Gchil7523.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7523.t1
Unique NameGchil7523.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length351
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1707847..1708899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMH075CT
Preferred nameSLC25A38
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG koko:K15118,ko:K20295,ko:K20308
KEGG TC2.A.29
GOsGO:0002262,GO:0002376,GO:0002520,GO:0003333,GO:0003674,GO:0005215,GO:0005326,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006836,GO:0006839,GO:0006855,GO:0006865,GO:0007275,GO:0008150,GO:0008152,GO:0008324,GO:0008509,GO:0008514,GO:0009058,GO:0009059,GO:0009987,GO:0015075,GO:0015171,GO:0015175,GO:0015179,GO:0015187,GO:0015238,GO:0015318,GO:0015711,GO:0015804,GO:0015807,GO:0015816,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0018130,GO:0019438,GO:0019538,GO:0019866,GO:0020027,GO:0022857,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0033013,GO:0033014,GO:0034101,GO:0034220,GO:0034641,GO:0034645,GO:0042168,GO:0042221,GO:0042440,GO:0042493,GO:0042541,GO:0042592,GO:0043090,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046483,GO:0046942,GO:0046943,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050896,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0055085,GO:0065007,GO:0065008,GO:0071702,GO:0071704,GO:0071705,GO:0098655,GO:0098656,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902475,GO:1903825,GO:1904983,GO:1905039,GO:1990542
Evalue1.97e-71
EggNOG OGsKOG0766@1|root,KOG0766@2759|Eukaryota
Descriptionglycine import into mitochondrion
COG categoryU
BRITEko00000,ko02000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7523Gchil7523Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 1707847..1708899 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7523.t1.stop1Gchil7523.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 1707847..1707849 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7523.t1.CDS1Gchil7523.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1707847..1708899 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7523.t1.exon1Gchil7523.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1707847..1708899 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7523.t1.start1Gchil7523.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 1708897..1708899 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7523.t1Gchil7523.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 1707847..1708899 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7523.t1 ID=Gchil7523.t1|Name=Gchil7523.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=351bp
