Gchil4243.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4243.t1
Unique Name	Gchil4243.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	618

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:1651424..1653277 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMJ074CT
PFAMs	Exo_endo_phos,zf-C6H2
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12603
KEGG Pathway	ko03018,map03018
GOs	GO:0000271,GO:0000932,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005982,GO:0005984,GO:0005985,GO:0005986,GO:0006073,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009311,GO:0009312,GO:0009987,GO:0010467,GO:0016051,GO:0016070,GO:0016071,GO:0019252,GO:0032991,GO:0033692,GO:0034637,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:1990904
Evalue	4.45e-153
EggNOG OGs	COG5239@1\|root,KOG0620@2759\|Eukaryota
EC	3.1.13.4
Description	poly(A)-specific ribonuclease activity
COG category	A
BRITE	ko00000,ko00001,ko01000,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4243	Gchil4243	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 1651424..1653277 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4243.t1.start1	Gchil4243.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 1651424..1651426 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4243.t1.CDS1	Gchil4243.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 1651424..1653277 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4243.t1.exon1	Gchil4243.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 1651424..1653277 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4243.t1.stop1	Gchil4243.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 1653275..1653277 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4243.t1	Gchil4243.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 1651424..1653277 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:1651424..1653277+
coding sequence from alignment at tig00004373_pilon:1651424..1653277+

mRNA sequence

>Gchil4243.t1 ID=Gchil4243.t1|Name=Gchil4243.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=618bp
MVAAEVAPITRPKPPSTSSSMPVASTSPTASPPAPSSPESATPRIERVEL
VYTRTPVEGCDLLPYVVIRTAAGDVKSAEAIEAKTRGALSVQYRWNRCAA
TYTCARTSCFKPASQQFVPLLKLAASRTLPPDHFDALLKQSFFCSTECLC
SSWQTLRLYTENISVSFPNVEPPAPTSPDDLVASVRSHFVSNRTEPVFQH
PLLNPTNISEVAFIRNYAPTEEDVGHVLELVCRYVQRNADGTVKIGPPVS
VRSQPVRAIPPPPPERRMFNLSTGELYSAKTRRPGTFRVLSYNILSEIYA
NGQAYPHCPSWALSWTYRKRNLIREMALFEADILCLQEIQADHFEDHFQP
YFARVGYESCFKVKTREAMGRKGKIDGCATFYRKDMFVLREQHIVEYNTI
AQSRTKEARTLNRCLKGNVGLILILECLDGSGPLVVANTHLHWDPELTDV
KIFQIDAFMHELEMLIHNRRLPAHVPLIIAGDLNSEPVSSVYEFLSTGQC
SLTKPDMSEEVSETVLTTCRLSHNLHLRSAYSLTGSEPAFTNYTHNFVGV
LDYIWFGADSVLPVAILEVPDERSLFGKEAETDSEDGIPNAQWSSDHVAL
VAEFQLVKRTGLAHVAV*

