Gchil8913.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8913.t1
Unique NameGchil8913.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length95
Homology
BLAST of Gchil8913.t1 vs. uniprot
Match: A0A2V3IK58_9FLOR (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IK58_9FLOR)

HSP 1 Score: 176 bits (445), Expect = 1.230e-55
Identity = 88/94 (93.62%), Postives = 90/94 (95.74%), Query Frame = 0
Query:    1 MTAGTVEQPLDLVRLSLDETIRVKMRGNRELRGKLHAFDQHLNMILGDVEETVITTDVDPETFEELLNTSKRLIPMLFVRGDCVILISPPLRTS 94
            MTA TVEQPLDLVRLSLDETIRVKMRG+RELRGKLHAFDQHLNMILGDVEET+ TTDVDPETFEELL TSKR IPMLFVRGDCVILISPPLRTS
Sbjct:    1 MTAQTVEQPLDLVRLSLDETIRVKMRGDRELRGKLHAFDQHLNMILGDVEETITTTDVDPETFEELLKTSKRHIPMLFVRGDCVILISPPLRTS 94          
BLAST of Gchil8913.t1 vs. uniprot
Match: B3RUU9_TRIAD (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Trichoplax TaxID=10227 RepID=B3RUU9_TRIAD)

HSP 1 Score: 144 bits (363), Expect = 5.360e-43
Identity = 69/93 (74.19%), Postives = 80/93 (86.02%), Query Frame = 0
Query:    2 TAGTVEQPLDLVRLSLDETIRVKMRGNRELRGKLHAFDQHLNMILGDVEETVITTDVDPETFEELLNTSKRLIPMLFVRGDCVILISPPLRTS 94
            T+ TVE+PLDLVRLSLDE I VKMR +RELRG+LHA+DQHLNM+LGDVEET+ T ++D ETFEEL  TSKR IPML+VRGD VIL+SPPLR  
Sbjct:   10 TSNTVEEPLDLVRLSLDERILVKMRNDRELRGRLHAYDQHLNMVLGDVEETITTVEIDDETFEELYKTSKRQIPMLYVRGDGVILVSPPLRVG 102          
BLAST of Gchil8913.t1 vs. uniprot
Match: A0A0M0JVC1_9EUKA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVC1_9EUKA)

HSP 1 Score: 141 bits (356), Expect = 4.620e-42
Identity = 69/94 (73.40%), Postives = 80/94 (85.11%), Query Frame = 0
Query:    1 MTAGTVEQPLDLVRLSLDETIRVKMRGNRELRGKLHAFDQHLNMILGDVEETVITTDVDPETFEELLNTSKRLIPMLFVRGDCVILISPPLRTS 94
            M +  V++P+DLVRLSLDE I VKMRG+RELRGKLHA+DQHLNM+LGDVEE V T +VD ET+EE++ TSKR I MLFVRGD VILISPPLRT 
Sbjct:    1 MASTLVKEPIDLVRLSLDERIHVKMRGDRELRGKLHAYDQHLNMVLGDVEEVVTTVEVDEETYEEIIKTSKRQIEMLFVRGDGVILISPPLRTQ 94          
BLAST of Gchil8913.t1 vs. uniprot
Match: A0A7S2GP21_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GP21_9STRA)

HSP 1 Score: 141 bits (355), Expect = 8.350e-42
Identity = 67/91 (73.63%), Postives = 81/91 (89.01%), Query Frame = 0
Query:    4 GTVEQPLDLVRLSLDETIRVKMRGNRELRGKLHAFDQHLNMILGDVEETVITTDVDPETFEELLNTSKRLIPMLFVRGDCVILISPPLRTS 94
            G+VE+PLDL+RLSLDE I VK RG+RELRGKLHA+DQHLNM+LGDVEETV T ++D +T EE++ TSKR+I MLFVRGD VIL+SPPLRT+
Sbjct:   12 GSVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQELDEDTNEEIIRTSKRMIEMLFVRGDVVILVSPPLRTT 102          
BLAST of Gchil8913.t1 vs. uniprot
Match: T1JAU3_STRMM (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1JAU3_STRMM)

HSP 1 Score: 141 bits (355), Expect = 8.610e-42
Identity = 67/93 (72.04%), Postives = 81/93 (87.10%), Query Frame = 0
Query:    2 TAGTVEQPLDLVRLSLDETIRVKMRGNRELRGKLHAFDQHLNMILGDVEETVITTDVDPETFEELLNTSKRLIPMLFVRGDCVILISPPLRTS 94
            ++ TVE+PLDL+RLSLDE I VKMR  RELRG+LHA+DQHLNMILGDVEETV T ++D ET+EE+  T+KR IPMLFVRGD VIL+SPP+R+S
Sbjct:   10 SSNTVEEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEVYKTTKRNIPMLFVRGDGVILVSPPMRSS 102          
BLAST of Gchil8913.t1 vs. uniprot
Match: A0A1S3HGS7_LINUN (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HGS7_LINUN)

HSP 1 Score: 140 bits (353), Expect = 1.690e-41
Identity = 67/92 (72.83%), Postives = 80/92 (86.96%), Query Frame = 0
Query:    3 AGTVEQPLDLVRLSLDETIRVKMRGNRELRGKLHAFDQHLNMILGDVEETVITTDVDPETFEELLNTSKRLIPMLFVRGDCVILISPPLRTS 94
            A TVE+PLDL+RLSLDE I VKMR +RELRG+LHA+DQHLNMILG+VEETV T ++D ET+EE+  ++KR IPMLFVRGD VIL+SPPLRT 
Sbjct:   11 ANTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGEVEETVTTVEIDEETYEEIYKSTKRNIPMLFVRGDGVILVSPPLRTG 102          
BLAST of Gchil8913.t1 vs. uniprot
Match: W5N7V8_LEPOC (U6 snRNA-associated Sm-like protein LSm3 n=27 Tax=Euteleostomi TaxID=117571 RepID=W5N7V8_LEPOC)

