Gchil9246.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9246.t1
Unique NameGchil9246.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length509
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:2743926..2745452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005647514.1
PFAMszf-CCCH
Max annot lvl2759|Eukaryota
KEGG koko:K07560
Evalue3.5e-08
EggNOG OGsKOG1595@1|root,KOG1595@2759|Eukaryota
DescriptionDNA binding
COG categoryK
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9246Gchil9246Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 2743926..2745452 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9246.t1.start1Gchil9246.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 2743926..2743928 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9246.t1.CDS1Gchil9246.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 2743926..2745452 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9246.t1.exon1Gchil9246.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 2743926..2745452 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9246.t1.stop1Gchil9246.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 2745450..2745452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9246.t1Gchil9246.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 2743926..2745452 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9246.t1 ID=Gchil9246.t1|Name=Gchil9246.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=509bp
MTTTQSNPRTIDLKQASAPPSVMPPSRHPSAWPASPPIPRRVPPPITVPT
LDAPPAITSSSVSSPSAPHSDGPDEVDELLDGIDRVRIDDLWQTPRHLDF
TPAPAPFRAGLFAPPRKDGIAAIAAPHHNHVNHAHHHSHHPSHTSQPACQ
SHSQPPPHLSAAHDFPRMFKVYPCRTSDHCLAAGTAPDCFYYHSPNTDRR
RPNVSMYKPHMCRFIDDIAGCRKADRCPFSHNDFERRYHPDRFGKETCRD
YLRGDCPRRYCTFRHEVSSNVQVSLLHMQQMSDKELLQLVLKIPEPQGRA
LCEKLLRRFGHAKKHSGWRLQGFDPRGRDDQKIKFVTTRVEHVKRALKGA
GEKKWASTLKTSSLRDMMSGVRKVAEEVRERSRADERYGASATDGGSQEV
HRLIRAIFSNTNWSCHSQEGDNPFLVTPENQNDAMTALEKLVHIVVMCNQ
DKQAALSNVENNGGISNKTNSRGVVAADRKKEGAVDDQPHNVVSTLWACP
SSLGQLTA*
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spliced messenger RNA

>Gchil9246.t1 ID=Gchil9246.t1|Name=Gchil9246.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00004370_pilon:2743926..2745452+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACAACCCAGTCCAACCCCCGCACGATCGATCTCAAACAAGCGTC
CGCCCCCCCATCCGTCATGCCGCCCTCCCGCCACCCATCCGCATGGCCCG
CCTCCCCCCCCATCCCCCGTCGCGTCCCGCCTCCCATCACCGTCCCCACT
CTCGACGCACCCCCCGCAATCACCTCCTCCTCCGTGTCAAGCCCGTCTGC
CCCCCACTCCGACGGCCCCGACGAAGTGGACGAGCTCCTCGATGGCATCG
ATCGCGTCCGCATCGACGACCTCTGGCAGACTCCCCGTCACCTCGACTTC
ACCCCCGCTCCCGCCCCCTTCCGCGCCGGCCTCTTCGCTCCGCCCCGCAA
GGACGGCATCGCTGCCATCGCTGCTCCGCACCACAACCATGTCAACCATG
CGCACCACCATTCGCACCACCCTTCCCACACGTCTCAGCCTGCTTGTCAG
TCCCACTCTCAACCGCCGCCGCACCTATCCGCCGCCCACGACTTTCCTCG
