Gchil7527.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7527.t1
Unique Name	Gchil7527.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	829

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000007_pilon	contig	tig00000007_pilon:1764832..1767318 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	529818.AMSG_07410T0
Max annot lvl	2759\|Eukaryota
Evalue	2.15e-58
EggNOG OGs	COG5411@1\|root,KOG0565@2759\|Eukaryota
Description	phosphatidylinositol dephosphorylation
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7527	Gchil7527	Gracilaria chilensis NLEC103_M9 male	gene	tig00000007_pilon 1764832..1767318 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7527.t1.start1	Gchil7527.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000007_pilon 1764832..1764834 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7527.t1.CDS1	Gchil7527.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000007_pilon 1764832..1767318 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7527.t1.exon1	Gchil7527.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000007_pilon 1764832..1767318 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7527.t1.stop1	Gchil7527.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000007_pilon 1767316..1767318 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7527.t1	Gchil7527.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000007_pilon 1764832..1767318 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000007_pilon:1764832..1767318+
coding sequence from alignment at tig00000007_pilon:1764832..1767318+

mRNA sequence

>Gchil7527.t1 ID=Gchil7527.t1|Name=Gchil7527.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=829bp
MMSAGGGIMMKPDRDTVSNPWQMAVCAPFGQISALDIQRLQLTIASRDTT
DRNAYHATVVVSGGGDHWRASASCAASSCHLAQPSSYIDMDGVDQPAARG
ALLWRLLSNPYCISATACGLLAVAVSFYLSRPRAQRLPPRLRRVRHALRQ
LSPSTFLFRISANGAGLLLCTQRRALFSLSKARGSGPSHIELDGAHYEQQ
LIGLVENLRLVKRGLFFERGRAVVLSDGQKQHVFEFLTRHAADTFLHFLA
HVREQSAPESLNVFLTTFNIGNHQPPDDLSPWLQQARSAHIIAVGVQECS
YTPSATGSAALQSGDASISQYPASDDSSTSTSDDISASNVSLTDKSSSFE
QRPLLKSELNVSLSSTPLPDHTQTSSSSAKEHWQSLLSVHFPDSQYTCIV
KHAGWDRCLTIFVQNSLFSHVSNIRVDTVNVGVAGVMGNKGAIGARFSVF
DTDFLIINSHLAAHHGEVARRNEDYSSISSGLSDLCDGDQAHVTADPIHY
TFWMGDLNYRINLDRDEVLKHVQNGSWKILHEADQLLQEMDAGRAFYDFS
EGKTNFAPTYRYERGSRQYSSAKMRVPSYCDRILFRSLPGCKLDLEQYQP
VDEIMTSDHSPVYASFRASMSRASAVRSFPSIISEFDEDAETEEAPLLSE
SRSLTLLSRSSAPTEDNRDHLQVVFSTLGATDIPDMDNGGRRIAVAKALR
IENHLVWKKHDELGEGHYADPYCVFRGPSVAELDEGQFRTDTITATQNPV
WNAEQIPEVDLVTNDHTTLPSKYMIITVKDENPARRDSTIGSAILWLGNF
HGDPVQFSAPIMHGGLKRGLIVGRYVIR*