HSP 1 Score: 140 bits (353), Expect = 1.690e-41
Identity = 66/93 (70.97%), Postives = 80/93 (86.02%), Query Frame = 0
Query:    2 TAGTVEQPLDLVRLSLDETIRVKMRGNRELRGKLHAFDQHLNMILGDVEETVITTDVDPETFEELLNTSKRLIPMLFVRGDCVILISPPLRTS 94
            TA TVE+PLDL+RLSLDE I VKMR +RELRG+LHA+DQHLNMILGDVEETV T ++D ET+EE+  ++KR IPMLFVRGD V+L++PPLR  
Sbjct:   10 TANTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102          
BLAST of Gchil8913.t1 vs. uniprot
Match: I3KZX4_ORENI (U6 snRNA-associated Sm-like protein LSm3 n=30 Tax=Percomorphaceae TaxID=1489872 RepID=I3KZX4_ORENI)

HSP 1 Score: 139 bits (351), Expect = 3.400e-41
Identity = 66/93 (70.97%), Postives = 79/93 (84.95%), Query Frame = 0
Query:    2 TAGTVEQPLDLVRLSLDETIRVKMRGNRELRGKLHAFDQHLNMILGDVEETVITTDVDPETFEELLNTSKRLIPMLFVRGDCVILISPPLRTS 94
            T  TVE+PLDL+RLSLDE I VKMR +RELRG+LHA+DQHLNMILGDVEETV T ++D ET+EEL  ++KR IPMLFVRGD V+L++PPLR  
Sbjct:   10 TTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEELYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102          
BLAST of Gchil8913.t1 vs. uniprot
Match: A0A667YX55_9TELE (U6 snRNA-associated Sm-like protein LSm3 n=36 Tax=Euacanthomorphacea TaxID=123369 RepID=A0A667YX55_9TELE)

HSP 1 Score: 139 bits (351), Expect = 3.400e-41
Identity = 66/93 (70.97%), Postives = 79/93 (84.95%), Query Frame = 0
Query:    2 TAGTVEQPLDLVRLSLDETIRVKMRGNRELRGKLHAFDQHLNMILGDVEETVITTDVDPETFEELLNTSKRLIPMLFVRGDCVILISPPLRTS 94
            T  TVE+PLDL+RLSLDE I VKMR +RELRG+LHA+DQHLNMILGDVEETV T ++D ET+EEL  ++KR IPMLFVRGD V+L++PPLR  
Sbjct:   10 TTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEELYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102          
BLAST of Gchil8913.t1 vs. uniprot
Match: D7FXS6_ECTSI (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXS6_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 3.680e-41
Identity = 65/92 (70.65%), Postives = 80/92 (86.96%), Query Frame = 0
Query:    3 AGTVEQPLDLVRLSLDETIRVKMRGNRELRGKLHAFDQHLNMILGDVEETVITTDVDPETFEELLNTSKRLIPMLFVRGDCVILISPPLRTS 94
            + +VE+PLDL+RLSLDE I VK RG RELRGKLH++DQHLNM+LGDVEETV T +VD +T+EE++ TSKR I MLFVRGD VIL+SPP+RT+
Sbjct:    2 SSSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRTT 93          
The following BLAST results are available for this feature:
BLAST of Gchil8913.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IK58_9FLOR1.230e-5593.62U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=G... [more]
B3RUU9_TRIAD5.360e-4374.19U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=T... [more]
A0A0M0JVC1_9EUKA4.620e-4273.40U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=C... [more]
A0A7S2GP21_9STRA8.350e-4273.63U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=D... [more]
T1JAU3_STRMM8.610e-4272.04U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=S... [more]
A0A1S3HGS7_LINUN1.690e-4172.83U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=L... [more]
W5N7V8_LEPOC1.690e-4170.97U6 snRNA-associated Sm-like protein LSm3 n=27 Tax=... [more]
I3KZX4_ORENI3.400e-4170.97U6 snRNA-associated Sm-like protein LSm3 n=30 Tax=... [more]
A0A667YX55_9TELE3.400e-4170.97U6 snRNA-associated Sm-like protein LSm3 n=36 Tax=... [more]
D7FXS6_ECTSI3.680e-4170.65U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=E... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 11..89
e-value: 8.4E-21
score: 85.1
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 14..89
e-value: 1.3E-19
score: 69.6
NoneNo IPR availableGENE3D2.30.30.100coord: 1..91
e-value: 7.1E-25
score: 88.9
NoneNo IPR availablePANTHERPTHR13110:SF8U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3coord: 2..93
IPR040002U6 snRNA-associated Sm-like protein Lsm3PANTHERPTHR13110U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3coord: 2..93
IPR034105Sm-like protein Lsm3CDDcd01730LSm3coord: 8..89
e-value: 7.22471E-48
score: 145.061
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 8..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:106524..106898 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8913.t1Gchil8913.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004370_pilon 106524..106898 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8913.t1 ID=Gchil8913.t1|Name=Gchil8913.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=95bp
MTAGTVEQPLDLVRLSLDETIRVKMRGNRELRGKLHAFDQHLNMILGDVE
ETVITTDVDPETFEELLNTSKRLIPMLFVRGDCVILISPPLRTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR040002Sm-like_LSM3
IPR034105Lsm3
IPR010920LSM_dom_sf