MAPIDLSPKRRTQNRTVKFLSGATSGLLSTVALQPLDVVKTRMQMSAAYN
RSIHLKAKLKVRPNAGAIETISAIVTQDGVRGLWRGVVPSVLRNAMSVGC
YMLLLDITTSQLAAPDGTLSDRSSFIAGGSARFLTVILLSPMSVVKTRME
TVEYSTRYNGTVDALTKIAKQEGRQGLYRGLLPSIMRDVPYSATYMFLYL
RSRQFIGSAVGLTDNRSVIMRKLSQTHQVNQTASNPAPRQNVDSQQVLSR
IVTFASGGFSGGLATLLTQPLDVAKTRIQLSQGRHGASSRYSGFVDAVHR
MFNEEGVYGFFRGSSPRFVKRVMGAAITWMVFEECNNFYATFITEKEKDR
*
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spliced messenger RNA

>Gchil7523.t1 ID=Gchil7523.t1|Name=Gchil7523.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00000007_pilon:1707847..1708899- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCATCGACCTCTCCCCCAAGAGGCGCACCCAGAACAGAACCGT
CAAATTTCTCAGCGGCGCCACCTCGGGCCTCCTCTCCACCGTCGCGTTGC
AGCCGCTCGATGTCGTCAAAACTCGTATGCAGATGTCCGCCGCCTACAAC
AGATCCATCCATCTCAAGGCAAAACTCAAGGTCCGCCCCAACGCCGGCGC
CATCGAGACCATCTCCGCAATCGTCACTCAGGATGGCGTGCGTGGTCTTT
GGCGAGGCGTAGTACCGTCCGTTTTGCGAAACGCAATGAGCGTTGGCTGT
TACATGCTGCTCCTGGACATCACCACGTCACAGCTCGCCGCCCCGGACGG
AACTCTGTCGGATCGCTCGTCGTTCATAGCCGGCGGCAGCGCTCGTTTCC
TGACTGTTATTTTGCTCTCTCCCATGTCCGTAGTCAAAACCCGTATGGAA
ACAGTCGAATACTCCACTAGATACAATGGTACAGTTGACGCTCTAACAAA
GATAGCCAAGCAAGAGGGTCGACAAGGCTTGTACAGAGGCCTTCTTCCGT
CAATTATGAGAGATGTACCCTACTCGGCTACCTACATGTTTTTGTATTTG
CGCTCCAGACAGTTCATCGGTTCTGCTGTTGGTCTCACAGACAATAGGTC
CGTTATCATGCGCAAACTTTCCCAGACCCACCAAGTCAACCAAACAGCCT
CCAACCCTGCTCCGCGGCAGAACGTCGATTCTCAGCAGGTGCTTTCTCGA
ATTGTCACTTTTGCAAGTGGCGGCTTCAGCGGCGGTCTGGCAACATTACT
CACACAACCACTGGATGTCGCAAAAACTCGAATCCAACTCAGCCAAGGCA
GGCATGGCGCTTCGTCGCGCTACAGCGGCTTTGTGGACGCTGTACATCGC
ATGTTCAACGAAGAGGGGGTGTACGGTTTTTTTCGCGGCTCGTCTCCTCG
CTTTGTGAAGCGCGTCATGGGAGCTGCCATTACTTGGATGGTTTTCGAAG
AATGTAACAACTTTTATGCTACTTTCATTACAGAAAAAGAAAAAGACCGG
TAA
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protein sequence of Gchil7523.t1

>Gchil7523.t1 ID=Gchil7523.t1|Name=Gchil7523.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=351bp
MAPIDLSPKRRTQNRTVKFLSGATSGLLSTVALQPLDVVKTRMQMSAAYN
RSIHLKAKLKVRPNAGAIETISAIVTQDGVRGLWRGVVPSVLRNAMSVGC
YMLLLDITTSQLAAPDGTLSDRSSFIAGGSARFLTVILLSPMSVVKTRME
TVEYSTRYNGTVDALTKIAKQEGRQGLYRGLLPSIMRDVPYSATYMFLYL
RSRQFIGSAVGLTDNRSVIMRKLSQTHQVNQTASNPAPRQNVDSQQVLSR
IVTFASGGFSGGLATLLTQPLDVAKTRIQLSQGRHGASSRYSGFVDAVHR
MFNEEGVYGFFRGSSPRFVKRVMGAAITWMVFEECNNFYATFITEKEKDR
*
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mRNA from alignment at tig00000007_pilon:1707847..1708899-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7523.t1 ID=Gchil7523.t1|Name=Gchil7523.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00000007_pilon:1707847..1708899- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCCATCGACCTCTCCCCCAAGAGGCGCACCCAGAACAGAACCGT
