Gchil4035.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4035.t1
Unique NameGchil4035.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length434
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:185660..186961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1242864.D187_003665
Max annot lvl28221|Deltaproteobacteria
Evalue1.24e-23
EggNOG OGsCOG1075@1|root,COG1075@2|Bacteria,1NIPT@1224|Proteobacteria,42XSQ@68525|delta/epsilon subdivisions,2WSYF@28221|Deltaproteobacteria
Descriptionacetyltransferases and hydrolases with the alpha beta hydrolase fold
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4035Gchil4035Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 185660..186961 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4035.t1.stop1Gchil4035.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 185660..185662 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4035.t1.CDS1Gchil4035.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 185660..186961 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4035.t1.exon1Gchil4035.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 185660..186961 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4035.t1.start1Gchil4035.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 186959..186961 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4035.t1Gchil4035.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 185660..186961 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4035.t1 ID=Gchil4035.t1|Name=Gchil4035.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=434bp
MNFSGVSKRRRGVSFGAVKFALFEGEDPVKLKVQLVDRSSKLPGLMSVFS
DQAIDLKEIKDLLCSCSDDCKIHVLQYQMSDRGPVNRKIILRVLIHLRTW
KPKAASNNITHHFLNTLRRVDEMSLHFKDSFPEAEKLTYLLVGGLFTDHY
PTYFEKNIQYLQETLCLPRVQSIPIHTEGIVKRNAKIIKDSVVKTCRGAK
SAVLIGHSKGGIDATAVLQVNPEVIPFIFRIITFQAPFGGTFLVHFVAQS
KIVTSTIKGIIEGLWKGDKQAMQDMCYSSRLKALGLFSNPIENTSHAAQD
AGVGETLVSRLVDEISQPVSTPDIDVFRRIPIVSFGSFASFNLLSIRSAA
TAAGIASMSPAAKAVLDHTGFLCDGLVVLNDARIPFSDFVSLNDMMHTEP
ALYVPGTNYPPGKLTASALVILFHKTRRAQGGK*
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spliced messenger RNA

>Gchil4035.t1 ID=Gchil4035.t1|Name=Gchil4035.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1302bp|location=Sequence derived from alignment at tig00004373_pilon:185660..186961- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTTCTCTGGTGTTTCGAAGAGACGACGAGGCGTCAGTTTTGGAGC
CGTGAAGTTTGCTCTCTTTGAAGGAGAAGATCCTGTAAAGTTGAAGGTAC
AGTTGGTTGACAGAAGTTCTAAACTCCCAGGTCTAATGAGTGTATTCTCT
GACCAGGCAATTGATCTGAAAGAAATCAAGGATCTGTTGTGTTCTTGCAG
CGACGATTGCAAAATTCATGTACTGCAATATCAAATGAGTGACCGTGGTC