CATGTTCAAGGTGTATCCCTGCCGCACAAGCGACCACTGTCTTGCTGCAG
GCACGGCTCCGGACTGTTTTTACTACCATTCGCCCAACACCGACCGTCGT
CGTCCTAACGTGTCCATGTACAAGCCGCACATGTGCCGCTTCATCGATGA
CATTGCCGGTTGTCGCAAGGCTGACCGCTGCCCCTTCTCACACAACGACT
TTGAGCGTCGCTACCACCCCGACCGCTTTGGAAAGGAGACTTGTCGTGAC
TATCTTCGCGGCGACTGCCCGCGTCGCTACTGCACTTTCCGCCACGAGGT
GTCGTCCAACGTGCAGGTGTCACTGCTGCACATGCAACAAATGAGCGACA
AGGAGCTATTGCAACTCGTGCTCAAGATACCCGAGCCGCAGGGACGCGCT
CTGTGCGAAAAGTTATTACGCCGCTTCGGTCATGCCAAGAAACATTCCGG
CTGGCGCCTACAGGGCTTCGACCCTCGTGGCCGCGACGATCAGAAGATCA
AGTTTGTCACGACGCGCGTGGAACACGTGAAGCGTGCGCTCAAGGGTGCG
GGCGAGAAAAAGTGGGCCTCTACGCTCAAGACGTCTAGCCTGCGCGACAT
GATGAGCGGCGTGCGCAAGGTGGCTGAGGAGGTTCGTGAGCGCTCCCGCG
CCGATGAGCGTTACGGTGCTTCGGCTACCGACGGTGGCTCTCAGGAGGTG
CACCGACTGATTCGCGCCATTTTCTCCAACACCAATTGGAGCTGTCACTC
GCAAGAGGGCGATAATCCGTTTCTGGTGACACCGGAGAATCAGAATGATG
CTATGACAGCGCTGGAGAAACTGGTGCATATCGTTGTGATGTGCAACCAG
GACAAGCAAGCTGCATTGAGTAATGTGGAAAATAATGGCGGAATTAGCAA
CAAGACTAACAGCAGGGGTGTAGTTGCTGCGGACCGAAAAAAAGAGGGCG
CTGTTGACGACCAGCCGCACAACGTTGTGTCTACATTGTGGGCGTGCCCG
TCGTCGCTGGGTCAGCTCACTGCATGA
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protein sequence of Gchil9246.t1

>Gchil9246.t1 ID=Gchil9246.t1|Name=Gchil9246.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=509bp
MTTTQSNPRTIDLKQASAPPSVMPPSRHPSAWPASPPIPRRVPPPITVPT
LDAPPAITSSSVSSPSAPHSDGPDEVDELLDGIDRVRIDDLWQTPRHLDF
TPAPAPFRAGLFAPPRKDGIAAIAAPHHNHVNHAHHHSHHPSHTSQPACQ
SHSQPPPHLSAAHDFPRMFKVYPCRTSDHCLAAGTAPDCFYYHSPNTDRR
RPNVSMYKPHMCRFIDDIAGCRKADRCPFSHNDFERRYHPDRFGKETCRD
YLRGDCPRRYCTFRHEVSSNVQVSLLHMQQMSDKELLQLVLKIPEPQGRA
LCEKLLRRFGHAKKHSGWRLQGFDPRGRDDQKIKFVTTRVEHVKRALKGA
GEKKWASTLKTSSLRDMMSGVRKVAEEVRERSRADERYGASATDGGSQEV
HRLIRAIFSNTNWSCHSQEGDNPFLVTPENQNDAMTALEKLVHIVVMCNQ
DKQAALSNVENNGGISNKTNSRGVVAADRKKEGAVDDQPHNVVSTLWACP
SSLGQLTA*
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mRNA from alignment at tig00004370_pilon:2743926..2745452+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9246.t1 ID=Gchil9246.t1|Name=Gchil9246.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00004370_pilon:2743926..2745452+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCACAACCCAGTCCAACCCCCGCACGATCGATCTCAAACAAGCGTC
CGCCCCCCCATCCGTCATGCCGCCCTCCCGCCACCCATCCGCATGGCCCG
CCTCCCCCCCCATCCCCCGTCGCGTCCCGCCTCCCATCACCGTCCCCACT
CTCGACGCACCCCCCGCAATCACCTCCTCCTCCGTGTCAAGCCCGTCTGC
CCCCCACTCCGACGGCCCCGACGAAGTGGACGAGCTCCTCGATGGCATCG
ATCGCGTCCGCATCGACGACCTCTGGCAGACTCCCCGTCACCTCGACTTC
ACCCCCGCTCCCGCCCCCTTCCGCGCCGGCCTCTTCGCTCCGCCCCGCAA
GGACGGCATCGCTGCCATCGCTGCTCCGCACCACAACCATGTCAACCATG
CGCACCACCATTCGCACCACCCTTCCCACACGTCTCAGCCTGCTTGTCAG
TCCCACTCTCAACCGCCGCCGCACCTATCCGCCGCCCACGACTTTCCTCG
CATGTTCAAGGTGTATCCCTGCCGCACAAGCGACCACTGTCTTGCTGCAG
GCACGGCTCCGGACTGTTTTTACTACCATTCGCCCAACACCGACCGTCGT
CGTCCTAACGTGTCCATGTACAAGCCGCACATGTGCCGCTTCATCGATGA
CATTGCCGGTTGTCGCAAGGCTGACCGCTGCCCCTTCTCACACAACGACT
