Gchil3840.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3840.t1
Unique NameGchil3840.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length467
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:900184..901584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6334.EFV61764
PFAMsRVT_1,rve
Max annot lvl33208|Metazoa
Evalue5.43e-29
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,39V2W@33154|Opisthokonta,3BDP9@33208|Metazoa,3CVGI@33213|Bilateria
DescriptionDNA integration
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3840Gchil3840Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 900184..901584 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3840.t1.stop1Gchil3840.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 900184..900186 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3840.t1.CDS1Gchil3840.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 900184..901584 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3840.t1.exon1Gchil3840.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 900184..901584 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3840.t1.start1Gchil3840.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 901582..901584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3840.t1Gchil3840.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 900184..901584 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3840.t1 ID=Gchil3840.t1|Name=Gchil3840.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=467bp
MSVDCYATVRFCTDCARNRVKLRRHGTKLKLFPARAPLEFVAIDILRPFL
TTKRNYKFLLVITDRFSKLVRTVPLRKISALSVAQAFVLHWVFVYGPPVK
LLSDNGRPFASRFSEDVCQILDIKNRFTTTYHPQTYGQAERFNRTLLATL
CSYVADHPKDWDLFNYALTFAYNAQVHRTPGLTPLELVLSRTQPLVALEP
QPTLDTFLSPTAYREAWKTWLMKLVPAARRSMGRAQAAYKRDIDTKAPRS
PPRLAPDGYVFIRKEYWNPEKEKRHKLSPVADGPFRVIWVAPDTVVVDLA
GNHERISRDRVVPAPPPLTSQPTGVTVPVETNSSTHLPQVFPCPYAFPHP
SRGLSNLPLPAAPNPQGIASPIRRSSPVHPTDTNSSASSREGEAPDSRRN
PVDTIAGTAAPSSVILRPSGVPDTDVRQDSTQLLSKPQDAAADKATNTRR
GVTTRATRNANALDAP*
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spliced messenger RNA

>Gchil3840.t1 ID=Gchil3840.t1|Name=Gchil3840.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00000010_pilon:900184..901584- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGTGGACTGCTACGCAACGGTGCGGTTTTGTACCGATTGCGCTCG
GAACCGTGTCAAGCTCCGCCGTCATGGGACGAAGTTGAAGCTGTTCCCAG
CTCGCGCTCCATTGGAGTTTGTGGCCATCGATATACTCCGTCCCTTCCTT
ACTACTAAGCGGAATTACAAGTTCTTACTCGTAATTACGGATCGCTTCTC
CAAGCTGGTACGGACCGTACCGTTACGGAAGATCTCCGCTTTGAGCGTGG
CTCAAGCCTTCGTCCTACACTGGGTCTTTGTCTACGGTCCGCCAGTCAAA
CTCCTCTCCGATAACGGGAGACCGTTCGCCTCTCGTTTCTCCGAGGATGT
GTGTCAAATCCTGGACATTAAGAACCGGTTCACGACCACTTACCACCCCC
