Gchil9246.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil9246.t1
Unique NameGchil9246.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length509
Homology
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BLAST of Gchil9246.t1 vs. uniprot
Match: A0A2V3IK91_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IK91_9FLOR)

HSP 1 Score: 693 bits (1788), Expect = 3.980e-247
Identity = 368/483 (76.19%), Postives = 392/483 (81.16%), Query Frame = 0 
Query:   51 LDAPPAITSSSVSSPSAPHSDGPDEVDELLDGIDRVRIDDLWQTPRHLDFTPAPAPFRAGLFAPPRKDGIAAIAAPHHNXXXXXXXXXXXXXXTSQPACQSHSQPPPHLSAAHDFPRMFKVYPCRTSDHCLAAGTAPDCFYYHSPNTDRRRPNVSMYKPHMCRFIDDIAGCRKADRCPFSHNDFERRYHPDRFGKETCRDYLRGDCPRRYCTFRHEVSSNVQVSLLHMQQMSDKELLQLVLKIPEPQGRALCEKLLRRFGHAKKHSGWRLQGFDPRGRDDQKIKFVTTRVEHVKRALKGAGEKKWASTLKTSSLRDMMSGVRKVAEEVRERSRADERYGASATDGGSQEVHRLIRAIFSNTNWSCHSQEGDNPFLVTPENQNDAMTALEKLVHIVVMC---NQDKQAALSNVENNGGISNKTNSRGVVAADRKKEG----------------------AVDDQPHNVVSTLWACPSSLGQLTA 508
            +D PPAITSSSVSSPSAPHSDGPDEVDELLDGIDRVRIDDLWQTPRHLDF P PAPFRAGLFAPPRKDGIAAIAAP + XXXXXXXXXXXXXX             P     HDFPR+FKVYPCRT + CLAAGTAPDCF+YHS NTDRRR NVS+YKPHMCRFIDD AGCRKADRCPFSHNDFERRYHPDRFGKETCRDYLRGDCPRRYCTFRHEVS++VQ+SL HM QMSDKELLQLVLK+PE QGRALCEKLLRRFGHAKKHSGW+LQGFDPRGR++QK++FVT RVE VKR+LK AGEKKWA TLKTSSLRDMMSGVRKVAEEVRER RADERYGAS +DGGSQEV RLIRAIFSNTNWSCHSQEGDNPFLVTPENQNDAM+ALEKLVHIVV     N    AA +N  +   + N  +S   +    KK G                      A   Q H+VVSTLWACPSSLG LTA
Sbjct:    1 MDPPPAITSSSVSSPSAPHSDGPDEVDELLDGIDRVRIDDLWQTPRHLDFIPTPAPFRAGLFAPPRKDGIAAIAAPTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXP---TTHDFPRLFKVYPCRTREQCLAAGTAPDCFFYHSTNTDRRRLNVSLYKPHMCRFIDDAAGCRKADRCPFSHNDFERRYHPDRFGKETCRDYLRGDCPRRYCTFRHEVSTHVQMSLAHMHQMSDKELLQLVLKMPEAQGRALCEKLLRRFGHAKKHSGWKLQGFDPRGREEQKVRFVTARVEQVKRSLKAAGEKKWACTLKTSSLRDMMSGVRKVAEEVRERCRADERYGASGSDGGSQEVQRLIRAIFSNTNWSCHSQEGDNPFLVTPENQNDAMSALEKLVHIVVRSHSNNDSNHAAGANTNDENVVKNANDSNSNMERSTKKVGVTXXXXXXXXXXXRSDGWSKAAAAQAQRHDVVSTLWACPSSLGHLTA 480
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BLAST of Gchil9246.t1 vs. uniprot
Match: A0A1X6NIT3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NIT3_PORUM)

HSP 1 Score: 158 bits (400), Expect = 3.110e-41
Identity = 95/250 (38.00%), Postives = 134/250 (53.60%), Query Frame = 0 
Query:  219 AGCRKADRCPFSHNDFERRYHPDRFGKETCRDYLRGDCPRRYCTFRHEVSSNVQVSLLHMQQMSDKELLQLVLKIPEPQGRALCEKLLRRFGHAKKHSGWRLQGFDPRGRDDQKIKFVTTRVEHVKRALKGAGEKKWASTLKTSSLRDMMSGVRKVAEEVRERSRADERYGASATDGG------------------------SQEVHRLIRAIFSNTNWSCHSQE---GDNPFLVTPENQNDAMTALEKL 441
              CR  D C  +HN +E R+HP R  + TCRD+++G C R YC++ HEV   V   L   + + ++E +Q VL++PE    ++ +KL RR   +K+++GW L+G   R  DD     + TRV  VK  L+ AG  K AS LKT++LRDMM+ VRKVAEEVRE  R                                     S  +  L+R IF+NTNWS H++E    D PF V+  NQ+DA+  LE++
Sbjct:    4 GACRFGDGCHHAHNRWEVRFHPSRVHQTTCRDWIKGACARSYCSYVHEVEPKVSSFLTLWESLDEREQVQAVLRMPEAMAASMMQKLQRRAAGSKRNNGWVLEGMTRRP-DDPVFVGLATRVGIVKARLRSAGHTKLASLLKTTTLRDMMNSVRKVAEEVRESGRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSGSMQSLVRGIFTNTNWSMHAEEHGESDTPFRVSGANQSDAVAKLERV 252
The following BLAST results are available for this feature:
BLAST of Gchil9246.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IK91_9FLOR3.980e-24776.19Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6NIT3_PORUM3.110e-4138.00Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 206..233
e-value: 1.4
score: 15.2
coord: 242..267
e-value: 0.58
score: 18.2
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 242..268
score: 10.877837
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 206..234
score: 10.305102
NoneNo IPR availableGENE3D4.10.1000.10coord: 202..278
e-value: 6.0E-8
score: 34.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:2743926..2745452 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9246.t1Gchil9246.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004370_pilon 2743926..2745452 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil9246.t1 ID=Gchil9246.t1|Name=Gchil9246.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=509bp
MTTTQSNPRTIDLKQASAPPSVMPPSRHPSAWPASPPIPRRVPPPITVPT
LDAPPAITSSSVSSPSAPHSDGPDEVDELLDGIDRVRIDDLWQTPRHLDF
TPAPAPFRAGLFAPPRKDGIAAIAAPHHNHVNHAHHHSHHPSHTSQPACQ
SHSQPPPHLSAAHDFPRMFKVYPCRTSDHCLAAGTAPDCFYYHSPNTDRR
RPNVSMYKPHMCRFIDDIAGCRKADRCPFSHNDFERRYHPDRFGKETCRD
YLRGDCPRRYCTFRHEVSSNVQVSLLHMQQMSDKELLQLVLKIPEPQGRA
LCEKLLRRFGHAKKHSGWRLQGFDPRGRDDQKIKFVTTRVEHVKRALKGA
GEKKWASTLKTSSLRDMMSGVRKVAEEVRERSRADERYGASATDGGSQEV
HRLIRAIFSNTNWSCHSQEGDNPFLVTPENQNDAMTALEKLVHIVVMCNQ
DKQAALSNVENNGGISNKTNSRGVVAADRKKEGAVDDQPHNVVSTLWACP
SSLGQLTA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH