEAHGTAGAIVKRMGMFAYVLFFIVPLAYVALVF
AIVPLGDPTVPSISEQWVFIFVSNAAVAVAISYLYNATFLACARIERPFR
TSLIPLLAVFLAEIAFMAPVLLIHAIFDWIGIVALTVCYVALFLSLRVTY
NAQRELVHSFFRRFMFLIILYIPILSGYTIVYRETSSGTLQSFVAFMFTF
VTFVYRRVMLSKLDPFPLEISQLLSGFWVQNLGDLTTILAFPQVARPGVF
AAIFLSNVLANVAFLVFVSDPWIYKIRPTLKTYVLNGIKGNFPIPPIPEA
DESFDPRNRGHDANTGGYRRRQFRFFFFRLLSQAISMFMYLSISPMLRFG
LNKEYTPLATFSKEQYRHSMIYAASNLVFIGAVALVGYYYLNKRHHQTFH
EIREIHKHDLVHHTWVGLVTAIVTHNLILTIAIILSHYCIFSAFEGCVFK
T*

mRNA from alignment at tig00004373_pilon:1592958..1594613-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4235.t1 ID=Gchil4235.t1|Name=Gchil4235.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1656bp|location=Sequence derived from alignment at tig00004373_pilon:1592958..1594613- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCAGGGACTCGCCGCCGCTGGCGCCGGTCCCGCCTCCGCCCACGTC
CGATCTCCCCGTCGTCGCCGCGGAGCCCATGCCCTTTCTGCAATGTCATC
TCTGCCACGCACACACTCAGCGCGCGCTCGAATCCTCCACGCGCTCGCAC
ACGCGCCCGCGCGCTGCGCCGTCTAACTCTGAGCCCACACCGTCCAACGC
TAAGCCCACGCCGTCCAACGCTGAGCCCACGCCATCCAACGCTGAGCCCA
TGTCTCCCGCGCCCGTCGCCCTGTCCGACGCCCCGGGCCGGTCCAGCTCC
ATCGACCAAAAGGGCTACCTCACCGTGTACGATTCCGATGGCTTTTCCGA
AGAGGCTCACGGAACCGCCGGCGCTATAGTCAAGCGCATGGGCATGTTTG
CGTATGTGCTGTTCTTCATTGTGCCGCTGGCTTATGTCGCGCTCGTGTTC
GCCATTGTGCCGCTGGGTGACCCCACCGTGCCCTCTATTTCTGAGCAATG
GGTTTTCATCTTCGTGTCCAATGCTGCCGTTGCCGTTGCTATATCCTACT
TGTACAACGCTACCTTTCTGGCGTGCGCTCGCATCGAGCGCCCGTTCCGC
ACCTCGCTCATCCCCTTGCTCGCCGTCTTTCTGGCAGAGATTGCTTTCAT
GGCACCGGTTCTGCTCATCCACGCCATCTTTGATTGGATTGGCATAGTCG
CCCTCACCGTCTGTTATGTCGCCTTGTTTTTGTCCCTAAGAGTCACGTAC
AACGCCCAGCGAGAGCTTGTGCACTCCTTCTTCAGGCGCTTCATGTTCTT
AATTATTCTCTACATTCCAATATTGTCCGGCTACACCATTGTGTACCGAG
AAACCTCCTCCGGCACTTTGCAGTCCTTTGTCGCGTTTATGTTTACCTTC
GTTACCTTTGTGTATAGACGTGTTATGCTTTCAAAGCTGGACCCATTTCC
ACTTGAAATCAGTCAGCTTCTTTCCGGTTTCTGGGTACAGAATTTGGGAG
ACCTCACCACCATTTTGGCCTTTCCGCAGGTAGCTCGCCCAGGCGTGTTC
GCCGCCATCTTTCTCTCAAACGTACTGGCTAATGTCGCCTTTCTCGTCTT
CGTTTCCGACCCATGGATCTATAAGATTCGTCCCACGTTAAAAACATATG
TGCTCAACGGGATAAAGGGAAACTTTCCGATTCCCCCCATCCCCGAAGCG
GACGAATCGTTTGACCCACGGAATAGAGGCCATGATGCAAATACCGGAGG
ATATCGCAGACGGCAATTTCGCTTCTTTTTCTTCCGGTTGCTGTCGCAAG
CTATTTCTATGTTCATGTACCTCAGCATCTCACCCATGCTGCGCTTCGGA
CTGAACAAGGAGTACACGCCGCTGGCCACGTTCAGCAAGGAGCAGTATAG
GCATTCTATGATCTATGCCGCCTCCAACCTGGTTTTTATTGGCGCTGTGG
CGCTGGTGGGGTATTATTACTTGAACAAGCGACATCATCAGACGTTCCAC
GAGATTCGTGAGATTCACAAGCATGACCTGGTGCATCACACCTGGGTTGG
GTTGGTAACGGCAATCGTCACACATAATTTGATTTTGACCATCGCTATCA
TCTTGTCACATTACTGCATTTTTTCTGCGTTCGAGGGGTGTGTTTTCAAA
ACTTGA