AAACTTATGGGCAGGCCGAACGGTTCAACCGGACATTACTTGCGACACTC
TGTTCATACGTTGCAGACCACCCCAAAGATTGGGACTTGTTCAATTATGC
GCTCACCTTTGCGTACAATGCGCAGGTGCACAGGACACCTGGATTAACGC
CCTTGGAGCTGGTACTGTCCCGTACCCAACCGCTCGTGGCGCTGGAACCA
CAGCCCACGCTGGATACCTTTCTGTCACCGACTGCTTACCGCGAAGCGTG
GAAAACTTGGCTCATGAAGCTCGTCCCCGCCGCACGGCGTTCAATGGGCC
GAGCCCAGGCCGCTTACAAGCGTGACATTGATACCAAAGCCCCTCGCTCT
CCGCCACGACTCGCCCCCGACGGTTATGTATTCATCCGCAAGGAGTATTG
GAACCCAGAGAAGGAGAAACGACACAAGCTGTCACCCGTTGCCGACGGCC
CTTTTCGGGTTATTTGGGTGGCTCCCGACACTGTCGTTGTTGACCTCGCT
GGTAATCACGAACGCATCTCCCGCGATCGCGTGGTACCGGCTCCTCCGCC
GTTAACATCCCAACCAACTGGTGTGACTGTTCCCGTTGAAACGAATTCAT
CGACCCATTTACCCCAGGTCTTCCCGTGTCCCTACGCGTTTCCACACCCA
TCTCGGGGTTTGTCTAACCTTCCGCTACCCGCGGCGCCCAACCCGCAAGG
AATCGCGTCGCCCATCCGTCGCTCCTCCCCAGTCCACCCGACGGACACCA
ACTCCAGTGCATCGTCTAGGGAGGGGGAGGCGCCCGACAGCCGTCGTAAT
CCGGTCGATACCATCGCTGGAACCGCCGCGCCGTCGAGTGTCATTCTTCG
CCCATCAGGGGTGCCTGATACCGACGTCCGGCAAGACTCGACGCAGTTGC
TATCCAAGCCTCAGGACGCAGCTGCGGATAAAGCCACCAACACTCGCCGA
GGTGTCACCACACGTGCAACAAGGAATGCAAATGCGCTCGACGCACCGTA
G
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protein sequence of Gchil3840.t1

>Gchil3840.t1 ID=Gchil3840.t1|Name=Gchil3840.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=467bp
MSVDCYATVRFCTDCARNRVKLRRHGTKLKLFPARAPLEFVAIDILRPFL
TTKRNYKFLLVITDRFSKLVRTVPLRKISALSVAQAFVLHWVFVYGPPVK
LLSDNGRPFASRFSEDVCQILDIKNRFTTTYHPQTYGQAERFNRTLLATL
CSYVADHPKDWDLFNYALTFAYNAQVHRTPGLTPLELVLSRTQPLVALEP
QPTLDTFLSPTAYREAWKTWLMKLVPAARRSMGRAQAAYKRDIDTKAPRS
PPRLAPDGYVFIRKEYWNPEKEKRHKLSPVADGPFRVIWVAPDTVVVDLA
GNHERISRDRVVPAPPPLTSQPTGVTVPVETNSSTHLPQVFPCPYAFPHP
SRGLSNLPLPAAPNPQGIASPIRRSSPVHPTDTNSSASSREGEAPDSRRN
PVDTIAGTAAPSSVILRPSGVPDTDVRQDSTQLLSKPQDAAADKATNTRR
GVTTRATRNANALDAP*
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mRNA from alignment at tig00000010_pilon:900184..901584-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3840.t1 ID=Gchil3840.t1|Name=Gchil3840.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00000010_pilon:900184..901584- (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGTGGACTGCTACGCAACGGTGCGGTTTTGTACCGATTGCGCTCG
GAACCGTGTCAAGCTCCGCCGTCATGGGACGAAGTTGAAGCTGTTCCCAG
CTCGCGCTCCATTGGAGTTTGTGGCCATCGATATACTCCGTCCCTTCCTT
ACTACTAAGCGGAATTACAAGTTCTTACTCGTAATTACGGATCGCTTCTC
CAAGCTGGTACGGACCGTACCGTTACGGAAGATCTCCGCTTTGAGCGTGG
CTCAAGCCTTCGTCCTACACTGGGTCTTTGTCTACGGTCCGCCAGTCAAA
CTCCTCTCCGATAACGGGAGACCGTTCGCCTCTCGTTTCTCCGAGGATGT
GTGTCAAATCCTGGACATTAAGAACCGGTTCACGACCACTTACCACCCCC
AAACTTATGGGCAGGCCGAACGGTTCAACCGGACATTACTTGCGACACTC
TGTTCATACGTTGCAGACCACCCCAAAGATTGGGACTTGTTCAATTATGC
GCTCACCTTTGCGTACAATGCGCAGGTGCACAGGACACCTGGATTAACGC
CCTTGGAGCTGGTACTGTCCCGTACCCAACCGCTCGTGGCGCTGGAACCA
