Gchil7610.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male
|
Overview
Homology
BLAST of Gchil7610.t1 vs. uniprot
Match: A0A2V3ITR4_9FLOR (Exosome complex component RRP4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITR4_9FLOR) HSP 1 Score: 484 bits (1245), Expect = 3.680e-171 Identity = 241/283 (85.16%), Postives = 268/283 (94.70%), Query Frame = 0
Query: 8 SFVIFRPKRVSDNTDAVSRLAHVPITSPGSIIPTEDHSVRARGTLLSNTESGSVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVEIASKRYRIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDLVSAEVQEQRKDGTVALHTRSLRYGKLSGGQLVTVQSELVKRAKKHFHELPCGVHTILGNNGYVFLSSMQNGPLSVEMRRRIARVANSVLALDSEFIAIGPDTIMDAYETSISNSVQVKDMCQPDIMRSICMGARSMRDAA 290
SF I RPKR+SDN + VSRL+HVPITSPGS+IPTEDHSVRARGTLLS ESG+VLTATRAGVISRVNKLVMVMPLR+RYIPETGDVVVGRVVEIA+KRY++DVNATKHAFLLLTAINLPGGV RRRNQEDELNMR+YFKEGDLVSAEVQE+RKDG+VALHTRSLRYGKLS GQLVTVQSELVKRAKKHFHELPCGVHTILGNNG++FLS + G +S+EMRRRIARVANS+LALDSEFIAIGPDTIMD Y+TS++N V+VKDMC PD+++SIC+GARSMR+AA
Sbjct: 10 SFTILRPKRLSDNAEPVSRLSHVPITSPGSVIPTEDHSVRARGTLLSCGESGNVLTATRAGVISRVNKLVMVMPLRSRYIPETGDVVVGRVVEIANKRYKMDVNATKHAFLLLTAINLPGGVHRRRNQEDELNMRQYFKEGDLVSAEVQERRKDGSVALHTRSLRYGKLSAGQLVTVQSELVKRAKKHFHELPCGVHTILGNNGFIFLSQTRKGAISLEMRRRIARVANSILALDSEFIAIGPDTIMDVYQTSLANGVEVKDMCTPDVVKSICVGARSMREAA 292
BLAST of Gchil7610.t1 vs. uniprot
Match: R7Q340_CHOCR (KH_dom_type_1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q340_CHOCR) HSP 1 Score: 370 bits (949), Expect = 3.450e-126 Identity = 194/286 (67.83%), Postives = 225/286 (78.67%), Query Frame = 0
Query: 8 SFVIFRPKRVSDNTDAVSRLAHVPITSPGSIIPTEDHSVRARGTLLSNTESGSVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVEIASKRYRIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDLVSAEVQEQRKDGTVALHTRSLRYGKLSGGQLVTVQSELVKRAKKHFHELPCGVHTILGNNGYVFLSSM---QNGPLSVEMRRRIARVANSVLALDSEFIAIGPDTIMDAYETSISNSVQVKDMCQPDIMRSICMGARSMRDAA 290
+F I RP S A + L+H+PIT PGS IPTED SVRARGTLLS T S VLTAT AGVI+RVNKLVMV PLRA+YIPETGDVV+GRV ++A +R+R+DVNA +HA LLL+A+NLPGG+QRRR +DELNMR +F EGDLVSAEVQEQ DG VALHTRSLRYGKLSGG V VQ ELVKRAKKHFH L CGVH ILGNNGY+FL+ + G + EMR+ +ARV N+VLALD+EFIAIGPDTIM Y+ SI V+++DM +PDI IC GARSMR AA
Sbjct: 5 TFSIVRPPPPST---ASAPLSHIPITIPGSTIPTEDLSVRARGTLLSTTGSTRVLTATVAGVITRVNKLVMVRPLRAKYIPETGDVVIGRVTDLAGRRWRLDVNAARHAILLLSAVNLPGGIQRRRTYQDELNMRAFFTEGDLVSAEVQEQWDDGCVALHTRSLRYGKLSGGTFVPVQPELVKRAKKHFHRLDCGVHAILGNNGYIFLAERAEKEGGATTPEMRKMVARVRNAVLALDTEFIAIGPDTIMSVYDASIEEGVELRDMTRPDITAKICEGARSMRAAA 287
