Gchil4044.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4044.t1
Unique NameGchil4044.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length293
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:219811..220807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3847.GLYMA19G42790.1
PFAMsC2,Copine
Max annot lvl35493|Streptophyta
GOsGO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009987,GO:0010118,GO:0010941,GO:0016020,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0060548,GO:0065007,GO:0071944,GO:0090332
Evalue1.88e-17
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota,37MKV@33090|Viridiplantae,3G9QY@35493|Streptophyta,4JGEK@91835|fabids
DescriptionBONZAI 3-like
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4044Gchil4044Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 219811..220807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4044.t1Gchil4044.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 219811..220807 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4044.t1.stop1Gchil4044.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 219811..219813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4044.t1.CDS1Gchil4044.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 219811..220541 -
Gchil4044.t1.CDS2Gchil4044.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 220660..220807 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4044.t1.exon1Gchil4044.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 219811..220541 -
Gchil4044.t1.exon2Gchil4044.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 220660..220807 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4044.t1.intron1Gchil4044.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 220542..220659 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4044.t1.start1Gchil4044.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 220805..220807 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4044.t1 ID=Gchil4044.t1|Name=Gchil4044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=293bp
MARGEKVQSIGNQLDIQIEASNLANMDVFSLSDPFALLEEQENGHWEEIG
RTETIWDVLNPKWVRTFVLPAETPVGLPLRVTIYDRDSKTQNLDKQEVIG
SCVCRVEDIMKEGCNGKTMELENKDLKETGSVTVIGELYDPAENDHEIFL
GRCKFRNNSFFGMFLIRPYIVIYRRRANNEWAPIFRSSPRKRGEDAAFSE
DLLHRAKLRTYKKNGGHVEDTPLRIELRSHKSITEHKLIGAVQMSLGSLR
RQGERKKISLGLAGESVGELIVTRATLADNSSSFDFEVCFRS*
back to top

spliced messenger RNA

>Gchil4044.t1 ID=Gchil4044.t1|Name=Gchil4044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=879bp|location=Sequence derived from alignment at tig00004373_pilon:219811..220807- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAGAGGAGAAAAAGTTCAATCAATTGGGAACCAGTTGGATATCCA
GATCGAGGCCTCCAATTTGGCCAACATGGATGTTTTTTCCCTGAGTGATC
CGTTTGCTCTTTTGGAGGAGCAAGAGAACGGACATTGGGAGGAGATTGGG
CGTACTGAAACAATATGGGATGTACTGAATCCAAAATGGGTTCGAACTTT
TGTGCTCCCAGCCGAAACTCCTGTTGGTCTTCCTCTCCGAGTGACAATTT
ATGATCGAGACTCGAAGACCCAAAACCTTGACAAGCAGGAGGTTATAGGG
AGCTGCGTGTGTCGTGTGGAGGACATCATGAAGGAGGGATGTAATGGGAA
AACGATGGAACTTGAAAATAAAGACCTAAAAGAAACTGGTTCAGTCACGG
TCATAGGAGAATTGTATGATCCGGCAGAGAATGATCATGAGATATTCTTG
GGCCGGTGCAAGTTTAGAAACAACTCCTTTTTTGGAATGTTCTTGATAAG
ACCATATATCGTGATTTACAGAAGAAGAGCGAACAATGAGTGGGCACCAA
TATTTCGATCTTCTCCGAGAAAGAGGGGTGAGGATGCCGCATTTTCAGAG
GACTTATTGCATCGAGCCAAACTCAGAACTTATAAGAAGAATGGCGGACA
TGTTGAGGATACGCCACTGCGTATAGAGCTGCGCTCGCACAAGTCTATTA
CTGAACACAAACTAATTGGGGCGGTTCAAATGTCTCTTGGTTCTTTGCGT
CGCCAAGGAGAGCGGAAGAAAATAAGCCTTGGATTAGCTGGTGAATCCGT
TGGTGAGTTGATTGTGACTAGAGCTACCCTCGCAGATAACTCTAGTAGCT
TCGATTTCGAGGTGTGTTTCCGCTCCTAA
back to top

protein sequence of Gchil4044.t1

>Gchil4044.t1 ID=Gchil4044.t1|Name=Gchil4044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=293bp
MARGEKVQSIGNQLDIQIEASNLANMDVFSLSDPFALLEEQENGHWEEIG
RTETIWDVLNPKWVRTFVLPAETPVGLPLRVTIYDRDSKTQNLDKQEVIG
SCVCRVEDIMKEGCNGKTMELENKDLKETGSVTVIGELYDPAENDHEIFL
GRCKFRNNSFFGMFLIRPYIVIYRRRANNEWAPIFRSSPRKRGEDAAFSE
DLLHRAKLRTYKKNGGHVEDTPLRIELRSHKSITEHKLIGAVQMSLGSLR
RQGERKKISLGLAGESVGELIVTRATLADNSSSFDFEVCFRS*
back to top

