Gchil8997.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8997.t1
Unique Name	Gchil8997.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	266

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:906727..907524 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	216432.CA2559_04060
PFAMs	Spond_N
Max annot lvl	976\|Bacteroidetes
Evalue	3.8e-10
EggNOG OGs	KOG3539@1\|root,32TPV@2\|Bacteria,4NMI6@976\|Bacteroidetes,1I1I5@117743\|Flavobacteriia
Description	Spondin_N
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8997	Gchil8997	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 906727..907524 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8997.t1.start1	Gchil8997.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 906727..906729 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8997.t1.CDS1	Gchil8997.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 906727..907524 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8997.t1.exon1	Gchil8997.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 906727..907524 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8997.t1.stop1	Gchil8997.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 907522..907524 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8997.t1	Gchil8997.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 906727..907524 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:906727..907524+
coding sequence from alignment at tig00004370_pilon:906727..907524+

mRNA sequence

>Gchil8997.t1 ID=Gchil8997.t1|Name=Gchil8997.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=266bp
MRFHPCLLSALLLVLLPAVARAACSGEQSYVLSLKMSFTQNINPLIPPRG
KARIPVVVAVAHKPNYRLFEGAKKLSDAAAEVASAGKADEIKHQFDLLRD
TGDVYSFSILHDVPIDDVSQLQLKVKDSASKISLMAQLSPSPSWFVGIDS
LELCEKSTFIVERQNIAVKNYNSGLDGSREFDLSNPYDEGETLPVEPLTA
VETDAKLASLSIEQGTLGVSFWKIILGALAAAAIVAAIVCIVIPLWRRRR
KATPLPLTTQEGTEW*

spliced messenger RNA

>Gchil8997.t1 ID=Gchil8997.t1|Name=Gchil8997.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00004370_pilon:906727..907524+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTTCCATCCCTGCCTCCTGTCCGCTCTCCTGCTCGTGCTGCTCCC
CGCCGTGGCACGCGCCGCCTGTTCCGGTGAACAGTCGTACGTTCTTTCCC
TCAAGATGTCCTTCACGCAAAATATCAATCCGTTGATCCCACCCCGTGGC
AAGGCCCGTATTCCCGTCGTCGTTGCCGTCGCGCACAAACCCAACTATCG
TCTGTTTGAAGGCGCCAAAAAACTGAGCGATGCCGCAGCAGAGGTGGCAT
CGGCGGGAAAGGCTGATGAAATCAAACACCAGTTTGATCTCCTGCGTGAT
ACCGGTGATGTTTACTCTTTTAGTATCCTCCATGACGTTCCAATCGATGA
TGTGTCTCAGCTGCAGCTAAAAGTTAAAGATTCCGCATCCAAAATATCGC
TCATGGCCCAGTTGAGTCCTTCTCCTTCTTGGTTTGTTGGTATTGATTCC
TTGGAATTGTGTGAAAAGTCCACCTTCATCGTCGAGCGTCAAAACATCGC
AGTCAAGAATTACAACTCGGGGCTCGACGGTAGCCGAGAGTTTGATTTGT
CTAATCCCTACGACGAGGGTGAAACTCTTCCTGTTGAGCCTCTAACGGCT
GTGGAGACTGATGCCAAGTTGGCTTCGCTGTCCATTGAGCAGGGTACCCT
TGGCGTTAGTTTTTGGAAGATTATTTTGGGAGCTCTTGCAGCTGCAGCTA
TCGTTGCCGCCATTGTCTGCATCGTTATTCCATTGTGGCGTCGGAGAAGG
AAGGCTACTCCTCTTCCTCTTACCACGCAGGAAGGAACGGAATGGTAA

protein sequence of Gchil8997.t1

>Gchil8997.t1 ID=Gchil8997.t1|Name=Gchil8997.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=266bp
MRFHPCLLSALLLVLLPAVARAACSGEQSYVLSLKMSFTQNINPLIPPRG
KARIPVVVAVAHKPNYRLFEGAKKLSDAAAEVASAGKADEIKHQFDLLRD
TGDVYSFSILHDVPIDDVSQLQLKVKDSASKISLMAQLSPSPSWFVGIDS
LELCEKSTFIVERQNIAVKNYNSGLDGSREFDLSNPYDEGETLPVEPLTA
VETDAKLASLSIEQGTLGVSFWKIILGALAAAAIVAAIVCIVIPLWRRRR
KATPLPLTTQEGTEW*

