Gchil4106.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4106.t1
Unique NameGchil4106.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length151
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:799332..800046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog37727.XP_002147726.1
Preferred namendk1
PFAMsNDK
Max annot lvl4751|Fungi
KEGG rclassRC00002
KEGG koko:K00940
KEGG ReactionR00124,R00139,R00156,R00330,R00570,R00722,R01137,R01857,R02093,R02326,R02331,R03530,R11894,R11895
KEGG Pathwayko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00983,map01100,map01110,map01130,map04016
KEGG ModuleM00049,M00050,M00052,M00053
GOsGO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005829,GO:0006139,GO:0006165,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009132,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016049,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0040007,GO:0042455,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046939,GO:0050896,GO:0051211,GO:0051716,GO:0055086,GO:0061508,GO:0070013,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue4.81e-64
EggNOG OGsCOG0105@1|root,KOG0888@2759|Eukaryota,3A1MB@33154|Opisthokonta,3P274@4751|Fungi,3QU12@4890|Ascomycota,20GAA@147545|Eurotiomycetes,3S39E@5042|Eurotiales
EC2.7.4.6
DescriptionNucleoside diphosphate kinase
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4106Gchil4106Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 799332..800046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4106.t1Gchil4106.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 799332..800046 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4106.t1.stop1Gchil4106.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 799332..799334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4106.t1.CDS1Gchil4106.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 799332..799530 -
Gchil4106.t1.CDS2Gchil4106.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 799623..799726 -
Gchil4106.t1.CDS3Gchil4106.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 799816..799928 -
Gchil4106.t1.CDS4Gchil4106.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 800010..800046 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4106.t1.exon1Gchil4106.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 799332..799530 -
Gchil4106.t1.exon2Gchil4106.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 799623..799726 -
Gchil4106.t1.exon3Gchil4106.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 799816..799928 -
Gchil4106.t1.exon4Gchil4106.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 800010..800046 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4106.t1.intron1Gchil4106.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 799531..799622 -
Gchil4106.t1.intron2Gchil4106.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 799727..799815 -
Gchil4106.t1.intron3Gchil4106.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 799929..800009 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4106.t1.start1Gchil4106.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 800044..800046 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4106.t1 ID=Gchil4106.t1|Name=Gchil4106.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=151bp
MAEQSFIMIKPDGVQRGLVSEIIGRFERRGYKLVAMKLIKPTLKLAEEHY
ADLSERSFFPALTGFLSSSPVVAMVWSGEDIVVQGRAMIGATNPLKSSPG
TIRGDLAIVTGKNIIHGSDSVENAKKEISLWFSEDELCEYEKCTETWIYE
*
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spliced messenger RNA

>Gchil4106.t1 ID=Gchil4106.t1|Name=Gchil4106.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=453bp|location=Sequence derived from alignment at tig00004373_pilon:799332..800046- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAGCAATCTTTCATCATGATCAAGCCTGATGGCGTCCAACGTGG
TCTTGTCTCCGAAATCATTGGTCGTTTCGAGCGACGTGGCTATAAGCTGG
TTGCGATGAAGTTAATAAAGCCGACCTTGAAGCTTGCTGAAGAACACTAC
GCCGATTTGAGTGAAAGATCTTTTTTCCCCGCTTTGACAGGCTTTCTCTC
TAGCTCTCCCGTCGTAGCCATGGTGTGGAGTGGTGAGGATATTGTCGTGC
AAGGACGTGCGATGATTGGGGCTACAAACCCTCTGAAATCTTCTCCAGGT
ACTATTCGGGGCGACCTTGCTATTGTCACTGGAAAGAATATTATTCACGG
CTCTGACTCTGTGGAAAACGCAAAGAAGGAAATTTCTCTCTGGTTTAGTG
AAGACGAGTTATGCGAATATGAAAAGTGTACTGAGACGTGGATTTACGAA
TAA
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protein sequence of Gchil4106.t1

>Gchil4106.t1 ID=Gchil4106.t1|Name=Gchil4106.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=151bp
MAEQSFIMIKPDGVQRGLVSEIIGRFERRGYKLVAMKLIKPTLKLAEEHY
ADLSERSFFPALTGFLSSSPVVAMVWSGEDIVVQGRAMIGATNPLKSSPG
TIRGDLAIVTGKNIIHGSDSVENAKKEISLWFSEDELCEYEKCTETWIYE
*
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mRNA from alignment at tig00004373_pilon:799332..800046-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4106.t1 ID=Gchil4106.t1|Name=Gchil4106.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=715bp|location=Sequence derived from alignment at tig00004373_pilon:799332..800046- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGAGCAATCTTTCATCATGATCAAGCCTGATGGTGCGTGAGATGC
GTCCCCTTCCCGCATGTACAATTCATCCTACAATACTGACGTTCTGTTCA
ACGTGAACATGTGAAAAGGCGTCCAACGTGGTCTTGTCTCCGAAATCATT
GGTCGTTTCGAGCGACGTGGCTATAAGCTGGTTGCGATGAAGTTAATAAA
GCCGACCTTGAAGCTTGCTGAAGAACACTACGTGCGTCAGCGCCATTCCG
CTCAATTTTTACCGAGTTTCATTTTAGCTGATGACTAACTCTAACTCTAA
TGTTCAATTTGGTAACTCAGGCCGATTTGAGTGAAAGATCTTTTTTCCCC
GCTTTGACAGGCTTTCTCTCTAGCTCTCCCGTCGTAGCCATGGTGTGGAG
TGGTGAGGATATTGTCGTGCAAGGGTAAGTTGAAGTTACGATTTCATTTC
TTTCAGAGCGCATACTTGTCCAGCCAACGTTCCAACGCTGACGTTGATAA
TGCATGACTTGTGAAGACGTGCGATGATTGGGGCTACAAACCCTCTGAAA
TCTTCTCCAGGTACTATTCGGGGCGACCTTGCTATTGTCACTGGAAAGAA
TATTATTCACGGCTCTGACTCTGTGGAAAACGCAAAGAAGGAAATTTCTC
TCTGGTTTAGTGAAGACGAGTTATGCGAATATGAAAAGTGTACTGAGACG
TGGATTTACGAATAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:799332..800046-

>Gchil4106.t1 ID=Gchil4106.t1|Name=Gchil4106.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=453bp|location=Sequence derived from alignment at tig00004373_pilon:799332..800046- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGAGCAATCTTTCATCATGATCAAGCCTGATGGCGTCCAACGTGG
TCTTGTCTCCGAAATCATTGGTCGTTTCGAGCGACGTGGCTATAAGCTGG
TTGCGATGAAGTTAATAAAGCCGACCTTGAAGCTTGCTGAAGAACACTAC
GCCGATTTGAGTGAAAGATCTTTTTTCCCCGCTTTGACAGGCTTTCTCTC
TAGCTCTCCCGTCGTAGCCATGGTGTGGAGTGGTGAGGATATTGTCGTGC
AAGGACGTGCGATGATTGGGGCTACAAACCCTCTGAAATCTTCTCCAGGT
ACTATTCGGGGCGACCTTGCTATTGTCACTGGAAAGAATATTATTCACGG
CTCTGACTCTGTGGAAAACGCAAAGAAGGAAATTTCTCTCTGGTTTAGTG
AAGACGAGTTATGCGAATATGAAAAGTGTACTGAGACGTGGATTTACGAA
TAA
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