mRNA from alignment at tig00004373_pilon:219811..220807-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4044.t1 ID=Gchil4044.t1|Name=Gchil4044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=997bp|location=Sequence derived from alignment at tig00004373_pilon:219811..220807- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCAGAGGAGAAAAAGTTCAATCAATTGGGAACCAGTTGGATATCCA
GATCGAGGCCTCCAATTTGGCCAACATGGATGTTTTTTCCCTGAGTGATC
CGTTTGCTCTTTTGGAGGAGCAAGAGAACGGACATTGGGAGGAGATTGGT
AAGTCAAGTTTAATCATGCTGACCAAAGATGCAACTCTAATTACGTGAGT
ACTATTTTGGAACAGGTTGTAGTGAAACTAACCACAAAGAACTACGTGCA
ACGCCGTGAAATGAAGGGCGTACTGAAACAATATGGGATGTACTGAATCC
AAAATGGGTTCGAACTTTTGTGCTCCCAGCCGAAACTCCTGTTGGTCTTC
CTCTCCGAGTGACAATTTATGATCGAGACTCGAAGACCCAAAACCTTGAC
AAGCAGGAGGTTATAGGGAGCTGCGTGTGTCGTGTGGAGGACATCATGAA
GGAGGGATGTAATGGGAAAACGATGGAACTTGAAAATAAAGACCTAAAAG
AAACTGGTTCAGTCACGGTCATAGGAGAATTGTATGATCCGGCAGAGAAT
GATCATGAGATATTCTTGGGCCGGTGCAAGTTTAGAAACAACTCCTTTTT
TGGAATGTTCTTGATAAGACCATATATCGTGATTTACAGAAGAAGAGCGA
ACAATGAGTGGGCACCAATATTTCGATCTTCTCCGAGAAAGAGGGGTGAG
GATGCCGCATTTTCAGAGGACTTATTGCATCGAGCCAAACTCAGAACTTA
TAAGAAGAATGGCGGACATGTTGAGGATACGCCACTGCGTATAGAGCTGC
GCTCGCACAAGTCTATTACTGAACACAAACTAATTGGGGCGGTTCAAATG
TCTCTTGGTTCTTTGCGTCGCCAAGGAGAGCGGAAGAAAATAAGCCTTGG
ATTAGCTGGTGAATCCGTTGGTGAGTTGATTGTGACTAGAGCTACCCTCG
CAGATAACTCTAGTAGCTTCGATTTCGAGGTGTGTTTCCGCTCCTAA
back to top

Coding sequence (CDS) from alignment at tig00004373_pilon:219811..220807-

>Gchil4044.t1 ID=Gchil4044.t1|Name=Gchil4044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=879bp|location=Sequence derived from alignment at tig00004373_pilon:219811..220807- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCAGAGGAGAAAAAGTTCAATCAATTGGGAACCAGTTGGATATCCA
GATCGAGGCCTCCAATTTGGCCAACATGGATGTTTTTTCCCTGAGTGATC
CGTTTGCTCTTTTGGAGGAGCAAGAGAACGGACATTGGGAGGAGATTGGG
CGTACTGAAACAATATGGGATGTACTGAATCCAAAATGGGTTCGAACTTT
TGTGCTCCCAGCCGAAACTCCTGTTGGTCTTCCTCTCCGAGTGACAATTT
ATGATCGAGACTCGAAGACCCAAAACCTTGACAAGCAGGAGGTTATAGGG
AGCTGCGTGTGTCGTGTGGAGGACATCATGAAGGAGGGATGTAATGGGAA
AACGATGGAACTTGAAAATAAAGACCTAAAAGAAACTGGTTCAGTCACGG
TCATAGGAGAATTGTATGATCCGGCAGAGAATGATCATGAGATATTCTTG
GGCCGGTGCAAGTTTAGAAACAACTCCTTTTTTGGAATGTTCTTGATAAG
ACCATATATCGTGATTTACAGAAGAAGAGCGAACAATGAGTGGGCACCAA
TATTTCGATCTTCTCCGAGAAAGAGGGGTGAGGATGCCGCATTTTCAGAG
GACTTATTGCATCGAGCCAAACTCAGAACTTATAAGAAGAATGGCGGACA
TGTTGAGGATACGCCACTGCGTATAGAGCTGCGCTCGCACAAGTCTATTA
CTGAACACAAACTAATTGGGGCGGTTCAAATGTCTCTTGGTTCTTTGCGT
CGCCAAGGAGAGCGGAAGAAAATAAGCCTTGGATTAGCTGGTGAATCCGT
TGGTGAGTTGATTGTGACTAGAGCTACCCTCGCAGATAACTCTAGTAGCT
TCGATTTCGAGGTGTGTTTCCGCTCCTAA
back to top