Gchil7610.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7610.t1
Unique NameGchil7610.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:2202471..2203343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705548.1
Preferred nameEXOSC2
PFAMsECR1_N,KH_6
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078
KEGG koko:K03679,ko:K10572
KEGG ReactionR05202
KEGG Pathwayko00562,ko01100,ko03018,ko04070,map00562,map01100,map03018,map04070
KEGG ModuleM00132,M00390,M00391
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000228,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000785,GO:0000790,GO:0000956,GO:0001558,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005652,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008298,GO:0008312,GO:0008408,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0022613,GO:0030307,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031329,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0034399,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0040008,GO:0042254,GO:0043144,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045927,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051179,GO:0051252,GO:0051607,GO:0051641,GO:0051704,GO:0051707,GO:0060147,GO:0060149,GO:0060255,GO:0060968,GO:0060969,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0070727,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071031,GO:0071033,GO:0071034,GO:0071035,GO:0071038,GO:0071042,GO:0071043,GO:0071046,GO:0071047,GO:0071049,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0098542,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354
Evalue1.22e-77
EggNOG OGsCOG1097@1|root,KOG3013@2759|Eukaryota
EC2.7.1.158
Descriptionnuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7610Gchil7610Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 2202471..2203343 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7610.t1.stop1Gchil7610.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 2202471..2202473 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7610.t1.CDS1Gchil7610.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 2202471..2203343 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7610.t1.exon1Gchil7610.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 2202471..2203343 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7610.t1.start1Gchil7610.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 2203341..2203343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7610.t1Gchil7610.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 2202471..2203343 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7610.t1 ID=Gchil7610.t1|Name=Gchil7610.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=291bp
MDVDKQNSFVIFRPKRVSDNTDAVSRLAHVPITSPGSIIPTEDHSVRARG
TLLSNTESGSVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVE
IASKRYRIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDL
VSAEVQEQRKDGTVALHTRSLRYGKLSGGQLVTVQSELVKRAKKHFHELP
CGVHTILGNNGYVFLSSMQNGPLSVEMRRRIARVANSVLALDSEFIAIGP
DTIMDAYETSISNSVQVKDMCQPDIMRSICMGARSMRDAA*
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spliced messenger RNA

>Gchil7610.t1 ID=Gchil7610.t1|Name=Gchil7610.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00000007_pilon:2202471..2203343- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGTCGACAAACAAAACTCTTTCGTCATTTTCCGCCCAAAGCGCGT
ATCAGACAATACCGATGCAGTTTCACGACTTGCGCACGTGCCTATCACCT
CGCCAGGTTCCATCATACCCACGGAGGATCACTCCGTCCGAGCCCGCGGA
ACGCTACTCAGCAACACCGAGTCTGGAAGCGTGCTCACCGCAACACGAGC
CGGAGTCATATCGCGCGTGAACAAACTGGTTATGGTCATGCCACTGCGCG
CGCGGTACATACCAGAGACGGGTGATGTGGTTGTTGGTCGTGTTGTAGAG
ATTGCGAGTAAACGATACAGAATTGATGTGAATGCCACGAAGCATGCGTT
TCTACTGCTCACAGCAATAAATCTTCCTGGCGGGGTTCAGAGGCGTCGCA
ATCAAGAAGATGAACTGAACATGCGAAAGTACTTTAAGGAAGGTGACTTA
GTCAGTGCTGAGGTTCAGGAGCAGCGAAAAGACGGCACTGTAGCGTTGCA
CACGAGAAGTCTTCGCTACGGGAAGTTATCAGGAGGGCAACTCGTCACAG
TACAGTCCGAGCTCGTCAAGAGAGCAAAGAAGCACTTCCACGAACTTCCG
TGCGGGGTTCACACTATTCTAGGGAACAACGGGTACGTCTTCCTGTCCTC
CATGCAAAATGGACCGCTTTCTGTGGAGATGAGGCGCCGAATAGCGAGAG
TTGCAAACAGCGTATTGGCCTTGGACAGCGAGTTCATAGCGATCGGGCCA
GACACTATCATGGACGCGTACGAGACAAGCATTTCGAACTCTGTGCAAGT
AAAAGATATGTGCCAACCCGATATCATGCGAAGTATTTGCATGGGTGCTC
GGTCTATGAGGGATGCGGCCTGA
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protein sequence of Gchil7610.t1