CGGTGAATAGAAAGATAATCTTGCGGGTGCTCATACACTTACGAACATGG
AAACCGAAAGCTGCGAGTAATAACATAACGCACCACTTCCTGAATACTCT
GCGCCGCGTTGATGAAATGTCTCTACACTTTAAAGACTCTTTTCCAGAGG
CTGAAAAACTGACATATCTCCTTGTTGGTGGGTTGTTTACTGATCACTAC
CCAACATACTTTGAGAAGAACATCCAATATCTGCAAGAAACCCTATGTCT
GCCTCGAGTACAGTCTATACCAATACACACAGAAGGAATCGTTAAAAGGA
ACGCAAAGATAATCAAAGATTCTGTTGTAAAGACCTGCCGAGGGGCTAAG
TCAGCTGTGTTGATAGGGCATTCGAAAGGTGGTATTGATGCCACTGCTGT
TTTACAGGTGAACCCTGAAGTAATACCTTTCATTTTCCGTATTATTACCT
TTCAAGCTCCCTTCGGTGGTACGTTCCTCGTCCATTTTGTCGCACAAAGC
AAAATTGTCACGAGTACAATCAAGGGAATCATAGAAGGCTTATGGAAAGG
AGATAAGCAAGCTATGCAAGACATGTGCTATTCGTCCCGTCTCAAAGCTC
TTGGACTTTTTTCGAATCCTATTGAGAACACGAGCCATGCTGCGCAAGAT
GCAGGGGTTGGAGAAACACTCGTAAGTCGCCTGGTCGATGAAATATCGCA
ACCGGTTTCCACCCCTGACATTGATGTCTTTAGGCGTATACCCATTGTAA
GTTTCGGAAGCTTTGCTTCGTTTAACCTGTTAAGTATTCGGAGTGCTGCA
ACAGCTGCGGGAATTGCATCCATGTCACCAGCAGCTAAAGCTGTACTAGA
CCATACTGGTTTTCTTTGCGATGGGCTAGTGGTTTTGAATGATGCCAGAA
TACCTTTCTCGGATTTTGTCTCACTTAATGACATGATGCACACCGAGCCT
GCTCTTTATGTCCCTGGAACGAATTATCCTCCGGGAAAACTCACCGCTTC
GGCCCTAGTTATATTGTTTCATAAGACTCGACGCGCGCAAGGAGGGAAGT
AG
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protein sequence of Gchil4035.t1

>Gchil4035.t1 ID=Gchil4035.t1|Name=Gchil4035.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=434bp
MNFSGVSKRRRGVSFGAVKFALFEGEDPVKLKVQLVDRSSKLPGLMSVFS
DQAIDLKEIKDLLCSCSDDCKIHVLQYQMSDRGPVNRKIILRVLIHLRTW
KPKAASNNITHHFLNTLRRVDEMSLHFKDSFPEAEKLTYLLVGGLFTDHY
PTYFEKNIQYLQETLCLPRVQSIPIHTEGIVKRNAKIIKDSVVKTCRGAK
SAVLIGHSKGGIDATAVLQVNPEVIPFIFRIITFQAPFGGTFLVHFVAQS
KIVTSTIKGIIEGLWKGDKQAMQDMCYSSRLKALGLFSNPIENTSHAAQD
AGVGETLVSRLVDEISQPVSTPDIDVFRRIPIVSFGSFASFNLLSIRSAA
TAAGIASMSPAAKAVLDHTGFLCDGLVVLNDARIPFSDFVSLNDMMHTEP
ALYVPGTNYPPGKLTASALVILFHKTRRAQGGK*
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mRNA from alignment at tig00004373_pilon:185660..186961-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4035.t1 ID=Gchil4035.t1|Name=Gchil4035.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1302bp|location=Sequence derived from alignment at tig00004373_pilon:185660..186961- (Gracilaria chilensis NLEC103_M9 male)
ATGAATTTCTCTGGTGTTTCGAAGAGACGACGAGGCGTCAGTTTTGGAGC
CGTGAAGTTTGCTCTCTTTGAAGGAGAAGATCCTGTAAAGTTGAAGGTAC
AGTTGGTTGACAGAAGTTCTAAACTCCCAGGTCTAATGAGTGTATTCTCT
GACCAGGCAATTGATCTGAAAGAAATCAAGGATCTGTTGTGTTCTTGCAG
CGACGATTGCAAAATTCATGTACTGCAATATCAAATGAGTGACCGTGGTC
CGGTGAATAGAAAGATAATCTTGCGGGTGCTCATACACTTACGAACATGG
AAACCGAAAGCTGCGAGTAATAACATAACGCACCACTTCCTGAATACTCT
GCGCCGCGTTGATGAAATGTCTCTACACTTTAAAGACTCTTTTCCAGAGG
CTGAAAAACTGACATATCTCCTTGTTGGTGGGTTGTTTACTGATCACTAC
CCAACATACTTTGAGAAGAACATCCAATATCTGCAAGAAACCCTATGTCT
GCCTCGAGTACAGTCTATACCAATACACACAGAAGGAATCGTTAAAAGGA
ACGCAAAGATAATCAAAGATTCTGTTGTAAAGACCTGCCGAGGGGCTAAG
TCAGCTGTGTTGATAGGGCATTCGAAAGGTGGTATTGATGCCACTGCTGT
TTTACAGGTGAACCCTGAAGTAATACCTTTCATTTTCCGTATTATTACCT
TTCAAGCTCCCTTCGGTGGTACGTTCCTCGTCCATTTTGTCGCACAAAGC
AAAATTGTCACGAGTACAATCAAGGGAATCATAGAAGGCTTATGGAAAGG
AGATAAGCAAGCTATGCAAGACATGTGCTATTCGTCCCGTCTCAAAGCTC
TTGGACTTTTTTCGAATCCTATTGAGAACACGAGCCATGCTGCGCAAGAT
GCAGGGGTTGGAGAAACACTCGTAAGTCGCCTGGTCGATGAAATATCGCA
ACCGGTTTCCACCCCTGACATTGATGTCTTTAGGCGTATACCCATTGTAA
GTTTCGGAAGCTTTGCTTCGTTTAACCTGTTAAGTATTCGGAGTGCTGCA
ACAGCTGCGGGAATTGCATCCATGTCACCAGCAGCTAAAGCTGTACTAGA
CCATACTGGTTTTCTTTGCGATGGGCTAGTGGTTTTGAATGATGCCAGAA
TACCTTTCTCGGATTTTGTCTCACTTAATGACATGATGCACACCGAGCCT
GCTCTTTATGTCCCTGGAACGAATTATCCTCCGGGAAAACTCACCGCTTC
GGCCCTAGTTATATTGTTTCATAAGACTCGACGCGCGCAAGGAGGGAAGT
AG
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Coding sequence (CDS) from alignment at tig00004373_pilon:185660..186961-

>Gchil4035.t1 ID=Gchil4035.t1|Name=Gchil4035.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1302bp|location=Sequence derived from alignment at tig00004373_pilon:185660..186961- (Gracilaria chilensis NLEC103_M9 male)
ATGAATTTCTCTGGTGTTTCGAAGAGACGACGAGGCGTCAGTTTTGGAGC
CGTGAAGTTTGCTCTCTTTGAAGGAGAAGATCCTGTAAAGTTGAAGGTAC
AGTTGGTTGACAGAAGTTCTAAACTCCCAGGTCTAATGAGTGTATTCTCT
GACCAGGCAATTGATCTGAAAGAAATCAAGGATCTGTTGTGTTCTTGCAG
CGACGATTGCAAAATTCATGTACTGCAATATCAAATGAGTGACCGTGGTC
CGGTGAATAGAAAGATAATCTTGCGGGTGCTCATACACTTACGAACATGG
AAACCGAAAGCTGCGAGTAATAACATAACGCACCACTTCCTGAATACTCT
GCGCCGCGTTGATGAAATGTCTCTACACTTTAAAGACTCTTTTCCAGAGG
CTGAAAAACTGACATATCTCCTTGTTGGTGGGTTGTTTACTGATCACTAC
CCAACATACTTTGAGAAGAACATCCAATATCTGCAAGAAACCCTATGTCT
GCCTCGAGTACAGTCTATACCAATACACACAGAAGGAATCGTTAAAAGGA
ACGCAAAGATAATCAAAGATTCTGTTGTAAAGACCTGCCGAGGGGCTAAG
TCAGCTGTGTTGATAGGGCATTCGAAAGGTGGTATTGATGCCACTGCTGT
TTTACAGGTGAACCCTGAAGTAATACCTTTCATTTTCCGTATTATTACCT
TTCAAGCTCCCTTCGGTGGTACGTTCCTCGTCCATTTTGTCGCACAAAGC
AAAATTGTCACGAGTACAATCAAGGGAATCATAGAAGGCTTATGGAAAGG
AGATAAGCAAGCTATGCAAGACATGTGCTATTCGTCCCGTCTCAAAGCTC
TTGGACTTTTTTCGAATCCTATTGAGAACACGAGCCATGCTGCGCAAGAT
GCAGGGGTTGGAGAAACACTCGTAAGTCGCCTGGTCGATGAAATATCGCA
ACCGGTTTCCACCCCTGACATTGATGTCTTTAGGCGTATACCCATTGTAA
GTTTCGGAAGCTTTGCTTCGTTTAACCTGTTAAGTATTCGGAGTGCTGCA
ACAGCTGCGGGAATTGCATCCATGTCACCAGCAGCTAAAGCTGTACTAGA
CCATACTGGTTTTCTTTGCGATGGGCTAGTGGTTTTGAATGATGCCAGAA
TACCTTTCTCGGATTTTGTCTCACTTAATGACATGATGCACACCGAGCCT
GCTCTTTATGTCCCTGGAACGAATTATCCTCCGGGAAAACTCACCGCTTC
GGCCCTAGTTATATTGTTTCATAAGACTCGACGCGCGCAAGGAGGGAAGT
AG
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