Gchil8954.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8954.t1
Unique NameGchil8954.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length258
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:386100..386873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8954Gchil8954Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 386100..386873 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8954.t1.start1Gchil8954.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 386100..386102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8954.t1.CDS1Gchil8954.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 386100..386873 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8954.t1.exon1Gchil8954.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 386100..386873 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8954.t1.stop1Gchil8954.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 386871..386873 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8954.t1Gchil8954.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 386100..386873 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8954.t1 ID=Gchil8954.t1|Name=Gchil8954.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=258bp
MSERLHYFAEATTPVSFDCDASEIESDLGDLRRPQTDTDRLNNHTRQLQL
WSDEARRRLGASVTQSSPTVQRRVTHSSPPPPPPTPPTPDRHQSNLSERA
RSATSRPVPRSHSAKNLRIRVTPSSSSKSLLSDIESELCAHAAHTASSSA
PTSPRLRAALAPPSSQRAPLSQPSQQPHQAASAVVKAPRPQPLPAALVLS
PTNVEPVSATRRGKLLRHDNDDDDDDDDSDADASLSRRQSFYRRIKRFSL
RRLLRRS*
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spliced messenger RNA

>Gchil8954.t1 ID=Gchil8954.t1|Name=Gchil8954.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00004370_pilon:386100..386873+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGAGCGGCTGCACTACTTTGCCGAGGCCACCACGCCGGTGTCCTT
CGACTGCGATGCCTCGGAAATCGAGTCCGACCTAGGCGATCTACGCCGCC
CTCAAACCGATACAGACCGTCTCAACAACCACACGCGCCAGCTCCAGCTC
TGGTCTGACGAGGCGCGTCGTCGTCTCGGCGCTTCCGTCACACAATCATC
GCCAACTGTCCAACGTCGCGTCACACACTCTTCACCACCTCCGCCCCCAC
CCACCCCACCCACGCCGGACCGTCACCAATCCAATCTCTCCGAGCGCGCG
CGCTCGGCAACCTCACGTCCCGTGCCGCGCTCGCACTCGGCGAAGAATTT
ACGCATTCGTGTCACTCCGTCGTCGTCGTCCAAATCGCTACTATCTGACA
TTGAATCCGAACTGTGTGCACACGCCGCACATACTGCATCGTCCTCCGCG
CCCACCAGTCCACGCTTGCGTGCGGCGTTGGCGCCACCGTCGTCGCAACG
AGCGCCGTTGTCACAACCGTCGCAACAACCGCACCAAGCTGCGTCTGCCG
TGGTGAAGGCGCCGCGTCCGCAGCCGTTGCCGGCTGCTTTGGTGCTCTCG
CCGACTAACGTCGAGCCGGTGTCGGCCACGCGTCGTGGAAAGTTGCTACG
TCacgacaacgatgacgacgatgatgacgatgacagcgatgctgatgCTT
CTCTATCCCGACGACAGAGCTTTTATCGTCGGATAAAACGCTTCTCGCTC
AGGAGGTTGCTACGACGCTCTTGA
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protein sequence of Gchil8954.t1

>Gchil8954.t1 ID=Gchil8954.t1|Name=Gchil8954.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=258bp
MSERLHYFAEATTPVSFDCDASEIESDLGDLRRPQTDTDRLNNHTRQLQL
WSDEARRRLGASVTQSSPTVQRRVTHSSPPPPPPTPPTPDRHQSNLSERA
RSATSRPVPRSHSAKNLRIRVTPSSSSKSLLSDIESELCAHAAHTASSSA
PTSPRLRAALAPPSSQRAPLSQPSQQPHQAASAVVKAPRPQPLPAALVLS
PTNVEPVSATRRGKLLRHDNDDDDDDDDSDADASLSRRQSFYRRIKRFSL
RRLLRRS*
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mRNA from alignment at tig00004370_pilon:386100..386873+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8954.t1 ID=Gchil8954.t1|Name=Gchil8954.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00004370_pilon:386100..386873+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGAGCGGCTGCACTACTTTGCCGAGGCCACCACGCCGGTGTCCTT
CGACTGCGATGCCTCGGAAATCGAGTCCGACCTAGGCGATCTACGCCGCC
CTCAAACCGATACAGACCGTCTCAACAACCACACGCGCCAGCTCCAGCTC
TGGTCTGACGAGGCGCGTCGTCGTCTCGGCGCTTCCGTCACACAATCATC
GCCAACTGTCCAACGTCGCGTCACACACTCTTCACCACCTCCGCCCCCAC
CCACCCCACCCACGCCGGACCGTCACCAATCCAATCTCTCCGAGCGCGCG
CGCTCGGCAACCTCACGTCCCGTGCCGCGCTCGCACTCGGCGAAGAATTT
ACGCATTCGTGTCACTCCGTCGTCGTCGTCCAAATCGCTACTATCTGACA
TTGAATCCGAACTGTGTGCACACGCCGCACATACTGCATCGTCCTCCGCG
CCCACCAGTCCACGCTTGCGTGCGGCGTTGGCGCCACCGTCGTCGCAACG
AGCGCCGTTGTCACAACCGTCGCAACAACCGCACCAAGCTGCGTCTGCCG
TGGTGAAGGCGCCGCGTCCGCAGCCGTTGCCGGCTGCTTTGGTGCTCTCG
CCGACTAACGTCGAGCCGGTGTCGGCCACGCGTCGTGGAAAGTTGCTACG
TCacgacaacgatgacgacgatgatgacgatgacagcgatgctgatgCTT
CTCTATCCCGACGACAGAGCTTTTATCGTCGGATAAAACGCTTCTCGCTC
AGGAGGTTGCTACGACGCTCTTGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:386100..386873+

>Gchil8954.t1 ID=Gchil8954.t1|Name=Gchil8954.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=774bp|location=Sequence derived from alignment at tig00004370_pilon:386100..386873+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGAGCGGCTGCACTACTTTGCCGAGGCCACCACGCCGGTGTCCTT
CGACTGCGATGCCTCGGAAATCGAGTCCGACCTAGGCGATCTACGCCGCC
CTCAAACCGATACAGACCGTCTCAACAACCACACGCGCCAGCTCCAGCTC
TGGTCTGACGAGGCGCGTCGTCGTCTCGGCGCTTCCGTCACACAATCATC
GCCAACTGTCCAACGTCGCGTCACACACTCTTCACCACCTCCGCCCCCAC
CCACCCCACCCACGCCGGACCGTCACCAATCCAATCTCTCCGAGCGCGCG
CGCTCGGCAACCTCACGTCCCGTGCCGCGCTCGCACTCGGCGAAGAATTT
ACGCATTCGTGTCACTCCGTCGTCGTCGTCCAAATCGCTACTATCTGACA
TTGAATCCGAACTGTGTGCACACGCCGCACATACTGCATCGTCCTCCGCG
CCCACCAGTCCACGCTTGCGTGCGGCGTTGGCGCCACCGTCGTCGCAACG
AGCGCCGTTGTCACAACCGTCGCAACAACCGCACCAAGCTGCGTCTGCCG
TGGTGAAGGCGCCGCGTCCGCAGCCGTTGCCGGCTGCTTTGGTGCTCTCG
CCGACTAACGTCGAGCCGGTGTCGGCCACGCGTCGTGGAAAGTTGCTACG
TCacgacaacgatgacgacgatgatgacgatgacagcgatgctgatgCTT
CTCTATCCCGACGACAGAGCTTTTATCGTCGGATAAAACGCTTCTCGCTC
AGGAGGTTGCTACGACGCTCTTGA
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