Gchil9152.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil9152.t1
Unique Name	Gchil9152.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	352

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:2084040..2085095 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7029.ACYPI010215-PA
Preferred name	MGAT4B
PFAMs	Glyco_transf_54
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K00738
KEGG Reaction	R05987
KEGG Pathway	ko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG Module	M00075
GOs	GO:0000139,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005794,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0008454,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0031090,GO:0031974,GO:0031984,GO:0034645,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0043687,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070085,GO:0071704,GO:0098588,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue	5.76e-05
EggNOG OGs	28HC5@1\|root,2QPQJ@2759\|Eukaryota,38B8P@33154\|Opisthokonta,3B9C9@33208\|Metazoa,3CRMG@33213\|Bilateria,41XYQ@6656\|Arthropoda,3SIW5@50557\|Insecta,3E7BW@33342\|Paraneoptera
EC	2.4.1.145
Description	N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region
COG category	G
CAZy	GT54
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil9152	Gchil9152	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 2084040..2085095 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9152.t1.stop1	Gchil9152.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 2084040..2084042 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9152.t1.CDS1	Gchil9152.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 2084040..2085095 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9152.t1.exon1	Gchil9152.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 2084040..2085095 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9152.t1.start1	Gchil9152.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 2085093..2085095 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9152.t1	Gchil9152.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 2084040..2085095 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:2084040..2085095-
coding sequence from alignment at tig00004370_pilon:2084040..2085095-

mRNA sequence

>Gchil9152.t1 ID=Gchil9152.t1|Name=Gchil9152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=352bp
MVSTVRRRALATSSNSDFCPSIASPSHKSFPISSRAICILSILLTASLFS
IHQIIRYNRSDPITIKLLAPNATSDDEESLSFSRIQADDYVHPNFRARGA
ACMPSVTRIKGGIPVEYVSNAVKSWRLATNQSLDVRQLTVFDMDLQPAAR
PSWLDNVFDTALTDLPSWLKLSKRERPPIPHRKVTLGDDERRVEWRSKEA
LDYADVLLRCMEENDVEYIIVVQDDVLFREQMKNVIQWCDKHLKESFVTN
AQGRPKQIRMCSASLFDLSGGEADAHELRSSNMVARVWRRDFVQSMARYL
TTNFDEAPVDWLADRRCRTQKRKTIVMEPNPVRHRGRISSFPSNLREKTI
T*

spliced messenger RNA

>Gchil9152.t1 ID=Gchil9152.t1|Name=Gchil9152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00004370_pilon:2084040..2085095- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCCACTGTTCGTCGCAGAGCTCTCGCAACATCGTCGAACTCAGA
CTTTTGTCCATCTATTGCCTCCCCTTCCCACAAATCGTTTCCCATCTCAT
CTCGAGCAATATGCATCCTCTCCATCCTACTCACGGCGTCCCTGTTCTCT
ATACATCAGATCATTCGATACAACCGATCTGATCCAATTACTATTAAATT
ACTTGCACCCAACGCAACATCCGACGATGAGGAATCCTTATCATTCTCCA
GAATCCAGGCAGATGATTATGTTCATCCAAACTTCCGCGCTCGCGGAGCG
GCATGTATGCCGAGCGTTACTCGAATAAAAGGTGGAATACCCGTTGAATA
TGTCAGCAACGCTGTCAAGTCCTGGCGACTGGCAACGAACCAAAGCTTAG
ATGTGAGACAGCTCACGGTCTTTGACATGGATCTTCAACCAGCTGCACGC
CCCTCTTGGCTGGATAACGTGTTTGACACTGCTCTTACTGACCTTCCCAG
CTGGCTCAAGCTTAGTAAGAGAGAACGTCCACCTATTCCCCATAGAAAGG
TCACCCTAGGTGATGATGAGCGGCGTGTTGAATGGAGAAGTAAAGAAGCT
CTGGATTACGCAGACGTTCTTCTGCGTTGCATGGAGGAAAACGATGTTGA
GTACATAATTGTTGTTCAGGATGATGTTCTATTTCGCGAGCAGATGAAAA
ATGTCATTCAGTGGTGCGACAAACACTTGAAAGAATCGTTTGTTACCAAT
GCACAAGGGAGACCAAAGCAAATTCGAATGTGCAGTGCATCACTGTTTGA
TCTCTCTGGTGGTGAAGCGGATGCCCATGAGCTTCGTTCGTCTAACATGG
TTGCTCGGGTGTGGAGAAGGGACTTCGTGCAAAGCATGGCGCGTTATTTG
ACAACTAATTTTGATGAGGCACCAGTTGACTGGCTTGCAGATCGTAGATG
CAGAACTCAGAAGAGAAAAACTATTGTAATGGAACCTAATCCTGTGAGAC
ATCGCGGCCGTATCTCATCTTTCCCTTCCAATTTAAGAGAAAAAACCATA
ACATGA

protein sequence of Gchil9152.t1

>Gchil9152.t1 ID=Gchil9152.t1|Name=Gchil9152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=352bp
MVSTVRRRALATSSNSDFCPSIASPSHKSFPISSRAICILSILLTASLFS
IHQIIRYNRSDPITIKLLAPNATSDDEESLSFSRIQADDYVHPNFRARGA
ACMPSVTRIKGGIPVEYVSNAVKSWRLATNQSLDVRQLTVFDMDLQPAAR
PSWLDNVFDTALTDLPSWLKLSKRERPPIPHRKVTLGDDERRVEWRSKEA
LDYADVLLRCMEENDVEYIIVVQDDVLFREQMKNVIQWCDKHLKESFVTN
AQGRPKQIRMCSASLFDLSGGEADAHELRSSNMVARVWRRDFVQSMARYL
TTNFDEAPVDWLADRRCRTQKRKTIVMEPNPVRHRGRISSFPSNLREKTI
T*