CAGCCCACGCTGGATACCTTTCTGTCACCGACTGCTTACCGCGAAGCGTG
GAAAACTTGGCTCATGAAGCTCGTCCCCGCCGCACGGCGTTCAATGGGCC
GAGCCCAGGCCGCTTACAAGCGTGACATTGATACCAAAGCCCCTCGCTCT
CCGCCACGACTCGCCCCCGACGGTTATGTATTCATCCGCAAGGAGTATTG
GAACCCAGAGAAGGAGAAACGACACAAGCTGTCACCCGTTGCCGACGGCC
CTTTTCGGGTTATTTGGGTGGCTCCCGACACTGTCGTTGTTGACCTCGCT
GGTAATCACGAACGCATCTCCCGCGATCGCGTGGTACCGGCTCCTCCGCC
GTTAACATCCCAACCAACTGGTGTGACTGTTCCCGTTGAAACGAATTCAT
CGACCCATTTACCCCAGGTCTTCCCGTGTCCCTACGCGTTTCCACACCCA
TCTCGGGGTTTGTCTAACCTTCCGCTACCCGCGGCGCCCAACCCGCAAGG
AATCGCGTCGCCCATCCGTCGCTCCTCCCCAGTCCACCCGACGGACACCA
ACTCCAGTGCATCGTCTAGGGAGGGGGAGGCGCCCGACAGCCGTCGTAAT
CCGGTCGATACCATCGCTGGAACCGCCGCGCCGTCGAGTGTCATTCTTCG
CCCATCAGGGGTGCCTGATACCGACGTCCGGCAAGACTCGACGCAGTTGC
TATCCAAGCCTCAGGACGCAGCTGCGGATAAAGCCACCAACACTCGCCGA
GGTGTCACCACACGTGCAACAAGGAATGCAAATGCGCTCGACGCACCGTA
G
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Coding sequence (CDS) from alignment at tig00000010_pilon:900184..901584-

>Gchil3840.t1 ID=Gchil3840.t1|Name=Gchil3840.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1401bp|location=Sequence derived from alignment at tig00000010_pilon:900184..901584- (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGTGGACTGCTACGCAACGGTGCGGTTTTGTACCGATTGCGCTCG
GAACCGTGTCAAGCTCCGCCGTCATGGGACGAAGTTGAAGCTGTTCCCAG
CTCGCGCTCCATTGGAGTTTGTGGCCATCGATATACTCCGTCCCTTCCTT
ACTACTAAGCGGAATTACAAGTTCTTACTCGTAATTACGGATCGCTTCTC
CAAGCTGGTACGGACCGTACCGTTACGGAAGATCTCCGCTTTGAGCGTGG
CTCAAGCCTTCGTCCTACACTGGGTCTTTGTCTACGGTCCGCCAGTCAAA
CTCCTCTCCGATAACGGGAGACCGTTCGCCTCTCGTTTCTCCGAGGATGT
GTGTCAAATCCTGGACATTAAGAACCGGTTCACGACCACTTACCACCCCC
AAACTTATGGGCAGGCCGAACGGTTCAACCGGACATTACTTGCGACACTC
TGTTCATACGTTGCAGACCACCCCAAAGATTGGGACTTGTTCAATTATGC
GCTCACCTTTGCGTACAATGCGCAGGTGCACAGGACACCTGGATTAACGC
CCTTGGAGCTGGTACTGTCCCGTACCCAACCGCTCGTGGCGCTGGAACCA
CAGCCCACGCTGGATACCTTTCTGTCACCGACTGCTTACCGCGAAGCGTG
GAAAACTTGGCTCATGAAGCTCGTCCCCGCCGCACGGCGTTCAATGGGCC
GAGCCCAGGCCGCTTACAAGCGTGACATTGATACCAAAGCCCCTCGCTCT
CCGCCACGACTCGCCCCCGACGGTTATGTATTCATCCGCAAGGAGTATTG
GAACCCAGAGAAGGAGAAACGACACAAGCTGTCACCCGTTGCCGACGGCC
CTTTTCGGGTTATTTGGGTGGCTCCCGACACTGTCGTTGTTGACCTCGCT
GGTAATCACGAACGCATCTCCCGCGATCGCGTGGTACCGGCTCCTCCGCC
GTTAACATCCCAACCAACTGGTGTGACTGTTCCCGTTGAAACGAATTCAT
CGACCCATTTACCCCAGGTCTTCCCGTGTCCCTACGCGTTTCCACACCCA
TCTCGGGGTTTGTCTAACCTTCCGCTACCCGCGGCGCCCAACCCGCAAGG
AATCGCGTCGCCCATCCGTCGCTCCTCCCCAGTCCACCCGACGGACACCA
ACTCCAGTGCATCGTCTAGGGAGGGGGAGGCGCCCGACAGCCGTCGTAAT
CCGGTCGATACCATCGCTGGAACCGCCGCGCCGTCGAGTGTCATTCTTCG
CCCATCAGGGGTGCCTGATACCGACGTCCGGCAAGACTCGACGCAGTTGC
TATCCAAGCCTCAGGACGCAGCTGCGGATAAAGCCACCAACACTCGCCGA
GGTGTCACCACACGTGCAACAAGGAATGCAAATGCGCTCGACGCACCGTA
G
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