Gchil4154.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4154.t1
Unique NameGchil4154.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length366
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1049879..1050976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog65071.PYU1_T002225
PFAMsJAB,MitMem_reg
Max annot lvl121069|Pythiales
Evalue1.74e-58
EggNOG OGsCOG1310@1|root,KOG3050@2759|Eukaryota,1MFA2@121069|Pythiales
DescriptionCOP9 signalosome complex subunit. Source PGD
COG categoryOT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4154Gchil4154Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1049879..1050976 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4154.t1.stop1Gchil4154.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1049879..1049881 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4154.t1.CDS1Gchil4154.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1049879..1050976 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4154.t1.exon1Gchil4154.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1049879..1050976 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4154.t1.start1Gchil4154.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1050974..1050976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4154.t1Gchil4154.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1049879..1050976 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4154.t1 ID=Gchil4154.t1|Name=Gchil4154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=366bp
MIGKLHSAPQSDLDALTEGSNDEGAPIILHPLVVLNLSDHFTRFSAIRLF
PNVQTRRSTHNSNTGLIPYNEDGKEPRVLGILLGIQRGRMVEVCHSFELP
ARITPERKTEIDTEFMAKRIEQYQQIFSKYVVVGWYFIGTELSPEDLRLH
TEVFSRFNEAPILLVMNPASKLTTCIQSKGTGEDTIDSMKLIKSSGLLTT
YQTELRVMQERPTMTLAPIPHRYASEDSERIAVDHVMRHAVPGGGDGASS
TTLHLNNLKRSVNMLERRINVIVAFLEATAKGEIGLNHALLRRIGGVCAR
LPALDCAEFSAAFADEKNDSMVVAYLCGVTKSICSLNEAVDMFNRFNERI
APSSSGRRPALYPRP*
back to top

spliced messenger RNA

>Gchil4154.t1 ID=Gchil4154.t1|Name=Gchil4154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00004373_pilon:1049879..1050976- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGGAAAGTTGCATTCAGCGCCACAAAGCGACCTTGATGCCTTAAC
AGAAGGCTCAAACGACGAGGGTGCGCCCATTATTCTTCACCCCTTGGTTG
TCCTTAATTTATCGGACCACTTTACTCGATTTTCAGCCATCAGGCTGTTT
CCAAACGTACAGACAAGGAGGAGTACTCACAATTCTAACACCGGGCTGAT
ACCCTATAACGAAGATGGGAAGGAGCCACGAGTGCTAGGGATTTTGCTTG
GAATACAACGGGGGAGAATGGTTGAAGTGTGTCATTCTTTTGAACTGCCG
GCAAGAATAACTCCTGAGCGAAAAACGGAGATTGATACGGAATTTATGGC
CAAGCGAATCGAACAATATCAGCAAATCTTCTCGAAATATGTAGTGGTGG
GGTGGTATTTCATTGGTACGGAACTTTCTCCCGAAGATCTTCGTTTACAC
ACCGAAGTATTTTCTAGGTTTAACGAGGCTCCCATTTTACTTGTGATGAA
TCCTGCCTCTAAACTCACCACATGCATCCAGTCCAAGGGAACAGGGGAAG
ACACGATAGACTCCATGAAGCTAATCAAATCGTCCGGACTGTTAACAACA
TACCAAACCGAATTACGTGTTATGCAAGAAAGACCCACAATGACTTTAGC
GCCAATACCACATCGATACGCGTCAGAAGATTCTGAAAGAATCGCAGTTG
ACCATGTGATGCGGCATGCAGTTCCTGGTGGCGGGGATGGTGCTTCGAGC
ACCACGTTGCATCTCAATAATCTAAAGCGCTCCGTCAATATGCTTGAACG
TCGCATAAACGTTATAGTTGCCTTTTTAGAAGCGACTGCAAAAGGTGAGA
TAGGGCTGAATCATGCACTGCTACGGCGTATTGGAGGTGTATGCGCCCGA
CTGCCTGCTCTTGACTGCGCAGAGTTCTCGGCTGCTTTTGCCGATGAAAA
AAACGATTCTATGGTTGTTGCATATCTCTGCGGTGTGACGAAGTCAATAT
GTTCTTTGAATGAAGCCGTGGACATGTTCAATCGATTTAATGAGAGAATT
GCACCTTCAAGTAGCGGAAGAAGACCAGCTCTCTATCCCAGACCTTGA
back to top

protein sequence of Gchil4154.t1

>Gchil4154.t1 ID=Gchil4154.t1|Name=Gchil4154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=366bp
MIGKLHSAPQSDLDALTEGSNDEGAPIILHPLVVLNLSDHFTRFSAIRLF
PNVQTRRSTHNSNTGLIPYNEDGKEPRVLGILLGIQRGRMVEVCHSFELP
ARITPERKTEIDTEFMAKRIEQYQQIFSKYVVVGWYFIGTELSPEDLRLH
TEVFSRFNEAPILLVMNPASKLTTCIQSKGTGEDTIDSMKLIKSSGLLTT
YQTELRVMQERPTMTLAPIPHRYASEDSERIAVDHVMRHAVPGGGDGASS
TTLHLNNLKRSVNMLERRINVIVAFLEATAKGEIGLNHALLRRIGGVCAR
LPALDCAEFSAAFADEKNDSMVVAYLCGVTKSICSLNEAVDMFNRFNERI
APSSSGRRPALYPRP*
back to top

