Gchil9058.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9058.t1
Unique NameGchil9058.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length286
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1255009..1255866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog946362.XP_004989031.1
Preferred nameYHM2
PFAMsMito_carr
Max annot lvl33154|Opisthokonta
GOsGO:0000002,GO:0003674,GO:0003676,GO:0003677,GO:0005215,GO:0005342,GO:0005371,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006839,GO:0006842,GO:0006843,GO:0006855,GO:0006996,GO:0007005,GO:0008150,GO:0008509,GO:0008514,GO:0009295,GO:0009987,GO:0015075,GO:0015142,GO:0015291,GO:0015318,GO:0015711,GO:0015742,GO:0015746,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0016043,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0034220,GO:0035674,GO:0042221,GO:0042493,GO:0042645,GO:0042891,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051181,GO:0051234,GO:0055085,GO:0070013,GO:0071702,GO:0071840,GO:0097159,GO:0098656,GO:1901363,GO:1903825,GO:1905039,GO:1990542,GO:1990546
Evalue4.02e-109
EggNOG OGsKOG0756@1|root,KOG0756@2759|Eukaryota,38DTJ@33154|Opisthokonta
DescriptionBelongs to the mitochondrial carrier (TC 2.A.29) family
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9058Gchil9058Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1255009..1255866 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9058.t1.start1Gchil9058.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1255009..1255011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9058.t1.CDS1Gchil9058.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1255009..1255866 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9058.t1.exon1Gchil9058.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1255009..1255866 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9058.t1.stop1Gchil9058.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1255864..1255866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9058.t1Gchil9058.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1255009..1255866 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9058.t1 ID=Gchil9058.t1|Name=Gchil9058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=286bp
MAPSGKKSAKDVRNGALLQMAEAATLGLPLEVWKTRMGRFRTESTIEAFK
NVYSSAGGGMNGVGAFWRGFSPKMVESATKGAVLMVAKETLRDAGTNAGL
PPFAAAVLSGAGGGVCQVVVMGPCTYLVTAAVTGGGSTSGVELAKQTYTK
SGIRGFYPGGSAIAFRQATNWASRQGLTEWVRIRMRKWKYGDDTAKLTKG
EEGLCGVIGGTMSSWNHPFEVARIEMQARANAGQSSLGLGQVLRMVVKEQ
GPLGLFQGVIPRIGLNIWQTLFMVSLVHVIGDIKK*
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spliced messenger RNA

>Gchil9058.t1 ID=Gchil9058.t1|Name=Gchil9058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00004370_pilon:1255009..1255866+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACCAAGTGGGAAGAAGTCTGCCAAAGATGTTCGCAACGGGGCTCT
GCTGCAGATGGCGGAAGCCGCTACATTAGGACTCCCGTTGGAGGTATGGA
AAACGCGTATGGGGCGCTTTCGAACCGAATCAACAATCGAGGCATTCAAG
AATGTATACTCATCTGCCGGCGGAGGGATGAATGGGGTGGGCGCATTTTG
GCGTGGATTCAGTCCTAAGATGGTTGAAAGCGCAACGAAAGGGGCCGTGC
TGATGGTGGCGAAGGAGACTCTGAGAGATGCCGGAACGAATGCTGGCCTG
CCTCCGTTCGCTGCCGCTGTGCTTAGTGGAGCTGGTGGAGGCGTCTGCCA
AGTGGTTGTAATGGGCCCCTGCACATATCTTGTTACAGCGGCCGTTACGG
GGGGTGGATCAACATCAGGCGTGGAATTGGCGAAGCAGACGTATACCAAG
AGTGGAATTCGCGGGTTCTATCCTGGTGGGAGCGCGATCGCCTTTCGTCA
GGCCACGAACTGGGCGTCTCGACAGGGTTTGACGGAATGGGTGCGAATTC
GCATGCGTAAATGGAAGTACGGGGATGATACCGCGAAGTTGACAAAAGGC
GAAGAAGGACTGTGTGGGGTGATTGGGGGAACAATGTCAAGCTGGAACCA
TCCCTTCGAAGTCGCCCGCATTGAGATGCAGGCTAGGGCGAATGCTGGGC
AATCATCATTGGGACTGGGTCAGGTTTTGAGAATGGTGGTGAAGGAGCAG
GGCCCACTAGGTCTGTTCCAAGGAGTAATCCCTCGCATTGGACTGAATAT
ATGGCAGACGCTGTTTATGGTGAGTCTAGTTCATGTAATAGGAGACATTA
AGAAGTAA
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protein sequence of Gchil9058.t1

