Gchil9214.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9214.t1
Unique NameGchil9214.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length391
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:2616665..2617837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9214Gchil9214Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 2616665..2617837 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9214.t1.stop1Gchil9214.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 2616665..2616667 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9214.t1.CDS1Gchil9214.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 2616665..2617837 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9214.t1.exon1Gchil9214.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 2616665..2617837 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9214.t1.start1Gchil9214.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 2617835..2617837 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9214.t1Gchil9214.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 2616665..2617837 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9214.t1 ID=Gchil9214.t1|Name=Gchil9214.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=391bp
MLVFVGCTHGISSRLPDDNPLVQTALQMASVNKAMIGVNTAPQVSERSVT
DVEHLQKQFFDLGASLTNDLGIKMNTKCHWLMRHLQHHRYNFGCLPKGST
APNESKHKSTKKAYRSSNKHRDEIAPQILSTRFSLPSDIEEHELERLGSS
ALGVRLVRKAPSSFRNNSIFAVAERMGDVQENMTLSNLINDRVKGCSSLE
EATNTASCTPHVSNGRNYFLRQRYVVSVAVKYLWWQDHESPYAQHVIRAG
DHVRRRWCHDAVKYMVQGVEGVGLVEAIFHVPQKRNLKVALFGRMTATRP
EEGNQNVVIVHGNRRYKYLIGRNEDVLVEYVPVGSITRRAYLVLDPFDLR
KRHGAAVRYKDVPDTKAERRVPNFFEVDAACFTSLAAATC*
back to top

spliced messenger RNA

>Gchil9214.t1 ID=Gchil9214.t1|Name=Gchil9214.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00004370_pilon:2616665..2617837- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGTTTTTGTGGGTTGCACTCATGGCATATCAAGTCGGCTTCCCGA
TGATAACCCACTGGTGCAAACTGCTTTGCAAATGGCTTCAGTAAACAAAG
CAATGATAGGAGTGAACACTGCTCCACAGGTGTCGGAGAGAAGTGTTACT
GATGTAGAACATCTCCAGAAACAATTTTTTGACCTTGGCGCATCTCTGAC
AAATGATCTAGGCATAAAGATGAATACCAAATGCCACTGGCTGATGAGGC
ACTTGCAACACCATCGCTACAATTTTGGCTGCCTTCCAAAGGGGTCGACG
GCTCCAAACGAGTCAAAGCACAAGTCGACTAAAAAAGCGTATCGATCGTC
AAACAAACACCGTGACGAAATTGCCCCTCAAATACTCTCCACACGCTTTT
CTCTCCCGTCTGATATTGAAGAACACGAATTAGAAAGATTAGGGAGTAGC
GCTTTGGGTGTACGCCTTGTAAGAAAAGCACCAAGTTCTTTCAGGAACAA
CTCCATATTCGCAGTGGCGGAAAGAATGGGCGACGTTCAGGAAAACATGA
CCCTGTCCAACTTGATCAACGATAGAGTTAAAGGCTGTTCATCGCTTGAA
GAGGCAACCAATACTGCATCATGTACACCGCACGTAAGTAATGGACGTAA
TTACTTTCTTCGCCAAAGATATGTAGTTTCTGTCGCAGTTAAGTACTTAT
GGTGGCAAGATCATGAATCCCCTTATGCTCAGCACGTCATCAGAGCTGGA
GATCATGTACGCAGACGCTGGTGCCATGATGCAGTCAAGTACATGGTGCA
AGGCGTTGAAGGAGTTGGTTTGGTAGAAGCCATTTTTCATGTACCGCAAA
AACGAAATCTGAAAGTCGCCCTTTTTGGTAGAATGACTGCAACGCGCCCA
GAAGAAGGCAATCAAAATGTTGTAATAGTCCATGGCAACCGTAGATATAA
GTATCTTATTGGCAGGAATGAAGACGTTCTTGTTGAGTACGTTCCTGTTG
GTTCAATCACAAGACGAGCGTATCTCGTGCTGGACCCATTCGATCTCCGT
AAGAGGCATGGAGCTGCAGTGCGATATAAAGATGTGCCCGATACAAAAGC
TGAGCGGCGTGTGCCCAATTTCTTCGAGGTGGATGCCGCTTGCTTCACAT
CTCTGGCTGCAGCTACTTGTTAA
back to top

protein sequence of Gchil9214.t1

>Gchil9214.t1 ID=Gchil9214.t1|Name=Gchil9214.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=391bp
MLVFVGCTHGISSRLPDDNPLVQTALQMASVNKAMIGVNTAPQVSERSVT
DVEHLQKQFFDLGASLTNDLGIKMNTKCHWLMRHLQHHRYNFGCLPKGST
APNESKHKSTKKAYRSSNKHRDEIAPQILSTRFSLPSDIEEHELERLGSS
ALGVRLVRKAPSSFRNNSIFAVAERMGDVQENMTLSNLINDRVKGCSSLE
EATNTASCTPHVSNGRNYFLRQRYVVSVAVKYLWWQDHESPYAQHVIRAG
DHVRRRWCHDAVKYMVQGVEGVGLVEAIFHVPQKRNLKVALFGRMTATRP
EEGNQNVVIVHGNRRYKYLIGRNEDVLVEYVPVGSITRRAYLVLDPFDLR
KRHGAAVRYKDVPDTKAERRVPNFFEVDAACFTSLAAATC*
back to top