spliced messenger RNA

>Gchil7527.t1 ID=Gchil7527.t1|Name=Gchil7527.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2487bp|location=Sequence derived from alignment at tig00000007_pilon:1764832..1767318+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTCAGCAGGGGGTGGCATCATGATGAAACCGGACCGGGACACCGT
GTCCAATCCATGGCAAATGGCTGTTTGCGCGCCATTTGGACAAATTTCAG
CGCTTGACATCCAACGCCTCCAGTTGACAATTGCCTCCCGCGACACCACA
GACCGCAACGCTTACCACGCAACAGTCGTGGTCAGTGGTGGTGGTGATCA
TTGGCGAGCGAGCGCCTCTTGTGCTGCTAGCAGTTGCCACCTCGCGCAAC
CATCGTCATACATCGATATGGACGGCGTCGACCAACCAGCCGCACGCGGC
GCACTACTATGGCGATTGCTCTCCAACCCGTACTGCATTTCGGCCACCGC
GTGCGGGCTTCTGGCCGTAGCCGTTTCATTCTACCTCTCGCGCCCACGCG
CACAGCGTTTGCCGCCGCGCCTTCGTCGGGTGCGCCACGCCCTGCGACAG
TTGTCTCCCTCGACATTTTTGTTTCGCATCTCCGCAAACGGCGCAGGGCT
TCTACTGTGTACACAGCGACGTGCACTGTTCAGCCTGAGCAAGGCGCGCG
GCAGTGGTCCTAGTCACATTGAACTCGATGGTGCACACTACGAACAACAG
CTCATTGGGCTTGTTGAGAATTTACGGCTTGTCAAGCGCGGCTTGTTCTT
TGAAAGAGGGCGCGCTGTTGTTTTGTCAGATGGTCAAAAGCAGCATGTGT
TTGAATTTCTCACGCGCCACGCTGCGGATACCTTTCTACACTTCCTGGCG
CATGTGCGAGAACAAAGTGCTCCAGAATCCCTCAATGTCTTTCTCACCAC
CTTCAACATTGGAAACCACCAGCCTCCTGACGATTTATCGCCCTGGCTTC
AGCAAGCCCGCTCGGCCCACATCATCGCCGTTGGAGTTCAAGAATGCTCA
TACACCCCATCGGCCACCGGCTCAGCAGCTCTACAGTCCGGTGATGCTTC
AATCTCACAATATCCAGCCTCAGATGATTCGTCAACCTCCACTAGCGATG
ATATTTCGGCCTCAAATGTTTCTCTTACGGACAAATCCTCATCATTTGAG
CAACGCCCTCTGCTGAAATCTGAATTAAATGTATCTCTCTCTTCAACCCC
CTTACCTGATCACACGCAAACCTCCTCGTCGTCTGCTAAGGAGCATTGGC
AGTCATTGCTCTCTGTCCACTTTCCGGATTCGCAGTACACTTGCATCGTC
AAACACGCTGGTTGGGATCGTTGCCTCACTATCTTTGTCCAGAATTCCTT
GTTCTCTCACGTCTCAAACATTCGGGTTGACACTGTGAACGTTGGCGTAG
CTGGAGTTATGGGCAACAAAGGCGCTATCGGTGCACGTTTCAGCGTCTTT
GACACCGATTTTCTCATCATCAACTCACATTTGGCTGCTCATCATGGAGA
AGTTGCTCGCCGCAACGAGGACTATTCTTCCATTTCTTCCGGGCTGAGCG
ATCTTTGCGACGGTGATCAGGCACATGTAACGGCGGATCCTATTCACTAC
ACTTTTTGGATGGGAGATCTCAACTATCGTATCAATCTTGACAGAGATGA
AGTCTTGAAGCATGTGCAGAACGGTTCTTGGAAGATACTACATGAAGCTG
ATCAACTTCTTCAGGAAATGGACGCTGGGAGAGCGTTTTATGATTTCTCG
GAAGGGAAAACGAATTTTGCTCCCACTTATCGGTACGAACGAGGCTCTCG
ACAGTACTCATCCGCAAAGATGCGGGTACCATCCTACTGCGACCGAATCC
TTTTTCGCTCACTTCCCGGATGCAAACTTGACCTTGAACAATACCAGCCT
GTTGACGAGATCATGACGTCGGACCACTCTCCCGTGTATGCGAGTTTTCG
TGCCTCAATGTCGCGTGCGAGTGCTGTGCGAAGTTTTCCAAGTATCATTT
CAGAGTTCGATGAAGACGCTGAAACAGAAGAGGCCCCACTTTTATCGGAA
TCGCGCTCTTTAACTTTGCTGTCGCGGAGCAGTGCACCGACTGAGGATAA
TCGAGACCACTTACAAGTCGTGTTTAGTACTCTTGGTGCCACAGATATTC
CAGACATGGACAATGGGGGGCGCCGCATAGCGGTGGCAAAAGCCCTGCGA
ATCGAAAACCATCTGGTTTGGAAGAAACATGACGAGCTTGGCGAAGGGCA
TTATGCTGATCCCTATTGTGTATTTCGCGGTCCTAGCGTTGCAGAGCTCG
ATGAAGGCCAGTTTCGGACAGATACGATAACCGCGACGCAAAATCCCGTG
TGGAACGCGGAACAGATTCCAGAAGTAGATTTAGTGACGAACGACCATAC
CACATTACCATCGAAGTACATGATTATCACTGTGAAAGATGAGAATCCAG
CTCGTAGAGATAGCACAATTGGCTCTGCGATTCTATGGCTTGGCAACTTC
CATGGTGATCCCGTGCAGTTTTCAGCCCCAATCATGCACGGCGGTCTGAA
GAGAGGGTTGATTGTTGGACGATATGTGATTCGATGA

