Gchil4375.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4375.t1
Unique NameGchil4375.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length254
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2378646..2379407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704441.1
Preferred nameCCDC101
PFAMsDUF1325
Max annot lvl2759|Eukaryota
KEGG koko:K11364
GOsGO:0000123,GO:0000124,GO:0000988,GO:0000989,GO:0001076,GO:0001134,GO:0001135,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005671,GO:0006325,GO:0006338,GO:0006342,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016458,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0031056,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031503,GO:0031974,GO:0031981,GO:0032268,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0034401,GO:0034502,GO:0034613,GO:0034629,GO:0035064,GO:0035065,GO:0036211,GO:0040029,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0043966,GO:0043970,GO:0043971,GO:0044154,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0047485,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051641,GO:0060255,GO:0061647,GO:0065007,GO:0070013,GO:0070199,GO:0070461,GO:0070727,GO:0070828,GO:0070868,GO:0071168,GO:0071169,GO:0071704,GO:0071840,GO:0072594,GO:0080090,GO:0097549,GO:0140030,GO:0140034,GO:0140110,GO:1901564,GO:1901983,GO:1902275,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905368,GO:1990234,GO:2000112,GO:2000113,GO:2000615,GO:2000756,GO:2001141
Evalue3.65e-15
EggNOG OGsKOG3038@1|root,KOG3038@2759|Eukaryota
Descriptionmethylated histone binding
COG categoryADK
BRITEko00000,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4375Gchil4375Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 2378646..2379407 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4375.t1.stop1Gchil4375.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 2378646..2378648 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4375.t1.CDS1Gchil4375.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2378646..2379407 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4375.t1.exon1Gchil4375.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2378646..2379407 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4375.t1.start1Gchil4375.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 2379405..2379407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4375.t1Gchil4375.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 2378646..2379407 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4375.t1 ID=Gchil4375.t1|Name=Gchil4375.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=254bp
MLLTEECVHVQVPSAAAERQKFIAAQEKRWLSLGWDRSRYTNELAQAATR
FLSAIAFSDHRDPIDLNLLSDDAGSGADAGSSAGSGASRASRASRGSRTS
RGARVTGKRRAEAEPPARKPPKKPKRNGKSTLISSGAKVACLDRSGDADE
HQWVLGTVSKYSSDTRKYEVIDDADGEAQIYSVPKRDLRVLPSKPQTFDS
KKRVLAVYPQTTVFYPAWLKSRKGRNWVVEFDDEDDNEENKSKEVDCRHI
IQE*
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spliced messenger RNA

>Gchil4375.t1 ID=Gchil4375.t1|Name=Gchil4375.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=762bp|location=Sequence derived from alignment at tig00004373_pilon:2378646..2379407- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCTCACAGAGGAATGCGTGCACGTCCAGGTTCCCAGTGCCGCCGC
CGAGCGCCAAAAGTTCATTGCCGCCCAAGAGAAAAGGTGGTTATCGCTGG
GCTGGGATCGCTCTCGTTACACCAACGAACTGGCACAGGCCGCTACACGC
TTCCTGTCCGCCATTGCCTTCAGCGACCACAGAGATCCCATCGATCTCAA
CCTGCTGTCCGACGACGCAGGCTCGGGCGCTGATGCGGGCTCCTCCGCCG
GCTCTGGAGCCTCGCGCGCGTCGCGCGCCTCACGGGGCTCGCGCACCTCC
CGCGGCGCGCGTGTCACCGGCAAGAGACGCGCCGAAGCTGAGCCGCCGGC
TCGCAAGCCCCCAAAGAAACCAAAGCGCAATGGAAAGTCTACGCTTATTT
CGAGCGGCGCCAAGGTGGCATGTTTGGATAGGTCTGGCGATGCCGATGAG
CACCAATGGGTGCTTGGCACTGTTAGCAAATACTCGTCTGACACGCGCAA
GTATGAAGTTATTGATGACGCCGATGGGGAGGCGCAGATTTATTCGGTGC
CTAAGCGCGACCTTCGCGTGTTGCCGTCCAAACCGCAAACATTCGATTCG
AAGAAGAGGGTGCTTGCGGTGTACCCGCAGACTACGGTGTTCTACCCCGC
GTGGCTCAAGTCGCGAAAGGGCCGAAATTGGGTGGTTGAGTTTGACGATG
AGGACGACAATGAGGAGAACAAGTCGAAGGAGGTGGATTGTCGACACATC
ATCCAGGAATGA
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protein sequence of Gchil4375.t1

