Gchil7366.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7366.t1
Unique NameGchil7366.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length431
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:709956..711248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD08358
PFAMsMFS_1
Max annot lvl2759|Eukaryota
KEGG koko:K12307
KEGG TC2.A.1
KEGG Pathwayko04142,map04142
Evalue1.56e-37
EggNOG OGsKOG2325@1|root,KOG2325@2759|Eukaryota
Descriptionmajor facilitator superfamily
COG categoryO
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7366Gchil7366Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 709956..711248 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7366.t1.start1Gchil7366.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 709956..709958 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7366.t1.CDS1Gchil7366.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 709956..711248 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7366.t1.exon1Gchil7366.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 709956..711248 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7366.t1.stop1Gchil7366.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 711246..711248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7366.t1Gchil7366.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 709956..711248 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7366.t1 ID=Gchil7366.t1|Name=Gchil7366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=431bp
MTLSASSRFTLNVTVFLPCVSFAIVLPSLWPYLQRLGAQESFLAYVVAIY
SVGEGLGAMLFGWLFSRLRATTVLQHASALGIIGSVLYLAAYDARDAHGR
ALVLVSRLLCGLWTGGAQAVQQAYLHRTLSAARITSATVELSTSACVGFV
AGPALALAFVPFGEAHVGRVHFDQFTLPAWFMLLSSVGCVLLYSFGLTER
RDCAARERDESVGLREGSHEGSALLPVSKAGVLTATTTTRTRRVMAPLVA
CNVAFFAHMFGFSLQETVTTPLIQTYYGWGVTTADALFTAASGGTLGALL
TLRALSRRGVSDGVLSAASLALGGAAWGTLAHTPLRRMTFAVGFALGTLA
FALGRATVMALATKVLPTRWQGGGQGVLLAVGAVARIVAPFAAVRVFDAA
LGARVVFGFTAALFVVAAVALLFALRVRPC*
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spliced messenger RNA

>Gchil7366.t1 ID=Gchil7366.t1|Name=Gchil7366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1293bp|location=Sequence derived from alignment at tig00000007_pilon:709956..711248+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCTTTCGGCGTCTTCGAGGTTCACGCTTAACGTGACGGTGTTTCT
GCCATGCGTGTCGTTCGCCATCGTGCTGCCGTCGCTGTGGCCATACCTGC
AGCGGCTCGGGGCGCAGGAGAGCTTCCTGGCGTACGTGGTGGCGATTTAC
TCTGTGGGCGAGGGGCTTGGCGCCATGCTGTTCGGCTGGCTGTTCTCGCG
GCTGCGCGCCACAACGGTGCTGCAGCACGCCAGCGCGCTGGGCATCATCG
GATCGGTGCTGTACCTGGCGGCGTACGACGCGCGCGACGCGCACGGACGC
GCGCTGGTGCTGGTATCGCGTCTGCTGTGCGGGCTGTGGACGGGCGGTGC
GCAGGCGGTGCAGCAGGCGTATCTACACCGAACGCTGAGCGCGGCGCGTA
TCACCAGCGCCACGGTGGAGTTGAGTACCAGCGCGTGTGTGGGCTTTGTG
GCCGGCCCCGCGCTAGCGCTGGCTTTTGTGCCGTTTGGTGAGGCGCATGT
TGGACGTGTGCACTTTGACCAGTTTACGTTGCCGGCGTGGTTCATGCTGC
TGAGCTCAGTGGGCTGCGTGCTGCTGTACAGTTTCGGACTGACGGAGCGG
CGCGACTGTGCGGCGCGTGAGCGCGATGAGAGCGTCGGACTGCGCGAGGG
CAGCCACGAGGGCAGCGCGTTGCTGCCAGTGTCGAAAGCAGGAGTTTTGA
CGGCGACGACAACGACAAGGACGAGAAGGGTGATGGCGCCGCTGGTGGCA
TGTAACGTGGCGTTCTTCGCGCACATGTTCGGCTTCTCGCTGCAGGAGAC
GGTGACAACGCCGTTGATACAAACGTACTACGGGTGGGGCGTGACGACAG
CCGACGCGCTGTTCACAGCGGCATCAGGCGGCACACTGGGCGCGCTACTG
ACGCTAcgcgcgctgtcgcgacgcggcgtgagcgacggtgtgctgagcgc
cgcgtcgctggcgctgggcggtgcggcgtggGGGACGCTAGCACACACAC
CGCTCCGACGCATGACGTTCGCAGTGGGCTTCGCGTTGGGCACGCTGGCG
TTCGCGCTCGGGCGCGCCACCGTCATGGCGCTGGCCACCAAGGTGCTGCC
GACGCGCTGGCAGGGCGGCGGGCAGGGCGTGTTACTTGCCGTGGGCGCCG
TCGCGCGCATCGTGGCGCCGTTTGCCGCCGTGCGCGTGTTCGATGCCGCG
CTTGGCGCGCGCGTCGTGTTTGGCTTCACCGCCGCGCTCTTCGTCGTGGC
CGCCGTCGCCTTGCTCTTCGCCCTTCGCGTGAGGCCGTGCTGA
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protein sequence of Gchil7366.t1