BLAST of Gchil7610.t1 vs. uniprot
Match: A0A2V3IQJ5_9FLOR (Exosome complex component RRP4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQJ5_9FLOR) HSP 1 Score: 356 bits (914), Expect = 5.230e-120 Identity = 192/287 (66.90%), Postives = 229/287 (79.79%), Query Frame = 0
Query: 8 SFVIFRPKRVSDNTDAVSRLAHVPITSPGSIIPTEDHSVRARGTLLSNTESGSVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVEIASKRYRIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDLVSAEVQEQRKDGTVALHTRSLRYG----KLSGGQLVTVQSELVKRAKKHFHELPCGVHTILGNNGYVFLSSMQNGPLSVEMRRRIARVANSVLALDSEFIAIGPDTIMDAYETSISNSVQVKDMCQPDIMRSICMGARSMRDAA 290
SF I RPKR+SDN +AVSRL+HVPITSPGS+I TEDHSVR R TLLS ESG+VLTATRAG ISRVNKLVMV+PL +RYI ETGDVV GRVVEIASKRY++DVNATK AFLLLTAI LPGGV RRRNQEDELNMR+Y ++ + ++ + + T A + YG + GGQLVT+QSELVKRAKKHFHELPCGVH L +NG+VFLS + + +++ RI RV+N++LALDSEF AIGPDTIM AYETS +N ++VKDMC PD+++ I MGARSMR+AA
Sbjct: 10 SFTILRPKRLSDNAEAVSRLSHVPITSPGSVILTEDHSVRVRRTLLSCGESGNVLTATRAGFISRVNKLVMVVPLCSRYILETGDVVGGRVVEIASKRYKMDVNATKLAFLLLTAIKLPGGVHRRRNQEDELNMREYCISKRVIWSVLKFRNDEKTAASPSTRECYGIESCPVDGGQLVTLQSELVKRAKKHFHELPCGVHMTLRDNGFVFLSQTRKNAILLQIWWRIGRVSNNILALDSEFNAIGPDTIMYAYETSPANGMEVKDMCTPDVVKIIGMGARSMREAA 296
BLAST of Gchil7610.t1 vs. uniprot
Match: A0A2V3IW84_9FLOR (Exosome complex component RRP4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IW84_9FLOR) HSP 1 Score: 350 bits (897), Expect = 1.990e-117 Identity = 191/283 (67.49%), Postives = 217/283 (76.68%), Query Frame = 0
Query: 8 SFVIFRPKRVSDNTDAVSRLAHVPITSPGSIIPTEDHSVRARGTLLSNTESGSVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVEIASKRYRIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDLVSAEVQEQRKDGTVALHTRSLRYGKLSGGQLVTVQSELVKRAKKHFHELPCGVHTILGNNGYVFLSSMQNGPLSVEMRRRIARVANSVLALDSEFIAIGPDTIMDAYETSISNSVQVKDMCQPDIMRSICMGARSMRDAA 290
SF I RPKR+SDN +AVSRL+HVPITSPGS+I EDHSVRAR TLLS ES +VLTAT AGVISRVNKLVMVMPLR+RYI ETG VV GRVVEIASKRY++DVNATK AFLLLTAI LPG V RRRNQEDELNMR+YFKEGDL LVT+QSELVKRAKKHFHELPCGVH L NNG+VFLS + + +E+ RIARV+N++LALDSEF IGPDTIM AYETS++N ++VKDMC PD+++ I MGAR MR+AA
