Gchil7392.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7392.t1
Unique NameGchil7392.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length141
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:841371..841857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1423807.BACO01000024_gene797
Preferred namegatC
PFAMsGlu-tRNAGln
Max annot lvl91061|Bacilli
KEGG rclassRC00010
KEGG koko:K02435
KEGG ReactionR03905,R04212
KEGG Pathwayko00970,ko01100,map00970,map01100
Evalue2.49e-19
EggNOG OGsCOG0721@1|root,COG0721@2|Bacteria,1VEK3@1239|Firmicutes,4HNNA@91061|Bacilli,3F7XB@33958|Lactobacillaceae
EC6.3.5.6,6.3.5.7
DescriptionAllows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7392Gchil7392Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 841371..841857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7392.t1Gchil7392.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 841371..841857 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7392.t1.stop1Gchil7392.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 841371..841373 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7392.t1.CDS1Gchil7392.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 841371..841452 -
Gchil7392.t1.CDS2Gchil7392.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 841517..841857 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7392.t1.exon1Gchil7392.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 841371..841452 -
Gchil7392.t1.exon2Gchil7392.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 841517..841857 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7392.t1.intron1Gchil7392.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 841453..841516 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7392.t1.start1Gchil7392.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 841855..841857 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7392.t1 ID=Gchil7392.t1|Name=Gchil7392.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=141bp
MKTDGSAFISSFVSWSRAVPSKTLQSARRGPRSRVVPVRNCSDISKAEVE
NIAKLAQLRFSDDELLKVVPEIKKIIDFFDIIRETDVEGVEPMTSAQNLQ
NVMREDVPHRFSNVDGMLAEAPCLEKDFIRVPKLSSNPSD*
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spliced messenger RNA

>Gchil7392.t1 ID=Gchil7392.t1|Name=Gchil7392.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=423bp|location=Sequence derived from alignment at tig00000007_pilon:841371..841857- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGACTGATGGCTCGGCGTTTATCTCATCTTTCGTAAGTTGGTCCAG
AGCTGTTCCATCGAAAACGCTGCAGTCCGCGCGCCGAGGGCCCCGGTCGC
GTGTTGTACCCGTGCGGAATTGCAGTGACATTTCCAAAGCGGAGGTAGAA
AACATCGCAAAGTTGGCCCAACTACGATTCTCGGACGACGAACTGCTAAA
GGTTGTTCCCGAGATCAAGAAGATTATAGATTTCTTCGACATTATCAGAG
AAACCGACGTGGAAGGAGTGGAACCGATGACCTCGGCCCAGAATCTGCAA
AATGTCATGAGAGAAGATGTCCCTCATCGTTTTTCCAACGTGGATGGTAT
GTTGGCCGAAGCTCCATGTTTGGAGAAGGATTTTATTCGGGTCCCAAAGC
TTTCGTCGAATCCATCAGATTAG
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protein sequence of Gchil7392.t1

>Gchil7392.t1 ID=Gchil7392.t1|Name=Gchil7392.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=141bp
MKTDGSAFISSFVSWSRAVPSKTLQSARRGPRSRVVPVRNCSDISKAEVE
NIAKLAQLRFSDDELLKVVPEIKKIIDFFDIIRETDVEGVEPMTSAQNLQ
NVMREDVPHRFSNVDGMLAEAPCLEKDFIRVPKLSSNPSD*
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mRNA from alignment at tig00000007_pilon:841371..841857-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7392.t1 ID=Gchil7392.t1|Name=Gchil7392.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=487bp|location=Sequence derived from alignment at tig00000007_pilon:841371..841857- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGACTGATGGCTCGGCGTTTATCTCATCTTTCGTAAGTTGGTCCAG
AGCTGTTCCATCGAAAACGCTGCAGTCCGCGCGCCGAGGGCCCCGGTCGC
GTGTTGTACCCGTGCGGAATTGCAGTGACATTTCCAAAGCGGAGGTAGAA
AACATCGCAAAGTTGGCCCAACTACGATTCTCGGACGACGAACTGCTAAA
GGTTGTTCCCGAGATCAAGAAGATTATAGATTTCTTCGACATTATCAGAG
AAACCGACGTGGAAGGAGTGGAACCGATGACCTCGGCCCAGAATCTGCAA
AATGTCATGAGAGAAGATGTCCCTCATCGTTTTTCCAACGTGTACGTATC
CTTCGACGCTTTCTTTTTCATAGACGCGCTTCTAACAGTTTACGTTCTCT
TGCAGGGATGGTATGTTGGCCGAAGCTCCATGTTTGGAGAAGGATTTTAT
TCGGGTCCCAAAGCTTTCGTCGAATCCATCAGATTAG
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Coding sequence (CDS) from alignment at tig00000007_pilon:841371..841857-

>Gchil7392.t1 ID=Gchil7392.t1|Name=Gchil7392.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=423bp|location=Sequence derived from alignment at tig00000007_pilon:841371..841857- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGACTGATGGCTCGGCGTTTATCTCATCTTTCGTAAGTTGGTCCAG
AGCTGTTCCATCGAAAACGCTGCAGTCCGCGCGCCGAGGGCCCCGGTCGC
GTGTTGTACCCGTGCGGAATTGCAGTGACATTTCCAAAGCGGAGGTAGAA
AACATCGCAAAGTTGGCCCAACTACGATTCTCGGACGACGAACTGCTAAA
GGTTGTTCCCGAGATCAAGAAGATTATAGATTTCTTCGACATTATCAGAG
AAACCGACGTGGAAGGAGTGGAACCGATGACCTCGGCCCAGAATCTGCAA
AATGTCATGAGAGAAGATGTCCCTCATCGTTTTTCCAACGTGGATGGTAT
GTTGGCCGAAGCTCCATGTTTGGAGAAGGATTTTATTCGGGTCCCAAAGC
TTTCGTCGAATCCATCAGATTAG
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