CAAATTTCTCAGCGGCGCCACCTCGGGCCTCCTCTCCACCGTCGCGTTGC
AGCCGCTCGATGTCGTCAAAACTCGTATGCAGATGTCCGCCGCCTACAAC
AGATCCATCCATCTCAAGGCAAAACTCAAGGTCCGCCCCAACGCCGGCGC
CATCGAGACCATCTCCGCAATCGTCACTCAGGATGGCGTGCGTGGTCTTT
GGCGAGGCGTAGTACCGTCCGTTTTGCGAAACGCAATGAGCGTTGGCTGT
TACATGCTGCTCCTGGACATCACCACGTCACAGCTCGCCGCCCCGGACGG
AACTCTGTCGGATCGCTCGTCGTTCATAGCCGGCGGCAGCGCTCGTTTCC
TGACTGTTATTTTGCTCTCTCCCATGTCCGTAGTCAAAACCCGTATGGAA
ACAGTCGAATACTCCACTAGATACAATGGTACAGTTGACGCTCTAACAAA
GATAGCCAAGCAAGAGGGTCGACAAGGCTTGTACAGAGGCCTTCTTCCGT
CAATTATGAGAGATGTACCCTACTCGGCTACCTACATGTTTTTGTATTTG
CGCTCCAGACAGTTCATCGGTTCTGCTGTTGGTCTCACAGACAATAGGTC
CGTTATCATGCGCAAACTTTCCCAGACCCACCAAGTCAACCAAACAGCCT
CCAACCCTGCTCCGCGGCAGAACGTCGATTCTCAGCAGGTGCTTTCTCGA
ATTGTCACTTTTGCAAGTGGCGGCTTCAGCGGCGGTCTGGCAACATTACT
CACACAACCACTGGATGTCGCAAAAACTCGAATCCAACTCAGCCAAGGCA
GGCATGGCGCTTCGTCGCGCTACAGCGGCTTTGTGGACGCTGTACATCGC
ATGTTCAACGAAGAGGGGGTGTACGGTTTTTTTCGCGGCTCGTCTCCTCG
CTTTGTGAAGCGCGTCATGGGAGCTGCCATTACTTGGATGGTTTTCGAAG
AATGTAACAACTTTTATGCTACTTTCATTACAGAAAAAGAAAAAGACCGG
TAA
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Coding sequence (CDS) from alignment at tig00000007_pilon:1707847..1708899-

>Gchil7523.t1 ID=Gchil7523.t1|Name=Gchil7523.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1053bp|location=Sequence derived from alignment at tig00000007_pilon:1707847..1708899- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCCATCGACCTCTCCCCCAAGAGGCGCACCCAGAACAGAACCGT
CAAATTTCTCAGCGGCGCCACCTCGGGCCTCCTCTCCACCGTCGCGTTGC
AGCCGCTCGATGTCGTCAAAACTCGTATGCAGATGTCCGCCGCCTACAAC
AGATCCATCCATCTCAAGGCAAAACTCAAGGTCCGCCCCAACGCCGGCGC
CATCGAGACCATCTCCGCAATCGTCACTCAGGATGGCGTGCGTGGTCTTT
GGCGAGGCGTAGTACCGTCCGTTTTGCGAAACGCAATGAGCGTTGGCTGT
TACATGCTGCTCCTGGACATCACCACGTCACAGCTCGCCGCCCCGGACGG
AACTCTGTCGGATCGCTCGTCGTTCATAGCCGGCGGCAGCGCTCGTTTCC
TGACTGTTATTTTGCTCTCTCCCATGTCCGTAGTCAAAACCCGTATGGAA
ACAGTCGAATACTCCACTAGATACAATGGTACAGTTGACGCTCTAACAAA
GATAGCCAAGCAAGAGGGTCGACAAGGCTTGTACAGAGGCCTTCTTCCGT
CAATTATGAGAGATGTACCCTACTCGGCTACCTACATGTTTTTGTATTTG
CGCTCCAGACAGTTCATCGGTTCTGCTGTTGGTCTCACAGACAATAGGTC
CGTTATCATGCGCAAACTTTCCCAGACCCACCAAGTCAACCAAACAGCCT
CCAACCCTGCTCCGCGGCAGAACGTCGATTCTCAGCAGGTGCTTTCTCGA
ATTGTCACTTTTGCAAGTGGCGGCTTCAGCGGCGGTCTGGCAACATTACT
CACACAACCACTGGATGTCGCAAAAACTCGAATCCAACTCAGCCAAGGCA
GGCATGGCGCTTCGTCGCGCTACAGCGGCTTTGTGGACGCTGTACATCGC
ATGTTCAACGAAGAGGGGGTGTACGGTTTTTTTCGCGGCTCGTCTCCTCG
CTTTGTGAAGCGCGTCATGGGAGCTGCCATTACTTGGATGGTTTTCGAAG
AATGTAACAACTTTTATGCTACTTTCATTACAGAAAAAGAAAAAGACCGG
TAA
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