Sbjct: 10 SFTILRPKRLSDNAEAVSRLSHVPITSPGSVILAEDHSVRARRTLLSCGESENVLTATHAGVISRVNKLVMVMPLRSRYILETGVVVGGRVVEIASKRYKMDVNATKIAFLLLTAIKLPGNVHRRRNQEDELNMREYFKEGDL------------------------------LVTLQSELVKRAKKHFHELPCGVHMTLHNNGFVFLSQTRKDAILLEIWWRIARVSNNILALDSEFNEIGPDTIMYAYETSLANGMEVKDMCTPDVVKIIGMGARPMREAA 262
BLAST of Gchil7610.t1 vs. uniprot
Match: A0A2V3IDP5_9FLOR (Exosome complex component rrp4 n=5 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDP5_9FLOR) HSP 1 Score: 265 bits (676), Expect = 5.250e-86 Identity = 140/173 (80.92%), Postives = 156/173 (90.17%), Query Frame = 0
Query: 8 SFVIFRPKRVSDNTDAVSRLAHVPITSPGSIIPTEDHSVRARGTLLSNTESGSVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVEIASKRYRIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDLVSAEVQEQRKDGTVALHTRSLRYGKLSGGQ 180
SF I RPKR+SDN +AVSRL+HVPITSPGS+I TEDHSVRAR TLLS ESG+VLTATRAGVISRVNKLVMVMPLR+ YI ETGDVV GRVVEI+SK Y++DVNATK AFLLLTAI LPGGV+RRRNQEDE+NMR+ F+EGDLVSAEVQE+RKDG+VALH R LRY KLSGG+
Sbjct: 10 SFTILRPKRLSDNAEAVSRLSHVPITSPGSVILTEDHSVRARRTLLSCGESGNVLTATRAGVISRVNKLVMVMPLRSPYILETGDVVGGRVVEISSKLYKMDVNATKLAFLLLTAIKLPGGVRRRRNQEDEINMRESFREGDLVSAEVQERRKDGSVALHARMLRYRKLSGGR 182
BLAST of Gchil7610.t1 vs. uniprot
Match: M2XZF0_GALSU (Ribosomal RNA-processing protein 4 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XZF0_GALSU) HSP 1 Score: 247 bits (630), Expect = 1.240e-77 Identity = 128/272 (47.06%), Postives = 181/272 (66.54%), Query Frame = 0
Query: 34 SPGSIIPTEDHSVRARGTLLSNTESGSVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVEIASKRYRIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDLVSAEVQEQRKDGTVALHTRSLRYGKLSGGQLVTVQSELVKRAKKHFHELPCGVHTILGNNGYV-----------------FLSSMQNGPLSVEMRRRIARVANSVLALDSEFIAIGPDTIMDAYETSISNSVQVKDMCQPDIMRSICMGARSMRD 288
+PG I +++ VR GT++ T LT+T AG++ RVNKLV V+P+RARY E GDV+VGR+ +I S+R+++DVN+ + A LLL+A+NLPGGVQRRR EDEL MR++F + DL+SAEVQE ++DG + LHTRSL+YGKL G ++V +LVKR+KKHFH L CGVH ILG+NGYV F +N ++E R + RV NS+ LD F++I P+TIM YE +I ++ V+ M +PDI+ I ++ ++
Sbjct: 32 APGDDILSQESVVRGHGTMVQGTR----LTSTVAGIVERVNKLVAVLPIRARYSAEVGDVIVGRIRDIVSRRWKVDVNSRQDAVLLLSAVNLPGGVQRRRTYEDELKMREFFDQDDLISAEVQELKQDGLIMLHTRSLKYGKLENGIFISVTPQLVKRSKKHFHRLSCGVHIILGDNGYVWIYVDDAAYGEDEEEANFSKRRENDKSNLEQRLSLIRVRNSICILDLYFLSIQPETIMLIYEETIRRNIPVQHMLRPDIINDIYRTVKNTKE 299
BLAST of Gchil7610.t1 vs. uniprot
Match: A0A1X6NNN7_PORUM (KH_dom_type_1 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NNN7_PORUM) HSP 1 Score: 247 bits (631), Expect = 6.140e-77 Identity = 150/335 (44.78%), Postives = 187/335 (55.82%), Query Frame = 0