>Gchil9058.t1 ID=Gchil9058.t1|Name=Gchil9058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=286bp
MAPSGKKSAKDVRNGALLQMAEAATLGLPLEVWKTRMGRFRTESTIEAFK
NVYSSAGGGMNGVGAFWRGFSPKMVESATKGAVLMVAKETLRDAGTNAGL
PPFAAAVLSGAGGGVCQVVVMGPCTYLVTAAVTGGGSTSGVELAKQTYTK
SGIRGFYPGGSAIAFRQATNWASRQGLTEWVRIRMRKWKYGDDTAKLTKG
EEGLCGVIGGTMSSWNHPFEVARIEMQARANAGQSSLGLGQVLRMVVKEQ
GPLGLFQGVIPRIGLNIWQTLFMVSLVHVIGDIKK*
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mRNA from alignment at tig00004370_pilon:1255009..1255866+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9058.t1 ID=Gchil9058.t1|Name=Gchil9058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00004370_pilon:1255009..1255866+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCACCAAGTGGGAAGAAGTCTGCCAAAGATGTTCGCAACGGGGCTCT
GCTGCAGATGGCGGAAGCCGCTACATTAGGACTCCCGTTGGAGGTATGGA
AAACGCGTATGGGGCGCTTTCGAACCGAATCAACAATCGAGGCATTCAAG
AATGTATACTCATCTGCCGGCGGAGGGATGAATGGGGTGGGCGCATTTTG
GCGTGGATTCAGTCCTAAGATGGTTGAAAGCGCAACGAAAGGGGCCGTGC
TGATGGTGGCGAAGGAGACTCTGAGAGATGCCGGAACGAATGCTGGCCTG
CCTCCGTTCGCTGCCGCTGTGCTTAGTGGAGCTGGTGGAGGCGTCTGCCA
AGTGGTTGTAATGGGCCCCTGCACATATCTTGTTACAGCGGCCGTTACGG
GGGGTGGATCAACATCAGGCGTGGAATTGGCGAAGCAGACGTATACCAAG
AGTGGAATTCGCGGGTTCTATCCTGGTGGGAGCGCGATCGCCTTTCGTCA
GGCCACGAACTGGGCGTCTCGACAGGGTTTGACGGAATGGGTGCGAATTC
GCATGCGTAAATGGAAGTACGGGGATGATACCGCGAAGTTGACAAAAGGC
GAAGAAGGACTGTGTGGGGTGATTGGGGGAACAATGTCAAGCTGGAACCA
TCCCTTCGAAGTCGCCCGCATTGAGATGCAGGCTAGGGCGAATGCTGGGC
AATCATCATTGGGACTGGGTCAGGTTTTGAGAATGGTGGTGAAGGAGCAG
GGCCCACTAGGTCTGTTCCAAGGAGTAATCCCTCGCATTGGACTGAATAT
ATGGCAGACGCTGTTTATGGTGAGTCTAGTTCATGTAATAGGAGACATTA
AGAAGTAA
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Coding sequence (CDS) from alignment at tig00004370_pilon:1255009..1255866+

>Gchil9058.t1 ID=Gchil9058.t1|Name=Gchil9058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=858bp|location=Sequence derived from alignment at tig00004370_pilon:1255009..1255866+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCACCAAGTGGGAAGAAGTCTGCCAAAGATGTTCGCAACGGGGCTCT
GCTGCAGATGGCGGAAGCCGCTACATTAGGACTCCCGTTGGAGGTATGGA
AAACGCGTATGGGGCGCTTTCGAACCGAATCAACAATCGAGGCATTCAAG
AATGTATACTCATCTGCCGGCGGAGGGATGAATGGGGTGGGCGCATTTTG
GCGTGGATTCAGTCCTAAGATGGTTGAAAGCGCAACGAAAGGGGCCGTGC
TGATGGTGGCGAAGGAGACTCTGAGAGATGCCGGAACGAATGCTGGCCTG
CCTCCGTTCGCTGCCGCTGTGCTTAGTGGAGCTGGTGGAGGCGTCTGCCA
AGTGGTTGTAATGGGCCCCTGCACATATCTTGTTACAGCGGCCGTTACGG
GGGGTGGATCAACATCAGGCGTGGAATTGGCGAAGCAGACGTATACCAAG
AGTGGAATTCGCGGGTTCTATCCTGGTGGGAGCGCGATCGCCTTTCGTCA
GGCCACGAACTGGGCGTCTCGACAGGGTTTGACGGAATGGGTGCGAATTC
GCATGCGTAAATGGAAGTACGGGGATGATACCGCGAAGTTGACAAAAGGC
GAAGAAGGACTGTGTGGGGTGATTGGGGGAACAATGTCAAGCTGGAACCA
TCCCTTCGAAGTCGCCCGCATTGAGATGCAGGCTAGGGCGAATGCTGGGC
AATCATCATTGGGACTGGGTCAGGTTTTGAGAATGGTGGTGAAGGAGCAG
GGCCCACTAGGTCTGTTCCAAGGAGTAATCCCTCGCATTGGACTGAATAT
ATGGCAGACGCTGTTTATGGTGAGTCTAGTTCATGTAATAGGAGACATTA
AGAAGTAA
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