spliced messenger RNA

>Gchil4243.t1 ID=Gchil4243.t1|Name=Gchil4243.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1854bp|location=Sequence derived from alignment at tig00004373_pilon:1651424..1653277+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCTGCGGAAGTCGCGCCCATAACGCGCCCAAAGCCGCCTTCCAC
GTCCTCCAGCATGCCGGTGGCTTCTACTTCGCCTACTGCGTCACCGCCCG
CCCCGTCGTCACCTGAATCAGCCACGCCCCGCATCGAACGCGTCGAGTTG
GTCTACACCCGAACCCCCGTCGAAGGGTGCGATCTTCTTCCCTACGTCGT
CATTCGTACCGCTGCTGGCGATGTCAAGAGCGCCGAGGCCATTGAGGCCA
AAACGCGCGGCGCCCTCTCCGTCCAATATCGTTGGAATCGCTGTGCTGCC
ACCTACACCTGCGCCCGCACCTCGTGTTTCAAGCCTGCCAGCCAGCAGTT
CGTCCCGTTGCTCAAGCTCGCCGCGTCCCGCACGCTTCCTCCAGATCACT
TCGATGCCCTTCTCAAGCAATCCTTCTTCTGCTCCACAGAATGCTTGTGC
TCCTCTTGGCAAACCCTTCGCCTGTACACCGAGAACATTTCTGTGTCATT
TCCCAACGTTGAGCCGCCTGCTCCCACTTCTCCGGACGATCTTGTCGCAA
GCGTGCGCTCCCATTTCGTATCCAATCGAACCGAGCCCGTGTTTCAACAC
CCGCTGTTGAACCCAACCAACATATCTGAGGTGGCGTTCATTCGCAACTA
CGCCCCTACTGAAGAAGACGTCGGCCACGTTCTCGAGCTTGTGTGCCGCT
ATGTGCAGCGAAACGCAGATGGCACCGTGAAAATAGGGCCACCGGTTTCC
GTTCGCTCCCAACCCGTGCGTGCGATCCCCCCCCCTCCACCTGAGCGCCG
AATGTTCAACCTTTCCACTGGAGAACTGTACAGCGCAAAGACCCGACGCC
CCGGAACGTTTCGCGTGCTTTCGTACAACATTCTTTCTGAGATATATGCA
AATGGTCAAGCGTATCCGCATTGTCCGTCGTGGGCCCTGTCCTGGACTTA
TCGCAAACGTAATCTTATTCGGGAGATGGCTCTTTTCGAGGCCGATATCC
TGTGCCTACAAGAAATCCAAGCGGATCACTTTGAGGATCATTTTCAACCA
TATTTCGCCAGAGTGGGCTACGAAAGCTGTTTCAAGGTCAAGACTCGGGA
AGCAATGGGCAGAAAAGGTAAGATCGATGGCTGCGCTACTTTTTATAGAA
AGGATATGTTTGTTCTGCGAGAGCAGCATATTGTTGAATACAACACCATT
GCTCAGTCAAGAACAAAGGAGGCTCGAACTCTAAACCGTTGCCTCAAAGG
CAATGTGGGACTAATATTAATATTGGAGTGCCTCGACGGTTCAGGGCCTT
TGGTGGTGGCCAACACACATCTGCACTGGGACCCAGAACTCACAGATGTC
AAAATCTTCCAGATAGACGCCTTCATGCACGAGCTTGAGATGCTGATCCA
CAATCGGCGATTGCCAGCACACGTGCCACTTATTATCGCTGGTGATTTGA
ACTCTGAGCCGGTGAGCTCAGTTTACGAGTTTCTCTCCACGGGTCAATGT
TCGTTGACAAAACCGGATATGTCAGAAGAGGTGTCTGAAACAGTGCTGAC
CACGTGCCGTCTGTCGCACAACCTTCACCTGCGATCCGCGTATTCGTTAA
CCGGATCAGAGCCAGCGTTTACCAATTACACCCACAACTTTGTGGGTGTT
CTTGATTACATTTGGTTCGGAGCCGATAGCGTCCTTCCTGTGGCAATACT
GGAAGTTCCTGACGAGAGGAGTTTGTTTGGTAAAGAGGCCGAAACTGACT
CCGAAGACGGCATTCCAAACGCACAATGGAGTTCAGACCATGTGGCGCTC
GTAGCAGAGTTTCAACTCGTAAAGCGCACTGGATTAGCTCACGTTGCTGT
GTAA

protein sequence of Gchil4243.t1

>Gchil4243.t1 ID=Gchil4243.t1|Name=Gchil4243.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=618bp
MVAAEVAPITRPKPPSTSSSMPVASTSPTASPPAPSSPESATPRIERVEL
VYTRTPVEGCDLLPYVVIRTAAGDVKSAEAIEAKTRGALSVQYRWNRCAA
TYTCARTSCFKPASQQFVPLLKLAASRTLPPDHFDALLKQSFFCSTECLC
SSWQTLRLYTENISVSFPNVEPPAPTSPDDLVASVRSHFVSNRTEPVFQH
PLLNPTNISEVAFIRNYAPTEEDVGHVLELVCRYVQRNADGTVKIGPPVS
VRSQPVRAIPPPPPERRMFNLSTGELYSAKTRRPGTFRVLSYNILSEIYA
NGQAYPHCPSWALSWTYRKRNLIREMALFEADILCLQEIQADHFEDHFQP
YFARVGYESCFKVKTREAMGRKGKIDGCATFYRKDMFVLREQHIVEYNTI
AQSRTKEARTLNRCLKGNVGLILILECLDGSGPLVVANTHLHWDPELTDV
KIFQIDAFMHELEMLIHNRRLPAHVPLIIAGDLNSEPVSSVYEFLSTGQC
SLTKPDMSEEVSETVLTTCRLSHNLHLRSAYSLTGSEPAFTNYTHNFVGV
LDYIWFGADSVLPVAILEVPDERSLFGKEAETDSEDGIPNAQWSSDHVAL
VAEFQLVKRTGLAHVAV*

