Gchil3923.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3923.t1
Unique NameGchil3923.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length335
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1403116..1404120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3923Gchil3923Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1403116..1404120 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3923.t1.stop1Gchil3923.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1403116..1403118 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3923.t1.CDS1Gchil3923.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1403116..1404120 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3923.t1.exon1Gchil3923.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1403116..1404120 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3923.t1.start1Gchil3923.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1404118..1404120 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3923.t1Gchil3923.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1403116..1404120 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3923.t1 ID=Gchil3923.t1|Name=Gchil3923.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=335bp
MGNPESGSWRTEIKDVMYSSDIRVPLQIRSHHYQQLFSMKQAVGFSGLPV
LMPSSRRMPGWRPRDVDDFLQSRCTGSSAVWQLEGQLIALNTGRVLARVV
GVQEALLEKPLRKITSSAPKSLRLSQKNDSKRSHEPLTHAGALIVRDTIF
YTDDDGLKLTQFRFRPTSVARRVSPVLGCAGRVSVGRSLDRSMVLSRSRD
ETQLFTTISTPPLRMNGMLKTGWSFIGRRVKGANGMSNPGVVEKFELVAD
RREGSWNWSGVGRCPSWYGRGQCVTYLNAKRVLPRELDNRVKLWMKEVGR
SPLRIVDADHAEKQSKLEREAQEKKKRRKVLGLF*
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spliced messenger RNA

>Gchil3923.t1 ID=Gchil3923.t1|Name=Gchil3923.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at tig00000010_pilon:1403116..1404120- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGAATCCCGAATCGGGATCATGGAGAACAGAGATCAAAGACGTCAT
GTACAGTAGTGACATCCGCGTGCCGCTGCAGATAAGGTCTCACCATTATC
AACAACTCTTCTCCATGAAACAAGCCGTCGGCTTCTCCGGCTTACCGGTG
CTTATGCCTTCCTCCCGACGCATGCCAGGCTGGCGACCTCGGGATGTGGA
CGACTTTCTCCAGTCGCGCTGCACCGGATCGAGCGCCGTATGGCAGCTGG
AGGGGCAGCTAATCGCGCTCAATACCGGGCGCGTACTGGCTCGTGTTGTC
GGCGTGCAAGAGGCCCTCTTGGAAAAGCCTTTGAGGAAGATTACTTCCTC
AGCACCGAAATCGCTGCGCCTATCCCAGAAAAACGACTCAAAGCGCTCTC
ATGAACCTTTGACACACGCGGGAGCACTGATTGTCAGAGATACTATTTTC
TACACTGACGACGATGGCTTGAAGTTGACCCAATTTCGTTTCAGGCCTAC
TAGTGTAGCTCGTCGCGTCTCTCCTGTTCTTGGGTGCGCAGGACGTGTTT
CGGTTGGAAGGTCGCTTGATAGGTCCATGGTGTTATCACGAAGTCGCGAT
GAAACCCAATTGTTCACCACCATCTCCACCCCGCCTTTGCGGATGAATGG
AATGTTGAAAACGGGCTGGTCTTTCATTGGGAGAAGGGTGAAGGGAGCGA
ATGGGATGAGCAATCCGGGTGTGGTTGAGAAGTTTGAATTGGTTGCCGAT
CGACGTGAAGGTTCGTGGAATTGGTCTGGCGTCGGTAGGTGCCCATCGTG
GTACGGGCGTGGCCAGTGTGTTACGTATCTTAATGCGAAGAGAGTACTTC
CACGGGAGCTGGATAATCGGGTCAAGCTTTGGATGAAAGAGGTTGGCAGA
TCGCCACTGCGCATCGTTGATGCTGATCACGCGGAGAAGCAGTCCAAACT
GGAACGGGAAGCTCAAGAGAAGAAGAAGCGCAGAAAAGTCCTCGGCTTGT
TCTGA
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protein sequence of Gchil3923.t1

