Gchil7444.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7444.t1
Unique NameGchil7444.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length337
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1239928..1240938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7444Gchil7444Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 1239928..1240938 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7444.t1.start1Gchil7444.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 1239928..1239930 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7444.t1.CDS1Gchil7444.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1239928..1240938 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7444.t1.exon1Gchil7444.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1239928..1240938 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7444.t1.stop1Gchil7444.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 1240936..1240938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7444.t1Gchil7444.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 1239928..1240938 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7444.t1 ID=Gchil7444.t1|Name=Gchil7444.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=337bp
MTSRSPNPPFWRTRKALLRLPILTQLSMAAVAGALGLLLIQNIAAALVTN
TARTSSPGFDSGIRPRVRLPPRPSPLVIAAAGLPRTGSTWVYNVLRILAR
IRDPNSVAGWYADLINIWKNHKTRRYEHMKESWLTAYRSLNTSLVIKMHG
PGPFKLFSHGSPLEKGADLTVITHRDLRTEVRSWVYQNWNSSIHSGDINS
TPFKDPNQWVRVAHHILDERKSTLKSIGSGRFLDIRYEEWNNQPLEKQVA
VIKQIADELDWDYTSAELMATAIEAARLEPPANDAVLMYNPVNKLHPGHT
RVDATNPDFIKALKSGFRAIEQDTDSSLFLNLKHYT*
back to top

spliced messenger RNA

>Gchil7444.t1 ID=Gchil7444.t1|Name=Gchil7444.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00000007_pilon:1239928..1240938+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAGCCGCTCTCCTAACCCGCCGTTTTGGCGCACCCGAAAGGCACT
TTTGCGCCTGCCTATCCTCACACAACTCTCCATGGCCGCCGTGGCGGGCG
CTCTGGGATTGCTTCTCATTCAAAACATCGCCGCCGCCCTTGTAACCAAT
ACCGCCAGAACCAGCTCTCCAGGCTTCGATTCGGGAATCAGGCCGAGGGT
TCGGCTTCCACCACGTCCGTCACCTCTAGTTATTGCAGCAGCAGGCCTTC
CGCGAACTGGGTCAACATGGGTTTACAACGTGCTTCGCATCCTTGCACGC
ATTCGAGATCCGAATTCCGTCGCAGGATGGTATGCTGATCTAATCAACAT
ATGGAAGAATCACAAGACCAGAAGGTACGAGCATATGAAAGAGTCATGGT
TGACGGCATACAGATCATTGAATACAAGTCTGGTTATTAAGATGCACGGC
CCAGGCCCCTTCAAACTATTTTCACATGGATCGCCGCTGGAAAAAGGAGC
CGATCTTACAGTCATCACACATCGAGATTTGAGAACGGAAGTTCGATCAT
GGGTGTATCAAAATTGGAACTCATCAATACATTCTGGTGACATCAATTCA
ACACCATTTAAAGACCCTAATCAGTGGGTTCGAGTTGCACATCACATCTT
GGACGAACGCAAGAGCACTTTGAAATCAATCGGGAGCGGGCGCTTTCTAG
ATATCCGGTATGAAGAATGGAACAATCAACCGCTCGAGAAGCAGGTTGCC
GTTATCAAACAAATCGCGGATGAACTTGATTGGGATTATACGTCAGCGGA
GCTTATGGCGACAGCGATTGAAGCGGCAAGATTAGAACCTCCCGCCAACG
ACGCTGTGTTAATGTACAACCCCGTGAACAAGCTGCATCCGGGACATACG
AGGGTTGACGCAACAAATCCTGATTTCATTAAGGCATTGAAGAGCGGGTT
TCGAGCCATCGAACAGGATACTGACAGCAGTTTGTTTCTTAATCTCAAAC
ACTATACATGA
back to top

protein sequence of Gchil7444.t1

>Gchil7444.t1 ID=Gchil7444.t1|Name=Gchil7444.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=337bp
MTSRSPNPPFWRTRKALLRLPILTQLSMAAVAGALGLLLIQNIAAALVTN
TARTSSPGFDSGIRPRVRLPPRPSPLVIAAAGLPRTGSTWVYNVLRILAR
IRDPNSVAGWYADLINIWKNHKTRRYEHMKESWLTAYRSLNTSLVIKMHG
PGPFKLFSHGSPLEKGADLTVITHRDLRTEVRSWVYQNWNSSIHSGDINS
TPFKDPNQWVRVAHHILDERKSTLKSIGSGRFLDIRYEEWNNQPLEKQVA
VIKQIADELDWDYTSAELMATAIEAARLEPPANDAVLMYNPVNKLHPGHT
RVDATNPDFIKALKSGFRAIEQDTDSSLFLNLKHYT*
back to top

