Gchil8913.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8913.t1
Unique NameGchil8913.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length95
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:106524..106898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10228.TriadP23866
Preferred nameLSM3
PFAMsLSM
Max annot lvl33208|Metazoa
KEGG koko:K12622
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
GOsGO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005688,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0017069,GO:0017070,GO:0019222,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030629,GO:0031974,GO:0031981,GO:0032991,GO:0033962,GO:0034622,GO:0034641,GO:0034655,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1990726,GO:1990904
Evalue1.33e-43
EggNOG OGsKOG3460@1|root,KOG3460@2759|Eukaryota,3A5WN@33154|Opisthokonta,3BRF9@33208|Metazoa
DescriptionU6 snRNA-associated Sm-like protein
COG categoryA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8913Gchil8913Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 106524..106898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8913.t1Gchil8913.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 106524..106898 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8913.t1.stop1Gchil8913.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 106524..106526 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8913.t1.CDS1Gchil8913.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 106524..106700 -
Gchil8913.t1.CDS2Gchil8913.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 106791..106898 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8913.t1.exon1Gchil8913.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 106524..106700 -
Gchil8913.t1.exon2Gchil8913.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 106791..106898 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8913.t1.intron1Gchil8913.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 106701..106790 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8913.t1.start1Gchil8913.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 106896..106898 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8913.t1 ID=Gchil8913.t1|Name=Gchil8913.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=95bp
MTAGTVEQPLDLVRLSLDETIRVKMRGNRELRGKLHAFDQHLNMILGDVE
ETVITTDVDPETFEELLNTSKRLIPMLFVRGDCVILISPPLRTS*
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spliced messenger RNA

>Gchil8913.t1 ID=Gchil8913.t1|Name=Gchil8913.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=285bp|location=Sequence derived from alignment at tig00004370_pilon:106524..106898- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCTGGGACTGTGGAGCAGCCGCTTGATCTTGTTAGACTTTCTCT
AGACGAAACGATCAGAGTTAAAATGCGAGGCAATCGGGAGTTGCGCGGAA
AACTGCACGCATTTGATCAACATCTCAACATGATTCTGGGAGATGTGGAA
GAGACGGTTATTACTACCGATGTAGATCCCGAAACATTCGAAGAGCTTTT
GAACACCTCCAAGCGTCTCATTCCGATGTTGTTTGTTCGCGGAGATTGCG
TTATTCTGATATCACCACCGCTGCGAACATCTTGA
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protein sequence of Gchil8913.t1

>Gchil8913.t1 ID=Gchil8913.t1|Name=Gchil8913.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=95bp
MTAGTVEQPLDLVRLSLDETIRVKMRGNRELRGKLHAFDQHLNMILGDVE
ETVITTDVDPETFEELLNTSKRLIPMLFVRGDCVILISPPLRTS*
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mRNA from alignment at tig00004370_pilon:106524..106898-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8913.t1 ID=Gchil8913.t1|Name=Gchil8913.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=375bp|location=Sequence derived from alignment at tig00004370_pilon:106524..106898- (Gracilaria chilensis NLEC103_M9 male)
ATGACTGCTGGGACTGTGGAGCAGCCGCTTGATCTTGTTAGACTTTCTCT
AGACGAAACGATCAGAGTTAAAATGCGAGGCAATCGGGAGTTGCGCGGAA
AACTGCACGTAAGTAAGCTGAGGGGCTTTCGCACAGCCTTTTCCCTGTCC
AACAGGATGAGCAGGAGCTGACTAATATTTTCTTCAAAAAATGAGCAGGC
ATTTGATCAACATCTCAACATGATTCTGGGAGATGTGGAAGAGACGGTTA
TTACTACCGATGTAGATCCCGAAACATTCGAAGAGCTTTTGAACACCTCC
AAGCGTCTCATTCCGATGTTGTTTGTTCGCGGAGATTGCGTTATTCTGAT
ATCACCACCGCTGCGAACATCTTGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:106524..106898-

>Gchil8913.t1 ID=Gchil8913.t1|Name=Gchil8913.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=285bp|location=Sequence derived from alignment at tig00004370_pilon:106524..106898- (Gracilaria chilensis NLEC103_M9 male)
ATGACTGCTGGGACTGTGGAGCAGCCGCTTGATCTTGTTAGACTTTCTCT
AGACGAAACGATCAGAGTTAAAATGCGAGGCAATCGGGAGTTGCGCGGAA
AACTGCACGCATTTGATCAACATCTCAACATGATTCTGGGAGATGTGGAA
GAGACGGTTATTACTACCGATGTAGATCCCGAAACATTCGAAGAGCTTTT
GAACACCTCCAAGCGTCTCATTCCGATGTTGTTTGTTCGCGGAGATTGCG
TTATTCTGATATCACCACCGCTGCGAACATCTTGA
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