>Gchil3923.t1 ID=Gchil3923.t1|Name=Gchil3923.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=335bp
MGNPESGSWRTEIKDVMYSSDIRVPLQIRSHHYQQLFSMKQAVGFSGLPV
LMPSSRRMPGWRPRDVDDFLQSRCTGSSAVWQLEGQLIALNTGRVLARVV
GVQEALLEKPLRKITSSAPKSLRLSQKNDSKRSHEPLTHAGALIVRDTIF
YTDDDGLKLTQFRFRPTSVARRVSPVLGCAGRVSVGRSLDRSMVLSRSRD
ETQLFTTISTPPLRMNGMLKTGWSFIGRRVKGANGMSNPGVVEKFELVAD
RREGSWNWSGVGRCPSWYGRGQCVTYLNAKRVLPRELDNRVKLWMKEVGR
SPLRIVDADHAEKQSKLEREAQEKKKRRKVLGLF*
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mRNA from alignment at tig00000010_pilon:1403116..1404120-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3923.t1 ID=Gchil3923.t1|Name=Gchil3923.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at tig00000010_pilon:1403116..1404120- (Gracilaria chilensis NLEC103_M9 male)
ATGGGGAATCCCGAATCGGGATCATGGAGAACAGAGATCAAAGACGTCAT
GTACAGTAGTGACATCCGCGTGCCGCTGCAGATAAGGTCTCACCATTATC
AACAACTCTTCTCCATGAAACAAGCCGTCGGCTTCTCCGGCTTACCGGTG
CTTATGCCTTCCTCCCGACGCATGCCAGGCTGGCGACCTCGGGATGTGGA
CGACTTTCTCCAGTCGCGCTGCACCGGATCGAGCGCCGTATGGCAGCTGG
AGGGGCAGCTAATCGCGCTCAATACCGGGCGCGTACTGGCTCGTGTTGTC
GGCGTGCAAGAGGCCCTCTTGGAAAAGCCTTTGAGGAAGATTACTTCCTC
AGCACCGAAATCGCTGCGCCTATCCCAGAAAAACGACTCAAAGCGCTCTC
ATGAACCTTTGACACACGCGGGAGCACTGATTGTCAGAGATACTATTTTC
TACACTGACGACGATGGCTTGAAGTTGACCCAATTTCGTTTCAGGCCTAC
TAGTGTAGCTCGTCGCGTCTCTCCTGTTCTTGGGTGCGCAGGACGTGTTT
CGGTTGGAAGGTCGCTTGATAGGTCCATGGTGTTATCACGAAGTCGCGAT
GAAACCCAATTGTTCACCACCATCTCCACCCCGCCTTTGCGGATGAATGG
AATGTTGAAAACGGGCTGGTCTTTCATTGGGAGAAGGGTGAAGGGAGCGA
ATGGGATGAGCAATCCGGGTGTGGTTGAGAAGTTTGAATTGGTTGCCGAT
CGACGTGAAGGTTCGTGGAATTGGTCTGGCGTCGGTAGGTGCCCATCGTG
GTACGGGCGTGGCCAGTGTGTTACGTATCTTAATGCGAAGAGAGTACTTC
CACGGGAGCTGGATAATCGGGTCAAGCTTTGGATGAAAGAGGTTGGCAGA
TCGCCACTGCGCATCGTTGATGCTGATCACGCGGAGAAGCAGTCCAAACT
GGAACGGGAAGCTCAAGAGAAGAAGAAGCGCAGAAAAGTCCTCGGCTTGT
TCTGA
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Coding sequence (CDS) from alignment at tig00000010_pilon:1403116..1404120-

>Gchil3923.t1 ID=Gchil3923.t1|Name=Gchil3923.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1005bp|location=Sequence derived from alignment at tig00000010_pilon:1403116..1404120- (Gracilaria chilensis NLEC103_M9 male)
ATGGGGAATCCCGAATCGGGATCATGGAGAACAGAGATCAAAGACGTCAT
GTACAGTAGTGACATCCGCGTGCCGCTGCAGATAAGGTCTCACCATTATC
AACAACTCTTCTCCATGAAACAAGCCGTCGGCTTCTCCGGCTTACCGGTG
CTTATGCCTTCCTCCCGACGCATGCCAGGCTGGCGACCTCGGGATGTGGA
CGACTTTCTCCAGTCGCGCTGCACCGGATCGAGCGCCGTATGGCAGCTGG
AGGGGCAGCTAATCGCGCTCAATACCGGGCGCGTACTGGCTCGTGTTGTC
GGCGTGCAAGAGGCCCTCTTGGAAAAGCCTTTGAGGAAGATTACTTCCTC
AGCACCGAAATCGCTGCGCCTATCCCAGAAAAACGACTCAAAGCGCTCTC
ATGAACCTTTGACACACGCGGGAGCACTGATTGTCAGAGATACTATTTTC
TACACTGACGACGATGGCTTGAAGTTGACCCAATTTCGTTTCAGGCCTAC
TAGTGTAGCTCGTCGCGTCTCTCCTGTTCTTGGGTGCGCAGGACGTGTTT
CGGTTGGAAGGTCGCTTGATAGGTCCATGGTGTTATCACGAAGTCGCGAT
GAAACCCAATTGTTCACCACCATCTCCACCCCGCCTTTGCGGATGAATGG
AATGTTGAAAACGGGCTGGTCTTTCATTGGGAGAAGGGTGAAGGGAGCGA
ATGGGATGAGCAATCCGGGTGTGGTTGAGAAGTTTGAATTGGTTGCCGAT
CGACGTGAAGGTTCGTGGAATTGGTCTGGCGTCGGTAGGTGCCCATCGTG
GTACGGGCGTGGCCAGTGTGTTACGTATCTTAATGCGAAGAGAGTACTTC
CACGGGAGCTGGATAATCGGGTCAAGCTTTGGATGAAAGAGGTTGGCAGA
TCGCCACTGCGCATCGTTGATGCTGATCACGCGGAGAAGCAGTCCAAACT
GGAACGGGAAGCTCAAGAGAAGAAGAAGCGCAGAAAAGTCCTCGGCTTGT
TCTGA
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