TTGAGCGTCGCTACCACCCCGACCGCTTTGGAAAGGAGACTTGTCGTGAC
TATCTTCGCGGCGACTGCCCGCGTCGCTACTGCACTTTCCGCCACGAGGT
GTCGTCCAACGTGCAGGTGTCACTGCTGCACATGCAACAAATGAGCGACA
AGGAGCTATTGCAACTCGTGCTCAAGATACCCGAGCCGCAGGGACGCGCT
CTGTGCGAAAAGTTATTACGCCGCTTCGGTCATGCCAAGAAACATTCCGG
CTGGCGCCTACAGGGCTTCGACCCTCGTGGCCGCGACGATCAGAAGATCA
AGTTTGTCACGACGCGCGTGGAACACGTGAAGCGTGCGCTCAAGGGTGCG
GGCGAGAAAAAGTGGGCCTCTACGCTCAAGACGTCTAGCCTGCGCGACAT
GATGAGCGGCGTGCGCAAGGTGGCTGAGGAGGTTCGTGAGCGCTCCCGCG
CCGATGAGCGTTACGGTGCTTCGGCTACCGACGGTGGCTCTCAGGAGGTG
CACCGACTGATTCGCGCCATTTTCTCCAACACCAATTGGAGCTGTCACTC
GCAAGAGGGCGATAATCCGTTTCTGGTGACACCGGAGAATCAGAATGATG
CTATGACAGCGCTGGAGAAACTGGTGCATATCGTTGTGATGTGCAACCAG
GACAAGCAAGCTGCATTGAGTAATGTGGAAAATAATGGCGGAATTAGCAA
CAAGACTAACAGCAGGGGTGTAGTTGCTGCGGACCGAAAAAAAGAGGGCG
CTGTTGACGACCAGCCGCACAACGTTGTGTCTACATTGTGGGCGTGCCCG
TCGTCGCTGGGTCAGCTCACTGCATGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:2743926..2745452+

>Gchil9246.t1 ID=Gchil9246.t1|Name=Gchil9246.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1527bp|location=Sequence derived from alignment at tig00004370_pilon:2743926..2745452+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCACAACCCAGTCCAACCCCCGCACGATCGATCTCAAACAAGCGTC
CGCCCCCCCATCCGTCATGCCGCCCTCCCGCCACCCATCCGCATGGCCCG
CCTCCCCCCCCATCCCCCGTCGCGTCCCGCCTCCCATCACCGTCCCCACT
CTCGACGCACCCCCCGCAATCACCTCCTCCTCCGTGTCAAGCCCGTCTGC
CCCCCACTCCGACGGCCCCGACGAAGTGGACGAGCTCCTCGATGGCATCG
ATCGCGTCCGCATCGACGACCTCTGGCAGACTCCCCGTCACCTCGACTTC
ACCCCCGCTCCCGCCCCCTTCCGCGCCGGCCTCTTCGCTCCGCCCCGCAA
GGACGGCATCGCTGCCATCGCTGCTCCGCACCACAACCATGTCAACCATG
CGCACCACCATTCGCACCACCCTTCCCACACGTCTCAGCCTGCTTGTCAG
TCCCACTCTCAACCGCCGCCGCACCTATCCGCCGCCCACGACTTTCCTCG
CATGTTCAAGGTGTATCCCTGCCGCACAAGCGACCACTGTCTTGCTGCAG
GCACGGCTCCGGACTGTTTTTACTACCATTCGCCCAACACCGACCGTCGT
CGTCCTAACGTGTCCATGTACAAGCCGCACATGTGCCGCTTCATCGATGA
CATTGCCGGTTGTCGCAAGGCTGACCGCTGCCCCTTCTCACACAACGACT
TTGAGCGTCGCTACCACCCCGACCGCTTTGGAAAGGAGACTTGTCGTGAC
TATCTTCGCGGCGACTGCCCGCGTCGCTACTGCACTTTCCGCCACGAGGT
GTCGTCCAACGTGCAGGTGTCACTGCTGCACATGCAACAAATGAGCGACA
AGGAGCTATTGCAACTCGTGCTCAAGATACCCGAGCCGCAGGGACGCGCT
CTGTGCGAAAAGTTATTACGCCGCTTCGGTCATGCCAAGAAACATTCCGG
CTGGCGCCTACAGGGCTTCGACCCTCGTGGCCGCGACGATCAGAAGATCA
AGTTTGTCACGACGCGCGTGGAACACGTGAAGCGTGCGCTCAAGGGTGCG
GGCGAGAAAAAGTGGGCCTCTACGCTCAAGACGTCTAGCCTGCGCGACAT
GATGAGCGGCGTGCGCAAGGTGGCTGAGGAGGTTCGTGAGCGCTCCCGCG
CCGATGAGCGTTACGGTGCTTCGGCTACCGACGGTGGCTCTCAGGAGGTG
CACCGACTGATTCGCGCCATTTTCTCCAACACCAATTGGAGCTGTCACTC
GCAAGAGGGCGATAATCCGTTTCTGGTGACACCGGAGAATCAGAATGATG
CTATGACAGCGCTGGAGAAACTGGTGCATATCGTTGTGATGTGCAACCAG
GACAAGCAAGCTGCATTGAGTAATGTGGAAAATAATGGCGGAATTAGCAA
CAAGACTAACAGCAGGGGTGTAGTTGCTGCGGACCGAAAAAAAGAGGGCG
CTGTTGACGACCAGCCGCACAACGTTGTGTCTACATTGTGGGCGTGCCCG
TCGTCGCTGGGTCAGCTCACTGCATGA
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