mRNA from alignment at tig00004370_pilon:2616665..2617837-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9214.t1 ID=Gchil9214.t1|Name=Gchil9214.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00004370_pilon:2616665..2617837- (Gracilaria chilensis NLEC103_M9 male)
ATGCTCGTTTTTGTGGGTTGCACTCATGGCATATCAAGTCGGCTTCCCGA
TGATAACCCACTGGTGCAAACTGCTTTGCAAATGGCTTCAGTAAACAAAG
CAATGATAGGAGTGAACACTGCTCCACAGGTGTCGGAGAGAAGTGTTACT
GATGTAGAACATCTCCAGAAACAATTTTTTGACCTTGGCGCATCTCTGAC
AAATGATCTAGGCATAAAGATGAATACCAAATGCCACTGGCTGATGAGGC
ACTTGCAACACCATCGCTACAATTTTGGCTGCCTTCCAAAGGGGTCGACG
GCTCCAAACGAGTCAAAGCACAAGTCGACTAAAAAAGCGTATCGATCGTC
AAACAAACACCGTGACGAAATTGCCCCTCAAATACTCTCCACACGCTTTT
CTCTCCCGTCTGATATTGAAGAACACGAATTAGAAAGATTAGGGAGTAGC
GCTTTGGGTGTACGCCTTGTAAGAAAAGCACCAAGTTCTTTCAGGAACAA
CTCCATATTCGCAGTGGCGGAAAGAATGGGCGACGTTCAGGAAAACATGA
CCCTGTCCAACTTGATCAACGATAGAGTTAAAGGCTGTTCATCGCTTGAA
GAGGCAACCAATACTGCATCATGTACACCGCACGTAAGTAATGGACGTAA
TTACTTTCTTCGCCAAAGATATGTAGTTTCTGTCGCAGTTAAGTACTTAT
GGTGGCAAGATCATGAATCCCCTTATGCTCAGCACGTCATCAGAGCTGGA
GATCATGTACGCAGACGCTGGTGCCATGATGCAGTCAAGTACATGGTGCA
AGGCGTTGAAGGAGTTGGTTTGGTAGAAGCCATTTTTCATGTACCGCAAA
AACGAAATCTGAAAGTCGCCCTTTTTGGTAGAATGACTGCAACGCGCCCA
GAAGAAGGCAATCAAAATGTTGTAATAGTCCATGGCAACCGTAGATATAA
GTATCTTATTGGCAGGAATGAAGACGTTCTTGTTGAGTACGTTCCTGTTG
GTTCAATCACAAGACGAGCGTATCTCGTGCTGGACCCATTCGATCTCCGT
AAGAGGCATGGAGCTGCAGTGCGATATAAAGATGTGCCCGATACAAAAGC
TGAGCGGCGTGTGCCCAATTTCTTCGAGGTGGATGCCGCTTGCTTCACAT
CTCTGGCTGCAGCTACTTGTTAA
back to top

Coding sequence (CDS) from alignment at tig00004370_pilon:2616665..2617837-

>Gchil9214.t1 ID=Gchil9214.t1|Name=Gchil9214.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1173bp|location=Sequence derived from alignment at tig00004370_pilon:2616665..2617837- (Gracilaria chilensis NLEC103_M9 male)
ATGCTCGTTTTTGTGGGTTGCACTCATGGCATATCAAGTCGGCTTCCCGA
TGATAACCCACTGGTGCAAACTGCTTTGCAAATGGCTTCAGTAAACAAAG
CAATGATAGGAGTGAACACTGCTCCACAGGTGTCGGAGAGAAGTGTTACT
GATGTAGAACATCTCCAGAAACAATTTTTTGACCTTGGCGCATCTCTGAC
AAATGATCTAGGCATAAAGATGAATACCAAATGCCACTGGCTGATGAGGC
ACTTGCAACACCATCGCTACAATTTTGGCTGCCTTCCAAAGGGGTCGACG
GCTCCAAACGAGTCAAAGCACAAGTCGACTAAAAAAGCGTATCGATCGTC
AAACAAACACCGTGACGAAATTGCCCCTCAAATACTCTCCACACGCTTTT
CTCTCCCGTCTGATATTGAAGAACACGAATTAGAAAGATTAGGGAGTAGC
GCTTTGGGTGTACGCCTTGTAAGAAAAGCACCAAGTTCTTTCAGGAACAA
CTCCATATTCGCAGTGGCGGAAAGAATGGGCGACGTTCAGGAAAACATGA
CCCTGTCCAACTTGATCAACGATAGAGTTAAAGGCTGTTCATCGCTTGAA
GAGGCAACCAATACTGCATCATGTACACCGCACGTAAGTAATGGACGTAA
TTACTTTCTTCGCCAAAGATATGTAGTTTCTGTCGCAGTTAAGTACTTAT
GGTGGCAAGATCATGAATCCCCTTATGCTCAGCACGTCATCAGAGCTGGA
GATCATGTACGCAGACGCTGGTGCCATGATGCAGTCAAGTACATGGTGCA
AGGCGTTGAAGGAGTTGGTTTGGTAGAAGCCATTTTTCATGTACCGCAAA
AACGAAATCTGAAAGTCGCCCTTTTTGGTAGAATGACTGCAACGCGCCCA
GAAGAAGGCAATCAAAATGTTGTAATAGTCCATGGCAACCGTAGATATAA
GTATCTTATTGGCAGGAATGAAGACGTTCTTGTTGAGTACGTTCCTGTTG
GTTCAATCACAAGACGAGCGTATCTCGTGCTGGACCCATTCGATCTCCGT
AAGAGGCATGGAGCTGCAGTGCGATATAAAGATGTGCCCGATACAAAAGC
TGAGCGGCGTGTGCCCAATTTCTTCGAGGTGGATGCCGCTTGCTTCACAT
CTCTGGCTGCAGCTACTTGTTAA
back to top