mRNA from alignment at tig00004370_pilon:2084040..2085095-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil9152.t1 ID=Gchil9152.t1|Name=Gchil9152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00004370_pilon:2084040..2085095- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTTCCACTGTTCGTCGCAGAGCTCTCGCAACATCGTCGAACTCAGA
CTTTTGTCCATCTATTGCCTCCCCTTCCCACAAATCGTTTCCCATCTCAT
CTCGAGCAATATGCATCCTCTCCATCCTACTCACGGCGTCCCTGTTCTCT
ATACATCAGATCATTCGATACAACCGATCTGATCCAATTACTATTAAATT
ACTTGCACCCAACGCAACATCCGACGATGAGGAATCCTTATCATTCTCCA
GAATCCAGGCAGATGATTATGTTCATCCAAACTTCCGCGCTCGCGGAGCG
GCATGTATGCCGAGCGTTACTCGAATAAAAGGTGGAATACCCGTTGAATA
TGTCAGCAACGCTGTCAAGTCCTGGCGACTGGCAACGAACCAAAGCTTAG
ATGTGAGACAGCTCACGGTCTTTGACATGGATCTTCAACCAGCTGCACGC
CCCTCTTGGCTGGATAACGTGTTTGACACTGCTCTTACTGACCTTCCCAG
CTGGCTCAAGCTTAGTAAGAGAGAACGTCCACCTATTCCCCATAGAAAGG
TCACCCTAGGTGATGATGAGCGGCGTGTTGAATGGAGAAGTAAAGAAGCT
CTGGATTACGCAGACGTTCTTCTGCGTTGCATGGAGGAAAACGATGTTGA
GTACATAATTGTTGTTCAGGATGATGTTCTATTTCGCGAGCAGATGAAAA
ATGTCATTCAGTGGTGCGACAAACACTTGAAAGAATCGTTTGTTACCAAT
GCACAAGGGAGACCAAAGCAAATTCGAATGTGCAGTGCATCACTGTTTGA
TCTCTCTGGTGGTGAAGCGGATGCCCATGAGCTTCGTTCGTCTAACATGG
TTGCTCGGGTGTGGAGAAGGGACTTCGTGCAAAGCATGGCGCGTTATTTG
ACAACTAATTTTGATGAGGCACCAGTTGACTGGCTTGCAGATCGTAGATG
CAGAACTCAGAAGAGAAAAACTATTGTAATGGAACCTAATCCTGTGAGAC
ATCGCGGCCGTATCTCATCTTTCCCTTCCAATTTAAGAGAAAAAACCATA
ACATGA

Coding sequence (CDS) from alignment at tig00004370_pilon:2084040..2085095-

>Gchil9152.t1 ID=Gchil9152.t1|Name=Gchil9152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1056bp|location=Sequence derived from alignment at tig00004370_pilon:2084040..2085095- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTTCCACTGTTCGTCGCAGAGCTCTCGCAACATCGTCGAACTCAGA
CTTTTGTCCATCTATTGCCTCCCCTTCCCACAAATCGTTTCCCATCTCAT
CTCGAGCAATATGCATCCTCTCCATCCTACTCACGGCGTCCCTGTTCTCT
ATACATCAGATCATTCGATACAACCGATCTGATCCAATTACTATTAAATT
ACTTGCACCCAACGCAACATCCGACGATGAGGAATCCTTATCATTCTCCA
GAATCCAGGCAGATGATTATGTTCATCCAAACTTCCGCGCTCGCGGAGCG
GCATGTATGCCGAGCGTTACTCGAATAAAAGGTGGAATACCCGTTGAATA
TGTCAGCAACGCTGTCAAGTCCTGGCGACTGGCAACGAACCAAAGCTTAG
ATGTGAGACAGCTCACGGTCTTTGACATGGATCTTCAACCAGCTGCACGC
CCCTCTTGGCTGGATAACGTGTTTGACACTGCTCTTACTGACCTTCCCAG
CTGGCTCAAGCTTAGTAAGAGAGAACGTCCACCTATTCCCCATAGAAAGG
TCACCCTAGGTGATGATGAGCGGCGTGTTGAATGGAGAAGTAAAGAAGCT
CTGGATTACGCAGACGTTCTTCTGCGTTGCATGGAGGAAAACGATGTTGA
GTACATAATTGTTGTTCAGGATGATGTTCTATTTCGCGAGCAGATGAAAA
ATGTCATTCAGTGGTGCGACAAACACTTGAAAGAATCGTTTGTTACCAAT
GCACAAGGGAGACCAAAGCAAATTCGAATGTGCAGTGCATCACTGTTTGA
TCTCTCTGGTGGTGAAGCGGATGCCCATGAGCTTCGTTCGTCTAACATGG
TTGCTCGGGTGTGGAGAAGGGACTTCGTGCAAAGCATGGCGCGTTATTTG
ACAACTAATTTTGATGAGGCACCAGTTGACTGGCTTGCAGATCGTAGATG
CAGAACTCAGAAGAGAAAAACTATTGTAATGGAACCTAATCCTGTGAGAC
ATCGCGGCCGTATCTCATCTTTCCCTTCCAATTTAAGAGAAAAAACCATA
ACATGA