protein sequence of Gchil7527.t1

>Gchil7527.t1 ID=Gchil7527.t1|Name=Gchil7527.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=829bp
MMSAGGGIMMKPDRDTVSNPWQMAVCAPFGQISALDIQRLQLTIASRDTT
DRNAYHATVVVSGGGDHWRASASCAASSCHLAQPSSYIDMDGVDQPAARG
ALLWRLLSNPYCISATACGLLAVAVSFYLSRPRAQRLPPRLRRVRHALRQ
LSPSTFLFRISANGAGLLLCTQRRALFSLSKARGSGPSHIELDGAHYEQQ
LIGLVENLRLVKRGLFFERGRAVVLSDGQKQHVFEFLTRHAADTFLHFLA
HVREQSAPESLNVFLTTFNIGNHQPPDDLSPWLQQARSAHIIAVGVQECS
YTPSATGSAALQSGDASISQYPASDDSSTSTSDDISASNVSLTDKSSSFE
QRPLLKSELNVSLSSTPLPDHTQTSSSSAKEHWQSLLSVHFPDSQYTCIV
KHAGWDRCLTIFVQNSLFSHVSNIRVDTVNVGVAGVMGNKGAIGARFSVF
DTDFLIINSHLAAHHGEVARRNEDYSSISSGLSDLCDGDQAHVTADPIHY
TFWMGDLNYRINLDRDEVLKHVQNGSWKILHEADQLLQEMDAGRAFYDFS
EGKTNFAPTYRYERGSRQYSSAKMRVPSYCDRILFRSLPGCKLDLEQYQP
VDEIMTSDHSPVYASFRASMSRASAVRSFPSIISEFDEDAETEEAPLLSE
SRSLTLLSRSSAPTEDNRDHLQVVFSTLGATDIPDMDNGGRRIAVAKALR
IENHLVWKKHDELGEGHYADPYCVFRGPSVAELDEGQFRTDTITATQNPV
WNAEQIPEVDLVTNDHTTLPSKYMIITVKDENPARRDSTIGSAILWLGNF
HGDPVQFSAPIMHGGLKRGLIVGRYVIR*