mRNA from alignment at tig00004373_pilon:1049879..1050976-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4154.t1 ID=Gchil4154.t1|Name=Gchil4154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00004373_pilon:1049879..1050976- (Gracilaria chilensis NLEC103_M9 male)
ATGATCGGAAAGTTGCATTCAGCGCCACAAAGCGACCTTGATGCCTTAAC
AGAAGGCTCAAACGACGAGGGTGCGCCCATTATTCTTCACCCCTTGGTTG
TCCTTAATTTATCGGACCACTTTACTCGATTTTCAGCCATCAGGCTGTTT
CCAAACGTACAGACAAGGAGGAGTACTCACAATTCTAACACCGGGCTGAT
ACCCTATAACGAAGATGGGAAGGAGCCACGAGTGCTAGGGATTTTGCTTG
GAATACAACGGGGGAGAATGGTTGAAGTGTGTCATTCTTTTGAACTGCCG
GCAAGAATAACTCCTGAGCGAAAAACGGAGATTGATACGGAATTTATGGC
CAAGCGAATCGAACAATATCAGCAAATCTTCTCGAAATATGTAGTGGTGG
GGTGGTATTTCATTGGTACGGAACTTTCTCCCGAAGATCTTCGTTTACAC
ACCGAAGTATTTTCTAGGTTTAACGAGGCTCCCATTTTACTTGTGATGAA
TCCTGCCTCTAAACTCACCACATGCATCCAGTCCAAGGGAACAGGGGAAG
ACACGATAGACTCCATGAAGCTAATCAAATCGTCCGGACTGTTAACAACA
TACCAAACCGAATTACGTGTTATGCAAGAAAGACCCACAATGACTTTAGC
GCCAATACCACATCGATACGCGTCAGAAGATTCTGAAAGAATCGCAGTTG
ACCATGTGATGCGGCATGCAGTTCCTGGTGGCGGGGATGGTGCTTCGAGC
ACCACGTTGCATCTCAATAATCTAAAGCGCTCCGTCAATATGCTTGAACG
TCGCATAAACGTTATAGTTGCCTTTTTAGAAGCGACTGCAAAAGGTGAGA
TAGGGCTGAATCATGCACTGCTACGGCGTATTGGAGGTGTATGCGCCCGA
CTGCCTGCTCTTGACTGCGCAGAGTTCTCGGCTGCTTTTGCCGATGAAAA
AAACGATTCTATGGTTGTTGCATATCTCTGCGGTGTGACGAAGTCAATAT
GTTCTTTGAATGAAGCCGTGGACATGTTCAATCGATTTAATGAGAGAATT
GCACCTTCAAGTAGCGGAAGAAGACCAGCTCTCTATCCCAGACCTTGA
back to top

Coding sequence (CDS) from alignment at tig00004373_pilon:1049879..1050976-

>Gchil4154.t1 ID=Gchil4154.t1|Name=Gchil4154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1098bp|location=Sequence derived from alignment at tig00004373_pilon:1049879..1050976- (Gracilaria chilensis NLEC103_M9 male)
ATGATCGGAAAGTTGCATTCAGCGCCACAAAGCGACCTTGATGCCTTAAC
AGAAGGCTCAAACGACGAGGGTGCGCCCATTATTCTTCACCCCTTGGTTG
TCCTTAATTTATCGGACCACTTTACTCGATTTTCAGCCATCAGGCTGTTT
CCAAACGTACAGACAAGGAGGAGTACTCACAATTCTAACACCGGGCTGAT
ACCCTATAACGAAGATGGGAAGGAGCCACGAGTGCTAGGGATTTTGCTTG
GAATACAACGGGGGAGAATGGTTGAAGTGTGTCATTCTTTTGAACTGCCG
GCAAGAATAACTCCTGAGCGAAAAACGGAGATTGATACGGAATTTATGGC
CAAGCGAATCGAACAATATCAGCAAATCTTCTCGAAATATGTAGTGGTGG
GGTGGTATTTCATTGGTACGGAACTTTCTCCCGAAGATCTTCGTTTACAC
ACCGAAGTATTTTCTAGGTTTAACGAGGCTCCCATTTTACTTGTGATGAA
TCCTGCCTCTAAACTCACCACATGCATCCAGTCCAAGGGAACAGGGGAAG
ACACGATAGACTCCATGAAGCTAATCAAATCGTCCGGACTGTTAACAACA
TACCAAACCGAATTACGTGTTATGCAAGAAAGACCCACAATGACTTTAGC
GCCAATACCACATCGATACGCGTCAGAAGATTCTGAAAGAATCGCAGTTG
ACCATGTGATGCGGCATGCAGTTCCTGGTGGCGGGGATGGTGCTTCGAGC
ACCACGTTGCATCTCAATAATCTAAAGCGCTCCGTCAATATGCTTGAACG
TCGCATAAACGTTATAGTTGCCTTTTTAGAAGCGACTGCAAAAGGTGAGA
TAGGGCTGAATCATGCACTGCTACGGCGTATTGGAGGTGTATGCGCCCGA
CTGCCTGCTCTTGACTGCGCAGAGTTCTCGGCTGCTTTTGCCGATGAAAA
AAACGATTCTATGGTTGTTGCATATCTCTGCGGTGTGACGAAGTCAATAT
GTTCTTTGAATGAAGCCGTGGACATGTTCAATCGATTTAATGAGAGAATT
GCACCTTCAAGTAGCGGAAGAAGACCAGCTCTCTATCCCAGACCTTGA
back to top