Query: 13 RPKRVSDNTDAV-------SRLAHVPITSPGSIIPTEDHSVRARGTLLS------------------NTESGSVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVEIASKRYRIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDLVSAEVQEQRKDGTVALHTRSLRYGKLSGGQLVTVQSELVKRAKKHFHELPCGVHTILGNNGYVFLSSMQ--------------------------------NGPLSVEMRRRIARVANSVLALDSEFIAIGPDTIMDAYETSISNSVQVKDMCQPDIMRSICMGARSMRDAA 290
RP R + T AV L+HVP+ G I E +R GT L+ + G L AT GV+ RVN+LV V PLR+RY P+ GDVVV RVV+IA+KR+R DV +HA L L+A+NLPGGVQRRR DE NMR+ F+EGDL+SAEVQE R DG +ALHTRSL+YGKL GG LV LVKR+KKHFH L CGV ILGNNGY++LS + L VE+R +ARV N++ ALD +F+AI TIMD ++ S + V V DM +P ++ I AR R A
Sbjct: 30 RPARAMEVTRAVRPPPRSTDHLSHVPVVVTGDGIAVEPGFLRGHGTQLTAAGVAXXXXXXXXXXXXXTPDDGRALRATLTGVVKRVNQLVAVAPLRSRYAPQVGDVVVARVVDIAAKRWRCDVAGQQHAALALSAVNLPGGVQRRRTAADERNMRELFEEGDLLSAEVQELRHDGGIALHTRSLKYGKLVGGVLVVASPALVKRSKKHFHLLGCGVWAILGNNGYIWLSPTDPAGGRGAARDAMEEADESDGGAADGGDAAAPVDAELGVEVRLTLARVRNAIAALDQQFVAIHAATIMDVFDASETAGVDVADMSRPAVVELITATARERRVVA 364
BLAST of Gchil7610.t1 vs. uniprot
Match: A0A3P3YCJ4_PLABS (Ribosomal RNA-processing protein 4 n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YCJ4_PLABS) HSP 1 Score: 233 bits (594), Expect = 4.140e-72 Identity = 128/274 (46.72%), Postives = 173/274 (63.14%), Query Frame = 0
Query: 14 PKRVSDNTDAVSRLAHVPITSPGSIIPTEDHSVRARGTLLSNTESGSVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVEIASKRYRIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDLVSAEVQEQRKDGTVALHTRSLRYGKLSGGQLVTVQSELVKRAKKHFHELP-CGVHTILGNNGYVFLSSMQNGP---LSVEMRRRIARVANSVLALDSEFIAIGPDTIMDAYETSISNSVQVKDMCQPDIMRSICMGA 283
P R T ++ L P SPG +I TE + GT L E L AT AG + +VNKL+ V PL RY + GDVV+GRV ++ KR+++D+N+ + L+L++I+LPGGVQRRR QED L MR++F+EGDL+SAEVQ DG VALHTRS +YGKL+ GQ V V+ LVKR K+HF LP C V ILGNNGY++++ +G S E R+++ARV S++ALD F+AI PD++MD Y SI V D+ D + + A
Sbjct: 29 PCRTLYRTMSIRSLHANPFVSPGEVITTESGFLWGHGTKLG--EEDKQLRATVAGFVEQVNKLLTVRPLTQRYAGDIGDVVIGRVTQVGDKRWKVDINSRQDGILMLSSIHLPGGVQRRRTQEDSLQMREFFEEGDLISAEVQNFYHDGAVALHTRSSKYGKLNRGQFVVVRQALVKRCKQHFVTLPDCNVDIILGNNGYIWITESSDGSGAGESAERRQQMARVRQSIVALDRMFVAIFPDSVMDVYHDSIDLGVSPADITHRDYIHRVTQKA 300
BLAST of Gchil7610.t1 vs. uniprot
