Gchil9072.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9072.t1
Unique NameGchil9072.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length193
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1345527..1346105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9072Gchil9072Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1345527..1346105 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9072.t1.stop1Gchil9072.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1345527..1345529 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9072.t1.CDS1Gchil9072.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1345527..1346105 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9072.t1.exon1Gchil9072.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1345527..1346105 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9072.t1.start1Gchil9072.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1346103..1346105 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9072.t1Gchil9072.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1345527..1346105 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9072.t1 ID=Gchil9072.t1|Name=Gchil9072.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=193bp
MCAKSSGVSVKDLIAMAIGLFNGLEISKAQEDCEKTFRFFSAWEVLLHHE
KFSAALKPSISRTESDKEAVNFDNSGTNTEPILHIERPIGRSRAKDALEK
KKNSEEQLRLAAKASATQMERNKTLKRHYEIMLFTNASAGCDESETVEYF
SFMRAWAFFNLRGEKKHKKKNSHSSKESKESVRDGDDDSSEN*
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spliced messenger RNA

>Gchil9072.t1 ID=Gchil9072.t1|Name=Gchil9072.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=579bp|location=Sequence derived from alignment at tig00004370_pilon:1345527..1346105- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGCCAAGTCCAGTGGAGTCTCTGTAAAGGATCTAATTGCTATGGC
AATAGGTCTCTTCAATGGTTTAGAAATATCGAAAGCTCAAGAAGACTGCG
AAAAAACGTTCCGCTTCTTTTCGGCCTGGGAAGTTCTTCTTCATCACGAA
AAGTTCTCGGCTGCCTTGAAACCATCAATTTCACGAACAGAAAGTGACAA
AGAGGCAGTGAACTTCGACAACTCGGGCACTAATACAGAGCCTATTCTAC
ATATAGAACGTCCCATTGGACGTAGTCGCGCGAAGGACGCATTGGAAAAG
AAGAAAAACTCGGAGGAGCAGCTTCGATTGGCTGCGAAGGCTTCAGCTAC
GCAGATGGAACGTAATAAGACACTAAAACGTCACTATGAGATCATGCTGT
TTACAAACGCCTCTGCAGGGTGCGATGAATCAGAGACAGTGGAATACTTT
AGTTTCATGCGTGCATGGGCCTTTTTTAATCTACGTGGTGAAAAGAAGCA
CAAGAAGAAAAACTCCCACTCCTCGAAAGAGTCGAAAGAAAGCGTGCGCG
ATGGCGATGATGATAGCAGTGAAAATTGA
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protein sequence of Gchil9072.t1

>Gchil9072.t1 ID=Gchil9072.t1|Name=Gchil9072.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=193bp
MCAKSSGVSVKDLIAMAIGLFNGLEISKAQEDCEKTFRFFSAWEVLLHHE
KFSAALKPSISRTESDKEAVNFDNSGTNTEPILHIERPIGRSRAKDALEK
KKNSEEQLRLAAKASATQMERNKTLKRHYEIMLFTNASAGCDESETVEYF
SFMRAWAFFNLRGEKKHKKKNSHSSKESKESVRDGDDDSSEN*
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mRNA from alignment at tig00004370_pilon:1345527..1346105-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9072.t1 ID=Gchil9072.t1|Name=Gchil9072.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=579bp|location=Sequence derived from alignment at tig00004370_pilon:1345527..1346105- (Gracilaria chilensis NLEC103_M9 male)
ATGTGCGCCAAGTCCAGTGGAGTCTCTGTAAAGGATCTAATTGCTATGGC
AATAGGTCTCTTCAATGGTTTAGAAATATCGAAAGCTCAAGAAGACTGCG
AAAAAACGTTCCGCTTCTTTTCGGCCTGGGAAGTTCTTCTTCATCACGAA
AAGTTCTCGGCTGCCTTGAAACCATCAATTTCACGAACAGAAAGTGACAA
AGAGGCAGTGAACTTCGACAACTCGGGCACTAATACAGAGCCTATTCTAC
ATATAGAACGTCCCATTGGACGTAGTCGCGCGAAGGACGCATTGGAAAAG
AAGAAAAACTCGGAGGAGCAGCTTCGATTGGCTGCGAAGGCTTCAGCTAC
GCAGATGGAACGTAATAAGACACTAAAACGTCACTATGAGATCATGCTGT
TTACAAACGCCTCTGCAGGGTGCGATGAATCAGAGACAGTGGAATACTTT
AGTTTCATGCGTGCATGGGCCTTTTTTAATCTACGTGGTGAAAAGAAGCA
CAAGAAGAAAAACTCCCACTCCTCGAAAGAGTCGAAAGAAAGCGTGCGCG
ATGGCGATGATGATAGCAGTGAAAATTGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:1345527..1346105-

>Gchil9072.t1 ID=Gchil9072.t1|Name=Gchil9072.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=579bp|location=Sequence derived from alignment at tig00004370_pilon:1345527..1346105- (Gracilaria chilensis NLEC103_M9 male)
ATGTGCGCCAAGTCCAGTGGAGTCTCTGTAAAGGATCTAATTGCTATGGC
AATAGGTCTCTTCAATGGTTTAGAAATATCGAAAGCTCAAGAAGACTGCG
AAAAAACGTTCCGCTTCTTTTCGGCCTGGGAAGTTCTTCTTCATCACGAA
AAGTTCTCGGCTGCCTTGAAACCATCAATTTCACGAACAGAAAGTGACAA
AGAGGCAGTGAACTTCGACAACTCGGGCACTAATACAGAGCCTATTCTAC
ATATAGAACGTCCCATTGGACGTAGTCGCGCGAAGGACGCATTGGAAAAG
AAGAAAAACTCGGAGGAGCAGCTTCGATTGGCTGCGAAGGCTTCAGCTAC
GCAGATGGAACGTAATAAGACACTAAAACGTCACTATGAGATCATGCTGT
TTACAAACGCCTCTGCAGGGTGCGATGAATCAGAGACAGTGGAATACTTT
AGTTTCATGCGTGCATGGGCCTTTTTTAATCTACGTGGTGAAAAGAAGCA
CAAGAAGAAAAACTCCCACTCCTCGAAAGAGTCGAAAGAAAGCGTGCGCG
ATGGCGATGATGATAGCAGTGAAAATTGA
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