mRNA from alignment at tig00004370_pilon:906727..907524+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8997.t1 ID=Gchil8997.t1|Name=Gchil8997.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00004370_pilon:906727..907524+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTTTCCATCCCTGCCTCCTGTCCGCTCTCCTGCTCGTGCTGCTCCC
CGCCGTGGCACGCGCCGCCTGTTCCGGTGAACAGTCGTACGTTCTTTCCC
TCAAGATGTCCTTCACGCAAAATATCAATCCGTTGATCCCACCCCGTGGC
AAGGCCCGTATTCCCGTCGTCGTTGCCGTCGCGCACAAACCCAACTATCG
TCTGTTTGAAGGCGCCAAAAAACTGAGCGATGCCGCAGCAGAGGTGGCAT
CGGCGGGAAAGGCTGATGAAATCAAACACCAGTTTGATCTCCTGCGTGAT
ACCGGTGATGTTTACTCTTTTAGTATCCTCCATGACGTTCCAATCGATGA
TGTGTCTCAGCTGCAGCTAAAAGTTAAAGATTCCGCATCCAAAATATCGC
TCATGGCCCAGTTGAGTCCTTCTCCTTCTTGGTTTGTTGGTATTGATTCC
TTGGAATTGTGTGAAAAGTCCACCTTCATCGTCGAGCGTCAAAACATCGC
AGTCAAGAATTACAACTCGGGGCTCGACGGTAGCCGAGAGTTTGATTTGT
CTAATCCCTACGACGAGGGTGAAACTCTTCCTGTTGAGCCTCTAACGGCT
GTGGAGACTGATGCCAAGTTGGCTTCGCTGTCCATTGAGCAGGGTACCCT
TGGCGTTAGTTTTTGGAAGATTATTTTGGGAGCTCTTGCAGCTGCAGCTA
TCGTTGCCGCCATTGTCTGCATCGTTATTCCATTGTGGCGTCGGAGAAGG
AAGGCTACTCCTCTTCCTCTTACCACGCAGGAAGGAACGGAATGGTAA

Coding sequence (CDS) from alignment at tig00004370_pilon:906727..907524+

>Gchil8997.t1 ID=Gchil8997.t1|Name=Gchil8997.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=798bp|location=Sequence derived from alignment at tig00004370_pilon:906727..907524+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTTTCCATCCCTGCCTCCTGTCCGCTCTCCTGCTCGTGCTGCTCCC
CGCCGTGGCACGCGCCGCCTGTTCCGGTGAACAGTCGTACGTTCTTTCCC
TCAAGATGTCCTTCACGCAAAATATCAATCCGTTGATCCCACCCCGTGGC
AAGGCCCGTATTCCCGTCGTCGTTGCCGTCGCGCACAAACCCAACTATCG
TCTGTTTGAAGGCGCCAAAAAACTGAGCGATGCCGCAGCAGAGGTGGCAT
CGGCGGGAAAGGCTGATGAAATCAAACACCAGTTTGATCTCCTGCGTGAT
ACCGGTGATGTTTACTCTTTTAGTATCCTCCATGACGTTCCAATCGATGA
TGTGTCTCAGCTGCAGCTAAAAGTTAAAGATTCCGCATCCAAAATATCGC
TCATGGCCCAGTTGAGTCCTTCTCCTTCTTGGTTTGTTGGTATTGATTCC
TTGGAATTGTGTGAAAAGTCCACCTTCATCGTCGAGCGTCAAAACATCGC
AGTCAAGAATTACAACTCGGGGCTCGACGGTAGCCGAGAGTTTGATTTGT
CTAATCCCTACGACGAGGGTGAAACTCTTCCTGTTGAGCCTCTAACGGCT
GTGGAGACTGATGCCAAGTTGGCTTCGCTGTCCATTGAGCAGGGTACCCT
TGGCGTTAGTTTTTGGAAGATTATTTTGGGAGCTCTTGCAGCTGCAGCTA
TCGTTGCCGCCATTGTCTGCATCGTTATTCCATTGTGGCGTCGGAGAAGG
AAGGCTACTCCTCTTCCTCTTACCACGCAGGAAGGAACGGAATGGTAA