mRNA from alignment at tig00000007_pilon:1764832..1767318+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7527.t1 ID=Gchil7527.t1|Name=Gchil7527.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2487bp|location=Sequence derived from alignment at tig00000007_pilon:1764832..1767318+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGTCAGCAGGGGGTGGCATCATGATGAAACCGGACCGGGACACCGT
GTCCAATCCATGGCAAATGGCTGTTTGCGCGCCATTTGGACAAATTTCAG
CGCTTGACATCCAACGCCTCCAGTTGACAATTGCCTCCCGCGACACCACA
GACCGCAACGCTTACCACGCAACAGTCGTGGTCAGTGGTGGTGGTGATCA
TTGGCGAGCGAGCGCCTCTTGTGCTGCTAGCAGTTGCCACCTCGCGCAAC
CATCGTCATACATCGATATGGACGGCGTCGACCAACCAGCCGCACGCGGC
GCACTACTATGGCGATTGCTCTCCAACCCGTACTGCATTTCGGCCACCGC
GTGCGGGCTTCTGGCCGTAGCCGTTTCATTCTACCTCTCGCGCCCACGCG
CACAGCGTTTGCCGCCGCGCCTTCGTCGGGTGCGCCACGCCCTGCGACAG
TTGTCTCCCTCGACATTTTTGTTTCGCATCTCCGCAAACGGCGCAGGGCT
TCTACTGTGTACACAGCGACGTGCACTGTTCAGCCTGAGCAAGGCGCGCG
GCAGTGGTCCTAGTCACATTGAACTCGATGGTGCACACTACGAACAACAG
CTCATTGGGCTTGTTGAGAATTTACGGCTTGTCAAGCGCGGCTTGTTCTT
TGAAAGAGGGCGCGCTGTTGTTTTGTCAGATGGTCAAAAGCAGCATGTGT
TTGAATTTCTCACGCGCCACGCTGCGGATACCTTTCTACACTTCCTGGCG
CATGTGCGAGAACAAAGTGCTCCAGAATCCCTCAATGTCTTTCTCACCAC
CTTCAACATTGGAAACCACCAGCCTCCTGACGATTTATCGCCCTGGCTTC
AGCAAGCCCGCTCGGCCCACATCATCGCCGTTGGAGTTCAAGAATGCTCA
TACACCCCATCGGCCACCGGCTCAGCAGCTCTACAGTCCGGTGATGCTTC
AATCTCACAATATCCAGCCTCAGATGATTCGTCAACCTCCACTAGCGATG
ATATTTCGGCCTCAAATGTTTCTCTTACGGACAAATCCTCATCATTTGAG
CAACGCCCTCTGCTGAAATCTGAATTAAATGTATCTCTCTCTTCAACCCC
CTTACCTGATCACACGCAAACCTCCTCGTCGTCTGCTAAGGAGCATTGGC
AGTCATTGCTCTCTGTCCACTTTCCGGATTCGCAGTACACTTGCATCGTC
AAACACGCTGGTTGGGATCGTTGCCTCACTATCTTTGTCCAGAATTCCTT
GTTCTCTCACGTCTCAAACATTCGGGTTGACACTGTGAACGTTGGCGTAG
CTGGAGTTATGGGCAACAAAGGCGCTATCGGTGCACGTTTCAGCGTCTTT
GACACCGATTTTCTCATCATCAACTCACATTTGGCTGCTCATCATGGAGA
AGTTGCTCGCCGCAACGAGGACTATTCTTCCATTTCTTCCGGGCTGAGCG
ATCTTTGCGACGGTGATCAGGCACATGTAACGGCGGATCCTATTCACTAC
ACTTTTTGGATGGGAGATCTCAACTATCGTATCAATCTTGACAGAGATGA
AGTCTTGAAGCATGTGCAGAACGGTTCTTGGAAGATACTACATGAAGCTG
ATCAACTTCTTCAGGAAATGGACGCTGGGAGAGCGTTTTATGATTTCTCG
GAAGGGAAAACGAATTTTGCTCCCACTTATCGGTACGAACGAGGCTCTCG
ACAGTACTCATCCGCAAAGATGCGGGTACCATCCTACTGCGACCGAATCC
TTTTTCGCTCACTTCCCGGATGCAAACTTGACCTTGAACAATACCAGCCT
GTTGACGAGATCATGACGTCGGACCACTCTCCCGTGTATGCGAGTTTTCG
TGCCTCAATGTCGCGTGCGAGTGCTGTGCGAAGTTTTCCAAGTATCATTT
CAGAGTTCGATGAAGACGCTGAAACAGAAGAGGCCCCACTTTTATCGGAA
TCGCGCTCTTTAACTTTGCTGTCGCGGAGCAGTGCACCGACTGAGGATAA
TCGAGACCACTTACAAGTCGTGTTTAGTACTCTTGGTGCCACAGATATTC
CAGACATGGACAATGGGGGGCGCCGCATAGCGGTGGCAAAAGCCCTGCGA
ATCGAAAACCATCTGGTTTGGAAGAAACATGACGAGCTTGGCGAAGGGCA
TTATGCTGATCCCTATTGTGTATTTCGCGGTCCTAGCGTTGCAGAGCTCG
ATGAAGGCCAGTTTCGGACAGATACGATAACCGCGACGCAAAATCCCGTG
TGGAACGCGGAACAGATTCCAGAAGTAGATTTAGTGACGAACGACCATAC
CACATTACCATCGAAGTACATGATTATCACTGTGAAAGATGAGAATCCAG
CTCGTAGAGATAGCACAATTGGCTCTGCGATTCTATGGCTTGGCAACTTC
CATGGTGATCCCGTGCAGTTTTCAGCCCCAATCATGCACGGCGGTCTGAA
GAGAGGGTTGATTGTTGGACGATATGTGATTCGATGA

