Gchil4103.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4103.t1
Unique NameGchil4103.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:750358..750876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_009080-tr
PFAMsRVT_1,SCAN,rve,zf-H2C2
Max annot lvl33154|Opisthokonta
Evalue1.85e-38
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3C637@33208|Metazoa,3DAUT@33213|Bilateria
DescriptionIntegrase core domain
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4103Gchil4103Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 750358..750876 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4103.t1.start1Gchil4103.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 750358..750360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4103.t1.CDS1Gchil4103.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 750358..750876 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4103.t1.exon1Gchil4103.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 750358..750876 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4103.t1.stop1Gchil4103.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 750874..750876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4103.t1Gchil4103.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 750358..750876 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4103.t1 ID=Gchil4103.t1|Name=Gchil4103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=173bp
MWSGRLNTIRATTHRIDLQNDARPQFQHPYRTGLKGRKIVADEMEMMRKA
QVIEPVPPNQSEWASPLFLVAKKDGSIRFFVDYRKLNVVTKRDSYPIPHM
DDCLDSLGEAVVFTTLDTNSGYWQIALAEDARALTIFTTHEGLFRFTRMP
FGLKNAPATFQRGMDIIPSRVK*
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spliced messenger RNA

>Gchil4103.t1 ID=Gchil4103.t1|Name=Gchil4103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00004373_pilon:750358..750876+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgtggtcaggtagattgaacacaatcagagccactacacaccgcattga
ccttcagaatgatgctagaccacagttccagcacccataccgtaccggcc
tgaaaggtaggaaaattgtcgccgacgagatggaaatgatgcgcaaagct
caagtcatagagccggtgcctccaaaccaatccgaatgggcaagtcccct
tttcctcgtggcgaagaaagatggctccatcaggttctttgtcgactaca
ggaagctgaacgtagtaaccaagagggactcctacccgataccccacatg
gacgactgtctggattccttaggcgaagctgtcgtatttaccacactgga
cactaactcgggatattggcaaatcgctttggccgaagacgcgagagcgc
tgacaatctttaccacccatgaaggtctgttcagatttactcgcatgccc
tttggtttgaagaatgcaccagccacgttccaacggggaatggacatcat
accgtccagagtcaaatga
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protein sequence of Gchil4103.t1

>Gchil4103.t1 ID=Gchil4103.t1|Name=Gchil4103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=173bp
MWSGRLNTIRATTHRIDLQNDARPQFQHPYRTGLKGRKIVADEMEMMRKA
QVIEPVPPNQSEWASPLFLVAKKDGSIRFFVDYRKLNVVTKRDSYPIPHM
DDCLDSLGEAVVFTTLDTNSGYWQIALAEDARALTIFTTHEGLFRFTRMP
FGLKNAPATFQRGMDIIPSRVK*
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mRNA from alignment at tig00004373_pilon:750358..750876+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4103.t1 ID=Gchil4103.t1|Name=Gchil4103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00004373_pilon:750358..750876+ (Gracilaria chilensis NLEC103_M9 male)
atgtggtcaggtagattgaacacaatcagagccactacacaccgcattga
ccttcagaatgatgctagaccacagttccagcacccataccgtaccggcc
tgaaaggtaggaaaattgtcgccgacgagatggaaatgatgcgcaaagct
caagtcatagagccggtgcctccaaaccaatccgaatgggcaagtcccct
tttcctcgtggcgaagaaagatggctccatcaggttctttgtcgactaca
ggaagctgaacgtagtaaccaagagggactcctacccgataccccacatg
gacgactgtctggattccttaggcgaagctgtcgtatttaccacactgga
cactaactcgggatattggcaaatcgctttggccgaagacgcgagagcgc
tgacaatctttaccacccatgaaggtctgttcagatttactcgcatgccc
tttggtttgaagaatgcaccagccacgttccaacggggaatggacatcat
accgtccagagtcaaatga
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Coding sequence (CDS) from alignment at tig00004373_pilon:750358..750876+

>Gchil4103.t1 ID=Gchil4103.t1|Name=Gchil4103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=519bp|location=Sequence derived from alignment at tig00004373_pilon:750358..750876+ (Gracilaria chilensis NLEC103_M9 male)
atgtggtcaggtagattgaacacaatcagagccactacacaccgcattga
ccttcagaatgatgctagaccacagttccagcacccataccgtaccggcc
tgaaaggtaggaaaattgtcgccgacgagatggaaatgatgcgcaaagct
caagtcatagagccggtgcctccaaaccaatccgaatgggcaagtcccct
tttcctcgtggcgaagaaagatggctccatcaggttctttgtcgactaca
ggaagctgaacgtagtaaccaagagggactcctacccgataccccacatg
gacgactgtctggattccttaggcgaagctgtcgtatttaccacactgga
cactaactcgggatattggcaaatcgctttggccgaagacgcgagagcgc
tgacaatctttaccacccatgaaggtctgttcagatttactcgcatgccc
tttggtttgaagaatgcaccagccacgttccaacggggaatggacatcat
accgtccagagtcaaatga
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