>Gchil7610.t1 ID=Gchil7610.t1|Name=Gchil7610.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=291bp
MDVDKQNSFVIFRPKRVSDNTDAVSRLAHVPITSPGSIIPTEDHSVRARG
TLLSNTESGSVLTATRAGVISRVNKLVMVMPLRARYIPETGDVVVGRVVE
IASKRYRIDVNATKHAFLLLTAINLPGGVQRRRNQEDELNMRKYFKEGDL
VSAEVQEQRKDGTVALHTRSLRYGKLSGGQLVTVQSELVKRAKKHFHELP
CGVHTILGNNGYVFLSSMQNGPLSVEMRRRIARVANSVLALDSEFIAIGP
DTIMDAYETSISNSVQVKDMCQPDIMRSICMGARSMRDAA*
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mRNA from alignment at tig00000007_pilon:2202471..2203343-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7610.t1 ID=Gchil7610.t1|Name=Gchil7610.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00000007_pilon:2202471..2203343- (Gracilaria chilensis NLEC103_M9 male)
ATGGATGTCGACAAACAAAACTCTTTCGTCATTTTCCGCCCAAAGCGCGT
ATCAGACAATACCGATGCAGTTTCACGACTTGCGCACGTGCCTATCACCT
CGCCAGGTTCCATCATACCCACGGAGGATCACTCCGTCCGAGCCCGCGGA
ACGCTACTCAGCAACACCGAGTCTGGAAGCGTGCTCACCGCAACACGAGC
CGGAGTCATATCGCGCGTGAACAAACTGGTTATGGTCATGCCACTGCGCG
CGCGGTACATACCAGAGACGGGTGATGTGGTTGTTGGTCGTGTTGTAGAG
ATTGCGAGTAAACGATACAGAATTGATGTGAATGCCACGAAGCATGCGTT
TCTACTGCTCACAGCAATAAATCTTCCTGGCGGGGTTCAGAGGCGTCGCA
ATCAAGAAGATGAACTGAACATGCGAAAGTACTTTAAGGAAGGTGACTTA
GTCAGTGCTGAGGTTCAGGAGCAGCGAAAAGACGGCACTGTAGCGTTGCA
CACGAGAAGTCTTCGCTACGGGAAGTTATCAGGAGGGCAACTCGTCACAG
TACAGTCCGAGCTCGTCAAGAGAGCAAAGAAGCACTTCCACGAACTTCCG
TGCGGGGTTCACACTATTCTAGGGAACAACGGGTACGTCTTCCTGTCCTC
CATGCAAAATGGACCGCTTTCTGTGGAGATGAGGCGCCGAATAGCGAGAG
TTGCAAACAGCGTATTGGCCTTGGACAGCGAGTTCATAGCGATCGGGCCA
GACACTATCATGGACGCGTACGAGACAAGCATTTCGAACTCTGTGCAAGT
AAAAGATATGTGCCAACCCGATATCATGCGAAGTATTTGCATGGGTGCTC
GGTCTATGAGGGATGCGGCCTGA
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Coding sequence (CDS) from alignment at tig00000007_pilon:2202471..2203343-

>Gchil7610.t1 ID=Gchil7610.t1|Name=Gchil7610.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=873bp|location=Sequence derived from alignment at tig00000007_pilon:2202471..2203343- (Gracilaria chilensis NLEC103_M9 male)
ATGGATGTCGACAAACAAAACTCTTTCGTCATTTTCCGCCCAAAGCGCGT
ATCAGACAATACCGATGCAGTTTCACGACTTGCGCACGTGCCTATCACCT
CGCCAGGTTCCATCATACCCACGGAGGATCACTCCGTCCGAGCCCGCGGA
ACGCTACTCAGCAACACCGAGTCTGGAAGCGTGCTCACCGCAACACGAGC
CGGAGTCATATCGCGCGTGAACAAACTGGTTATGGTCATGCCACTGCGCG
CGCGGTACATACCAGAGACGGGTGATGTGGTTGTTGGTCGTGTTGTAGAG
ATTGCGAGTAAACGATACAGAATTGATGTGAATGCCACGAAGCATGCGTT
TCTACTGCTCACAGCAATAAATCTTCCTGGCGGGGTTCAGAGGCGTCGCA
ATCAAGAAGATGAACTGAACATGCGAAAGTACTTTAAGGAAGGTGACTTA
GTCAGTGCTGAGGTTCAGGAGCAGCGAAAAGACGGCACTGTAGCGTTGCA
CACGAGAAGTCTTCGCTACGGGAAGTTATCAGGAGGGCAACTCGTCACAG
TACAGTCCGAGCTCGTCAAGAGAGCAAAGAAGCACTTCCACGAACTTCCG
TGCGGGGTTCACACTATTCTAGGGAACAACGGGTACGTCTTCCTGTCCTC
CATGCAAAATGGACCGCTTTCTGTGGAGATGAGGCGCCGAATAGCGAGAG
TTGCAAACAGCGTATTGGCCTTGGACAGCGAGTTCATAGCGATCGGGCCA
GACACTATCATGGACGCGTACGAGACAAGCATTTCGAACTCTGTGCAAGT
AAAAGATATGTGCCAACCCGATATCATGCGAAGTATTTGCATGGGTGCTC
GGTCTATGAGGGATGCGGCCTGA
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