Match: C3ZTA6_BRAFL (Ribosomal RNA-processing protein 4 n=4 Tax=Branchiostoma TaxID=7737 RepID=C3ZTA6_BRAFL) HSP 1 Score: 225 bits (574), Expect = 1.810e-69 Identity = 123/255 (48.24%), Postives = 165/255 (64.71%), Query Frame = 0
Query: 32 ITSPGSIIPTEDHSVRARGTLLSNTESGSVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVEIASKRYRIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDLVSAEVQEQRKDGTVALHTRSLRYGKLSGGQLVTVQSELVKRAKKHFHELPCGVHTILGNNGYVFLSSMQNG--PLSVEMRRRIARVANSVLALDSEFIAIGPDTIMDAYETSISNSVQVKDMCQPDIMRSICMGAR 284
+ +PG +I T+ +R GT + + + L A+ AGV+ RVNKL+ V PL+ RY E GDVVVGRV E+ +R+R+DVN+ A L+L+A+NLPGG RRR+ EDEL MR+Y EGDL+SAEVQ DG ++LHTRSL+YGKL+ G +V V LVKR K HFH LPCG ILGNNGYV++S N P+ R IAR+ N +L+L + + + +++ AYE S QVKD+ QPDI + R
Sbjct: 23 LVTPGDVITTDTGYMRGHGTYMDDDK----LKASLAGVVERVNKLICVQPLKTRYNGEIGDVVVGRVTEVGQRRWRVDVNSRLDAVLMLSAVNLPGGELRRRSAEDELMMREYLVEGDLISAEVQAIFHDGALSLHTRSLKYGKLAQGVMVQVSPSLVKRRKTHFHNLPCGASVILGNNGYVWISPTVNDEKPVPSTDREVIARLRNCILSLATHKLMLYDTSVLYAYEAS--RQYQVKDLLQPDIAEKVADDTR 271
BLAST of Gchil7610.t1 vs. uniprot
Match: A0A0L0HQ67_SPIPD (Ribosomal RNA-processing protein 4 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HQ67_SPIPD) HSP 1 Score: 220 bits (560), Expect = 4.850e-67 Identity = 121/271 (44.65%), Postives = 168/271 (61.99%), Query Frame = 0
Query: 32 ITSPGSIIPTEDHSVRARGTLLSNTESGSVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVEIASKRYRIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDLVSAEVQEQRKDGTVALHTRSLRYGKLSGGQLVTVQSELVKRAKKHFHELPCGVHTILGNNGYVFLSSM-----------------QNGPLSVEMRRRIARVANSVLALDSEFIAIGPDTIMDAYETSISNSVQVKDMCQPDIMRSICMGARS 285
I +PG ++ + +R GT + L A+ AGV+ RVNKL+ V PLR RY E GDVVVGR+ E+ +R+++D+NA + A LLL+++NLPGGVQRR+ + DEL MR +F EGD++SAEVQ +DG +LHTRS++YGKL G LV V S LVKR K HF LPCGV ILG NGY++++ +N P+S R+ IARV +S++AL I I+ +E S+ + V KDM +PDI + I + AR+
Sbjct: 31 IVTPGEVVTRDTAFMRGHGTYTED----DALVASMAGVVDRVNKLISVRPLRTRYNGEIGDVVVGRITEVGPRRWKVDINARQDAVLLLSSVNLPGGVQRRKTESDELQMRSFFGEGDMLSAEVQAFFQDGAASLHTRSIKYGKLRNGSLVIVPSALVKRTKSHFATLPCGVDVILGLNGYIWVAKHVAISPEIVNQPDALYHNENEPISDAERQTIARVCSSIVALSRHNNFINDTMIVYTFEASMGHPV--KDMLKPDICQQIVLAARA 295 The following BLAST results are available for this feature:
BLAST of Gchil7610.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Gchil7610.t1 ID=Gchil7610.t1|Name=Gchil7610.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=291bpback to top |