Coding sequence (CDS) from alignment at tig00004373_pilon:1592958..1594613-

>Gchil4235.t1 ID=Gchil4235.t1|Name=Gchil4235.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1656bp|location=Sequence derived from alignment at tig00004373_pilon:1592958..1594613- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCAGGGACTCGCCGCCGCTGGCGCCGGTCCCGCCTCCGCCCACGTC
CGATCTCCCCGTCGTCGCCGCGGAGCCCATGCCCTTTCTGCAATGTCATC
TCTGCCACGCACACACTCAGCGCGCGCTCGAATCCTCCACGCGCTCGCAC
ACGCGCCCGCGCGCTGCGCCGTCTAACTCTGAGCCCACACCGTCCAACGC
TAAGCCCACGCCGTCCAACGCTGAGCCCACGCCATCCAACGCTGAGCCCA
TGTCTCCCGCGCCCGTCGCCCTGTCCGACGCCCCGGGCCGGTCCAGCTCC
ATCGACCAAAAGGGCTACCTCACCGTGTACGATTCCGATGGCTTTTCCGA
AGAGGCTCACGGAACCGCCGGCGCTATAGTCAAGCGCATGGGCATGTTTG
CGTATGTGCTGTTCTTCATTGTGCCGCTGGCTTATGTCGCGCTCGTGTTC
GCCATTGTGCCGCTGGGTGACCCCACCGTGCCCTCTATTTCTGAGCAATG
GGTTTTCATCTTCGTGTCCAATGCTGCCGTTGCCGTTGCTATATCCTACT
TGTACAACGCTACCTTTCTGGCGTGCGCTCGCATCGAGCGCCCGTTCCGC
ACCTCGCTCATCCCCTTGCTCGCCGTCTTTCTGGCAGAGATTGCTTTCAT
GGCACCGGTTCTGCTCATCCACGCCATCTTTGATTGGATTGGCATAGTCG
CCCTCACCGTCTGTTATGTCGCCTTGTTTTTGTCCCTAAGAGTCACGTAC
AACGCCCAGCGAGAGCTTGTGCACTCCTTCTTCAGGCGCTTCATGTTCTT
AATTATTCTCTACATTCCAATATTGTCCGGCTACACCATTGTGTACCGAG
AAACCTCCTCCGGCACTTTGCAGTCCTTTGTCGCGTTTATGTTTACCTTC
GTTACCTTTGTGTATAGACGTGTTATGCTTTCAAAGCTGGACCCATTTCC
ACTTGAAATCAGTCAGCTTCTTTCCGGTTTCTGGGTACAGAATTTGGGAG
ACCTCACCACCATTTTGGCCTTTCCGCAGGTAGCTCGCCCAGGCGTGTTC
GCCGCCATCTTTCTCTCAAACGTACTGGCTAATGTCGCCTTTCTCGTCTT
CGTTTCCGACCCATGGATCTATAAGATTCGTCCCACGTTAAAAACATATG
TGCTCAACGGGATAAAGGGAAACTTTCCGATTCCCCCCATCCCCGAAGCG
GACGAATCGTTTGACCCACGGAATAGAGGCCATGATGCAAATACCGGAGG
ATATCGCAGACGGCAATTTCGCTTCTTTTTCTTCCGGTTGCTGTCGCAAG
CTATTTCTATGTTCATGTACCTCAGCATCTCACCCATGCTGCGCTTCGGA
CTGAACAAGGAGTACACGCCGCTGGCCACGTTCAGCAAGGAGCAGTATAG
GCATTCTATGATCTATGCCGCCTCCAACCTGGTTTTTATTGGCGCTGTGG
CGCTGGTGGGGTATTATTACTTGAACAAGCGACATCATCAGACGTTCCAC
GAGATTCGTGAGATTCACAAGCATGACCTGGTGCATCACACCTGGGTTGG
GTTGGTAACGGCAATCGTCACACATAATTTGATTTTGACCATCGCTATCA
TCTTGTCACATTACTGCATTTTTTCTGCGTTCGAGGGGTGTGTTTTCAAA
ACTTGA