>Gchil4375.t1 ID=Gchil4375.t1|Name=Gchil4375.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=254bp
MLLTEECVHVQVPSAAAERQKFIAAQEKRWLSLGWDRSRYTNELAQAATR
FLSAIAFSDHRDPIDLNLLSDDAGSGADAGSSAGSGASRASRASRGSRTS
RGARVTGKRRAEAEPPARKPPKKPKRNGKSTLISSGAKVACLDRSGDADE
HQWVLGTVSKYSSDTRKYEVIDDADGEAQIYSVPKRDLRVLPSKPQTFDS
KKRVLAVYPQTTVFYPAWLKSRKGRNWVVEFDDEDDNEENKSKEVDCRHI
IQE*
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mRNA from alignment at tig00004373_pilon:2378646..2379407-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4375.t1 ID=Gchil4375.t1|Name=Gchil4375.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=762bp|location=Sequence derived from alignment at tig00004373_pilon:2378646..2379407- (Gracilaria chilensis NLEC103_M9 male)
ATGCTGCTCACAGAGGAATGCGTGCACGTCCAGGTTCCCAGTGCCGCCGC
CGAGCGCCAAAAGTTCATTGCCGCCCAAGAGAAAAGGTGGTTATCGCTGG
GCTGGGATCGCTCTCGTTACACCAACGAACTGGCACAGGCCGCTACACGC
TTCCTGTCCGCCATTGCCTTCAGCGACCACAGAGATCCCATCGATCTCAA
CCTGCTGTCCGACGACGCAGGCTCGGGCGCTGATGCGGGCTCCTCCGCCG
GCTCTGGAGCCTCGCGCGCGTCGCGCGCCTCACGGGGCTCGCGCACCTCC
CGCGGCGCGCGTGTCACCGGCAAGAGACGCGCCGAAGCTGAGCCGCCGGC
TCGCAAGCCCCCAAAGAAACCAAAGCGCAATGGAAAGTCTACGCTTATTT
CGAGCGGCGCCAAGGTGGCATGTTTGGATAGGTCTGGCGATGCCGATGAG
CACCAATGGGTGCTTGGCACTGTTAGCAAATACTCGTCTGACACGCGCAA
GTATGAAGTTATTGATGACGCCGATGGGGAGGCGCAGATTTATTCGGTGC
CTAAGCGCGACCTTCGCGTGTTGCCGTCCAAACCGCAAACATTCGATTCG
AAGAAGAGGGTGCTTGCGGTGTACCCGCAGACTACGGTGTTCTACCCCGC
GTGGCTCAAGTCGCGAAAGGGCCGAAATTGGGTGGTTGAGTTTGACGATG
AGGACGACAATGAGGAGAACAAGTCGAAGGAGGTGGATTGTCGACACATC
ATCCAGGAATGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:2378646..2379407-

>Gchil4375.t1 ID=Gchil4375.t1|Name=Gchil4375.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=762bp|location=Sequence derived from alignment at tig00004373_pilon:2378646..2379407- (Gracilaria chilensis NLEC103_M9 male)
ATGCTGCTCACAGAGGAATGCGTGCACGTCCAGGTTCCCAGTGCCGCCGC
CGAGCGCCAAAAGTTCATTGCCGCCCAAGAGAAAAGGTGGTTATCGCTGG
GCTGGGATCGCTCTCGTTACACCAACGAACTGGCACAGGCCGCTACACGC
TTCCTGTCCGCCATTGCCTTCAGCGACCACAGAGATCCCATCGATCTCAA
CCTGCTGTCCGACGACGCAGGCTCGGGCGCTGATGCGGGCTCCTCCGCCG
GCTCTGGAGCCTCGCGCGCGTCGCGCGCCTCACGGGGCTCGCGCACCTCC
CGCGGCGCGCGTGTCACCGGCAAGAGACGCGCCGAAGCTGAGCCGCCGGC
TCGCAAGCCCCCAAAGAAACCAAAGCGCAATGGAAAGTCTACGCTTATTT
CGAGCGGCGCCAAGGTGGCATGTTTGGATAGGTCTGGCGATGCCGATGAG
CACCAATGGGTGCTTGGCACTGTTAGCAAATACTCGTCTGACACGCGCAA
GTATGAAGTTATTGATGACGCCGATGGGGAGGCGCAGATTTATTCGGTGC
CTAAGCGCGACCTTCGCGTGTTGCCGTCCAAACCGCAAACATTCGATTCG
AAGAAGAGGGTGCTTGCGGTGTACCCGCAGACTACGGTGTTCTACCCCGC
GTGGCTCAAGTCGCGAAAGGGCCGAAATTGGGTGGTTGAGTTTGACGATG
AGGACGACAATGAGGAGAACAAGTCGAAGGAGGTGGATTGTCGACACATC
ATCCAGGAATGA
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