mRNA from alignment at tig00004373_pilon:1651424..1653277+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4243.t1 ID=Gchil4243.t1|Name=Gchil4243.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1854bp|location=Sequence derived from alignment at tig00004373_pilon:1651424..1653277+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGCTGCGGAAGTCGCGCCCATAACGCGCCCAAAGCCGCCTTCCAC
GTCCTCCAGCATGCCGGTGGCTTCTACTTCGCCTACTGCGTCACCGCCCG
CCCCGTCGTCACCTGAATCAGCCACGCCCCGCATCGAACGCGTCGAGTTG
GTCTACACCCGAACCCCCGTCGAAGGGTGCGATCTTCTTCCCTACGTCGT
CATTCGTACCGCTGCTGGCGATGTCAAGAGCGCCGAGGCCATTGAGGCCA
AAACGCGCGGCGCCCTCTCCGTCCAATATCGTTGGAATCGCTGTGCTGCC
ACCTACACCTGCGCCCGCACCTCGTGTTTCAAGCCTGCCAGCCAGCAGTT
CGTCCCGTTGCTCAAGCTCGCCGCGTCCCGCACGCTTCCTCCAGATCACT
TCGATGCCCTTCTCAAGCAATCCTTCTTCTGCTCCACAGAATGCTTGTGC
TCCTCTTGGCAAACCCTTCGCCTGTACACCGAGAACATTTCTGTGTCATT
TCCCAACGTTGAGCCGCCTGCTCCCACTTCTCCGGACGATCTTGTCGCAA
GCGTGCGCTCCCATTTCGTATCCAATCGAACCGAGCCCGTGTTTCAACAC
CCGCTGTTGAACCCAACCAACATATCTGAGGTGGCGTTCATTCGCAACTA
CGCCCCTACTGAAGAAGACGTCGGCCACGTTCTCGAGCTTGTGTGCCGCT
ATGTGCAGCGAAACGCAGATGGCACCGTGAAAATAGGGCCACCGGTTTCC
GTTCGCTCCCAACCCGTGCGTGCGATCCCCCCCCCTCCACCTGAGCGCCG
AATGTTCAACCTTTCCACTGGAGAACTGTACAGCGCAAAGACCCGACGCC
CCGGAACGTTTCGCGTGCTTTCGTACAACATTCTTTCTGAGATATATGCA
AATGGTCAAGCGTATCCGCATTGTCCGTCGTGGGCCCTGTCCTGGACTTA
TCGCAAACGTAATCTTATTCGGGAGATGGCTCTTTTCGAGGCCGATATCC
TGTGCCTACAAGAAATCCAAGCGGATCACTTTGAGGATCATTTTCAACCA
TATTTCGCCAGAGTGGGCTACGAAAGCTGTTTCAAGGTCAAGACTCGGGA
AGCAATGGGCAGAAAAGGTAAGATCGATGGCTGCGCTACTTTTTATAGAA
AGGATATGTTTGTTCTGCGAGAGCAGCATATTGTTGAATACAACACCATT
GCTCAGTCAAGAACAAAGGAGGCTCGAACTCTAAACCGTTGCCTCAAAGG
CAATGTGGGACTAATATTAATATTGGAGTGCCTCGACGGTTCAGGGCCTT
TGGTGGTGGCCAACACACATCTGCACTGGGACCCAGAACTCACAGATGTC
AAAATCTTCCAGATAGACGCCTTCATGCACGAGCTTGAGATGCTGATCCA
CAATCGGCGATTGCCAGCACACGTGCCACTTATTATCGCTGGTGATTTGA
ACTCTGAGCCGGTGAGCTCAGTTTACGAGTTTCTCTCCACGGGTCAATGT
TCGTTGACAAAACCGGATATGTCAGAAGAGGTGTCTGAAACAGTGCTGAC
CACGTGCCGTCTGTCGCACAACCTTCACCTGCGATCCGCGTATTCGTTAA
CCGGATCAGAGCCAGCGTTTACCAATTACACCCACAACTTTGTGGGTGTT
CTTGATTACATTTGGTTCGGAGCCGATAGCGTCCTTCCTGTGGCAATACT
GGAAGTTCCTGACGAGAGGAGTTTGTTTGGTAAAGAGGCCGAAACTGACT
CCGAAGACGGCATTCCAAACGCACAATGGAGTTCAGACCATGTGGCGCTC
GTAGCAGAGTTTCAACTCGTAAAGCGCACTGGATTAGCTCACGTTGCTGT
GTAA