mRNA from alignment at tig00000007_pilon:1239928..1240938+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7444.t1 ID=Gchil7444.t1|Name=Gchil7444.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00000007_pilon:1239928..1240938+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAAGCCGCTCTCCTAACCCGCCGTTTTGGCGCACCCGAAAGGCACT
TTTGCGCCTGCCTATCCTCACACAACTCTCCATGGCCGCCGTGGCGGGCG
CTCTGGGATTGCTTCTCATTCAAAACATCGCCGCCGCCCTTGTAACCAAT
ACCGCCAGAACCAGCTCTCCAGGCTTCGATTCGGGAATCAGGCCGAGGGT
TCGGCTTCCACCACGTCCGTCACCTCTAGTTATTGCAGCAGCAGGCCTTC
CGCGAACTGGGTCAACATGGGTTTACAACGTGCTTCGCATCCTTGCACGC
ATTCGAGATCCGAATTCCGTCGCAGGATGGTATGCTGATCTAATCAACAT
ATGGAAGAATCACAAGACCAGAAGGTACGAGCATATGAAAGAGTCATGGT
TGACGGCATACAGATCATTGAATACAAGTCTGGTTATTAAGATGCACGGC
CCAGGCCCCTTCAAACTATTTTCACATGGATCGCCGCTGGAAAAAGGAGC
CGATCTTACAGTCATCACACATCGAGATTTGAGAACGGAAGTTCGATCAT
GGGTGTATCAAAATTGGAACTCATCAATACATTCTGGTGACATCAATTCA
ACACCATTTAAAGACCCTAATCAGTGGGTTCGAGTTGCACATCACATCTT
GGACGAACGCAAGAGCACTTTGAAATCAATCGGGAGCGGGCGCTTTCTAG
ATATCCGGTATGAAGAATGGAACAATCAACCGCTCGAGAAGCAGGTTGCC
GTTATCAAACAAATCGCGGATGAACTTGATTGGGATTATACGTCAGCGGA
GCTTATGGCGACAGCGATTGAAGCGGCAAGATTAGAACCTCCCGCCAACG
ACGCTGTGTTAATGTACAACCCCGTGAACAAGCTGCATCCGGGACATACG
AGGGTTGACGCAACAAATCCTGATTTCATTAAGGCATTGAAGAGCGGGTT
TCGAGCCATCGAACAGGATACTGACAGCAGTTTGTTTCTTAATCTCAAAC
ACTATACATGA
back to top

Coding sequence (CDS) from alignment at tig00000007_pilon:1239928..1240938+

>Gchil7444.t1 ID=Gchil7444.t1|Name=Gchil7444.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1011bp|location=Sequence derived from alignment at tig00000007_pilon:1239928..1240938+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAAGCCGCTCTCCTAACCCGCCGTTTTGGCGCACCCGAAAGGCACT
TTTGCGCCTGCCTATCCTCACACAACTCTCCATGGCCGCCGTGGCGGGCG
CTCTGGGATTGCTTCTCATTCAAAACATCGCCGCCGCCCTTGTAACCAAT
ACCGCCAGAACCAGCTCTCCAGGCTTCGATTCGGGAATCAGGCCGAGGGT
TCGGCTTCCACCACGTCCGTCACCTCTAGTTATTGCAGCAGCAGGCCTTC
CGCGAACTGGGTCAACATGGGTTTACAACGTGCTTCGCATCCTTGCACGC
ATTCGAGATCCGAATTCCGTCGCAGGATGGTATGCTGATCTAATCAACAT
ATGGAAGAATCACAAGACCAGAAGGTACGAGCATATGAAAGAGTCATGGT
TGACGGCATACAGATCATTGAATACAAGTCTGGTTATTAAGATGCACGGC
CCAGGCCCCTTCAAACTATTTTCACATGGATCGCCGCTGGAAAAAGGAGC
CGATCTTACAGTCATCACACATCGAGATTTGAGAACGGAAGTTCGATCAT
GGGTGTATCAAAATTGGAACTCATCAATACATTCTGGTGACATCAATTCA
ACACCATTTAAAGACCCTAATCAGTGGGTTCGAGTTGCACATCACATCTT
GGACGAACGCAAGAGCACTTTGAAATCAATCGGGAGCGGGCGCTTTCTAG
ATATCCGGTATGAAGAATGGAACAATCAACCGCTCGAGAAGCAGGTTGCC
GTTATCAAACAAATCGCGGATGAACTTGATTGGGATTATACGTCAGCGGA
GCTTATGGCGACAGCGATTGAAGCGGCAAGATTAGAACCTCCCGCCAACG
ACGCTGTGTTAATGTACAACCCCGTGAACAAGCTGCATCCGGGACATACG
AGGGTTGACGCAACAAATCCTGATTTCATTAAGGCATTGAAGAGCGGGTT
TCGAGCCATCGAACAGGATACTGACAGCAGTTTGTTTCTTAATCTCAAAC
ACTATACATGA
back to top