Coding sequence (CDS) from alignment at tig00000007_pilon:1764832..1767318+

>Gchil7527.t1 ID=Gchil7527.t1|Name=Gchil7527.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2487bp|location=Sequence derived from alignment at tig00000007_pilon:1764832..1767318+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGTCAGCAGGGGGTGGCATCATGATGAAACCGGACCGGGACACCGT
GTCCAATCCATGGCAAATGGCTGTTTGCGCGCCATTTGGACAAATTTCAG
CGCTTGACATCCAACGCCTCCAGTTGACAATTGCCTCCCGCGACACCACA
GACCGCAACGCTTACCACGCAACAGTCGTGGTCAGTGGTGGTGGTGATCA
TTGGCGAGCGAGCGCCTCTTGTGCTGCTAGCAGTTGCCACCTCGCGCAAC
CATCGTCATACATCGATATGGACGGCGTCGACCAACCAGCCGCACGCGGC
GCACTACTATGGCGATTGCTCTCCAACCCGTACTGCATTTCGGCCACCGC
GTGCGGGCTTCTGGCCGTAGCCGTTTCATTCTACCTCTCGCGCCCACGCG
CACAGCGTTTGCCGCCGCGCCTTCGTCGGGTGCGCCACGCCCTGCGACAG
TTGTCTCCCTCGACATTTTTGTTTCGCATCTCCGCAAACGGCGCAGGGCT
TCTACTGTGTACACAGCGACGTGCACTGTTCAGCCTGAGCAAGGCGCGCG
GCAGTGGTCCTAGTCACATTGAACTCGATGGTGCACACTACGAACAACAG
CTCATTGGGCTTGTTGAGAATTTACGGCTTGTCAAGCGCGGCTTGTTCTT
TGAAAGAGGGCGCGCTGTTGTTTTGTCAGATGGTCAAAAGCAGCATGTGT
TTGAATTTCTCACGCGCCACGCTGCGGATACCTTTCTACACTTCCTGGCG
CATGTGCGAGAACAAAGTGCTCCAGAATCCCTCAATGTCTTTCTCACCAC
CTTCAACATTGGAAACCACCAGCCTCCTGACGATTTATCGCCCTGGCTTC
AGCAAGCCCGCTCGGCCCACATCATCGCCGTTGGAGTTCAAGAATGCTCA
TACACCCCATCGGCCACCGGCTCAGCAGCTCTACAGTCCGGTGATGCTTC
AATCTCACAATATCCAGCCTCAGATGATTCGTCAACCTCCACTAGCGATG
ATATTTCGGCCTCAAATGTTTCTCTTACGGACAAATCCTCATCATTTGAG
CAACGCCCTCTGCTGAAATCTGAATTAAATGTATCTCTCTCTTCAACCCC
CTTACCTGATCACACGCAAACCTCCTCGTCGTCTGCTAAGGAGCATTGGC
AGTCATTGCTCTCTGTCCACTTTCCGGATTCGCAGTACACTTGCATCGTC
AAACACGCTGGTTGGGATCGTTGCCTCACTATCTTTGTCCAGAATTCCTT
GTTCTCTCACGTCTCAAACATTCGGGTTGACACTGTGAACGTTGGCGTAG
CTGGAGTTATGGGCAACAAAGGCGCTATCGGTGCACGTTTCAGCGTCTTT
GACACCGATTTTCTCATCATCAACTCACATTTGGCTGCTCATCATGGAGA
AGTTGCTCGCCGCAACGAGGACTATTCTTCCATTTCTTCCGGGCTGAGCG
ATCTTTGCGACGGTGATCAGGCACATGTAACGGCGGATCCTATTCACTAC
ACTTTTTGGATGGGAGATCTCAACTATCGTATCAATCTTGACAGAGATGA
AGTCTTGAAGCATGTGCAGAACGGTTCTTGGAAGATACTACATGAAGCTG
ATCAACTTCTTCAGGAAATGGACGCTGGGAGAGCGTTTTATGATTTCTCG
GAAGGGAAAACGAATTTTGCTCCCACTTATCGGTACGAACGAGGCTCTCG
ACAGTACTCATCCGCAAAGATGCGGGTACCATCCTACTGCGACCGAATCC
TTTTTCGCTCACTTCCCGGATGCAAACTTGACCTTGAACAATACCAGCCT
GTTGACGAGATCATGACGTCGGACCACTCTCCCGTGTATGCGAGTTTTCG
TGCCTCAATGTCGCGTGCGAGTGCTGTGCGAAGTTTTCCAAGTATCATTT
CAGAGTTCGATGAAGACGCTGAAACAGAAGAGGCCCCACTTTTATCGGAA
TCGCGCTCTTTAACTTTGCTGTCGCGGAGCAGTGCACCGACTGAGGATAA
TCGAGACCACTTACAAGTCGTGTTTAGTACTCTTGGTGCCACAGATATTC
CAGACATGGACAATGGGGGGCGCCGCATAGCGGTGGCAAAAGCCCTGCGA
ATCGAAAACCATCTGGTTTGGAAGAAACATGACGAGCTTGGCGAAGGGCA
TTATGCTGATCCCTATTGTGTATTTCGCGGTCCTAGCGTTGCAGAGCTCG
ATGAAGGCCAGTTTCGGACAGATACGATAACCGCGACGCAAAATCCCGTG
TGGAACGCGGAACAGATTCCAGAAGTAGATTTAGTGACGAACGACCATAC
CACATTACCATCGAAGTACATGATTATCACTGTGAAAGATGAGAATCCAG
CTCGTAGAGATAGCACAATTGGCTCTGCGATTCTATGGCTTGGCAACTTC
CATGGTGATCCCGTGCAGTTTTCAGCCCCAATCATGCACGGCGGTCTGAA
GAGAGGGTTGATTGTTGGACGATATGTGATTCGATGA