Coding sequence (CDS) from alignment at tig00004373_pilon:1651424..1653277+

>Gchil4243.t1 ID=Gchil4243.t1|Name=Gchil4243.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1854bp|location=Sequence derived from alignment at tig00004373_pilon:1651424..1653277+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGCTGCGGAAGTCGCGCCCATAACGCGCCCAAAGCCGCCTTCCAC
GTCCTCCAGCATGCCGGTGGCTTCTACTTCGCCTACTGCGTCACCGCCCG
CCCCGTCGTCACCTGAATCAGCCACGCCCCGCATCGAACGCGTCGAGTTG
GTCTACACCCGAACCCCCGTCGAAGGGTGCGATCTTCTTCCCTACGTCGT
CATTCGTACCGCTGCTGGCGATGTCAAGAGCGCCGAGGCCATTGAGGCCA
AAACGCGCGGCGCCCTCTCCGTCCAATATCGTTGGAATCGCTGTGCTGCC
ACCTACACCTGCGCCCGCACCTCGTGTTTCAAGCCTGCCAGCCAGCAGTT
CGTCCCGTTGCTCAAGCTCGCCGCGTCCCGCACGCTTCCTCCAGATCACT
TCGATGCCCTTCTCAAGCAATCCTTCTTCTGCTCCACAGAATGCTTGTGC
TCCTCTTGGCAAACCCTTCGCCTGTACACCGAGAACATTTCTGTGTCATT
TCCCAACGTTGAGCCGCCTGCTCCCACTTCTCCGGACGATCTTGTCGCAA
GCGTGCGCTCCCATTTCGTATCCAATCGAACCGAGCCCGTGTTTCAACAC
CCGCTGTTGAACCCAACCAACATATCTGAGGTGGCGTTCATTCGCAACTA
CGCCCCTACTGAAGAAGACGTCGGCCACGTTCTCGAGCTTGTGTGCCGCT
ATGTGCAGCGAAACGCAGATGGCACCGTGAAAATAGGGCCACCGGTTTCC
GTTCGCTCCCAACCCGTGCGTGCGATCCCCCCCCCTCCACCTGAGCGCCG
AATGTTCAACCTTTCCACTGGAGAACTGTACAGCGCAAAGACCCGACGCC
CCGGAACGTTTCGCGTGCTTTCGTACAACATTCTTTCTGAGATATATGCA
AATGGTCAAGCGTATCCGCATTGTCCGTCGTGGGCCCTGTCCTGGACTTA
TCGCAAACGTAATCTTATTCGGGAGATGGCTCTTTTCGAGGCCGATATCC
TGTGCCTACAAGAAATCCAAGCGGATCACTTTGAGGATCATTTTCAACCA
TATTTCGCCAGAGTGGGCTACGAAAGCTGTTTCAAGGTCAAGACTCGGGA
AGCAATGGGCAGAAAAGGTAAGATCGATGGCTGCGCTACTTTTTATAGAA
AGGATATGTTTGTTCTGCGAGAGCAGCATATTGTTGAATACAACACCATT
GCTCAGTCAAGAACAAAGGAGGCTCGAACTCTAAACCGTTGCCTCAAAGG
CAATGTGGGACTAATATTAATATTGGAGTGCCTCGACGGTTCAGGGCCTT
TGGTGGTGGCCAACACACATCTGCACTGGGACCCAGAACTCACAGATGTC
AAAATCTTCCAGATAGACGCCTTCATGCACGAGCTTGAGATGCTGATCCA
CAATCGGCGATTGCCAGCACACGTGCCACTTATTATCGCTGGTGATTTGA
ACTCTGAGCCGGTGAGCTCAGTTTACGAGTTTCTCTCCACGGGTCAATGT
TCGTTGACAAAACCGGATATGTCAGAAGAGGTGTCTGAAACAGTGCTGAC
CACGTGCCGTCTGTCGCACAACCTTCACCTGCGATCCGCGTATTCGTTAA
CCGGATCAGAGCCAGCGTTTACCAATTACACCCACAACTTTGTGGGTGTT
CTTGATTACATTTGGTTCGGAGCCGATAGCGTCCTTCCTGTGGCAATACT
GGAAGTTCCTGACGAGAGGAGTTTGTTTGGTAAAGAGGCCGAAACTGACT
CCGAAGACGGCATTCCAAACGCACAATGGAGTTCAGACCATGTGGCGCTC
GTAGCAGAGTTTCAACTCGTAAAGCGCACTGGATTAGCTCACGTTGCTGT
GTAA