>Gchil7366.t1 ID=Gchil7366.t1|Name=Gchil7366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=431bp
MTLSASSRFTLNVTVFLPCVSFAIVLPSLWPYLQRLGAQESFLAYVVAIY
SVGEGLGAMLFGWLFSRLRATTVLQHASALGIIGSVLYLAAYDARDAHGR
ALVLVSRLLCGLWTGGAQAVQQAYLHRTLSAARITSATVELSTSACVGFV
AGPALALAFVPFGEAHVGRVHFDQFTLPAWFMLLSSVGCVLLYSFGLTER
RDCAARERDESVGLREGSHEGSALLPVSKAGVLTATTTTRTRRVMAPLVA
CNVAFFAHMFGFSLQETVTTPLIQTYYGWGVTTADALFTAASGGTLGALL
TLRALSRRGVSDGVLSAASLALGGAAWGTLAHTPLRRMTFAVGFALGTLA
FALGRATVMALATKVLPTRWQGGGQGVLLAVGAVARIVAPFAAVRVFDAA
LGARVVFGFTAALFVVAAVALLFALRVRPC*
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mRNA from alignment at tig00000007_pilon:709956..711248+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7366.t1 ID=Gchil7366.t1|Name=Gchil7366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1293bp|location=Sequence derived from alignment at tig00000007_pilon:709956..711248+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGCTTTCGGCGTCTTCGAGGTTCACGCTTAACGTGACGGTGTTTCT
GCCATGCGTGTCGTTCGCCATCGTGCTGCCGTCGCTGTGGCCATACCTGC
AGCGGCTCGGGGCGCAGGAGAGCTTCCTGGCGTACGTGGTGGCGATTTAC
TCTGTGGGCGAGGGGCTTGGCGCCATGCTGTTCGGCTGGCTGTTCTCGCG
GCTGCGCGCCACAACGGTGCTGCAGCACGCCAGCGCGCTGGGCATCATCG
GATCGGTGCTGTACCTGGCGGCGTACGACGCGCGCGACGCGCACGGACGC
GCGCTGGTGCTGGTATCGCGTCTGCTGTGCGGGCTGTGGACGGGCGGTGC
GCAGGCGGTGCAGCAGGCGTATCTACACCGAACGCTGAGCGCGGCGCGTA
TCACCAGCGCCACGGTGGAGTTGAGTACCAGCGCGTGTGTGGGCTTTGTG
GCCGGCCCCGCGCTAGCGCTGGCTTTTGTGCCGTTTGGTGAGGCGCATGT
TGGACGTGTGCACTTTGACCAGTTTACGTTGCCGGCGTGGTTCATGCTGC
TGAGCTCAGTGGGCTGCGTGCTGCTGTACAGTTTCGGACTGACGGAGCGG
CGCGACTGTGCGGCGCGTGAGCGCGATGAGAGCGTCGGACTGCGCGAGGG
CAGCCACGAGGGCAGCGCGTTGCTGCCAGTGTCGAAAGCAGGAGTTTTGA
CGGCGACGACAACGACAAGGACGAGAAGGGTGATGGCGCCGCTGGTGGCA
TGTAACGTGGCGTTCTTCGCGCACATGTTCGGCTTCTCGCTGCAGGAGAC
GGTGACAACGCCGTTGATACAAACGTACTACGGGTGGGGCGTGACGACAG
CCGACGCGCTGTTCACAGCGGCATCAGGCGGCACACTGGGCGCGCTACTG
ACGCTAcgcgcgctgtcgcgacgcggcgtgagcgacggtgtgctgagcgc
cgcgtcgctggcgctgggcggtgcggcgtggGGGACGCTAGCACACACAC
CGCTCCGACGCATGACGTTCGCAGTGGGCTTCGCGTTGGGCACGCTGGCG
TTCGCGCTCGGGCGCGCCACCGTCATGGCGCTGGCCACCAAGGTGCTGCC
GACGCGCTGGCAGGGCGGCGGGCAGGGCGTGTTACTTGCCGTGGGCGCCG
TCGCGCGCATCGTGGCGCCGTTTGCCGCCGTGCGCGTGTTCGATGCCGCG
CTTGGCGCGCGCGTCGTGTTTGGCTTCACCGCCGCGCTCTTCGTCGTGGC
CGCCGTCGCCTTGCTCTTCGCCCTTCGCGTGAGGCCGTGCTGA
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Coding sequence (CDS) from alignment at tig00000007_pilon:709956..711248+

>Gchil7366.t1 ID=Gchil7366.t1|Name=Gchil7366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1293bp|location=Sequence derived from alignment at tig00000007_pilon:709956..711248+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGCTTTCGGCGTCTTCGAGGTTCACGCTTAACGTGACGGTGTTTCT
GCCATGCGTGTCGTTCGCCATCGTGCTGCCGTCGCTGTGGCCATACCTGC
AGCGGCTCGGGGCGCAGGAGAGCTTCCTGGCGTACGTGGTGGCGATTTAC
TCTGTGGGCGAGGGGCTTGGCGCCATGCTGTTCGGCTGGCTGTTCTCGCG
GCTGCGCGCCACAACGGTGCTGCAGCACGCCAGCGCGCTGGGCATCATCG
GATCGGTGCTGTACCTGGCGGCGTACGACGCGCGCGACGCGCACGGACGC
GCGCTGGTGCTGGTATCGCGTCTGCTGTGCGGGCTGTGGACGGGCGGTGC
GCAGGCGGTGCAGCAGGCGTATCTACACCGAACGCTGAGCGCGGCGCGTA
TCACCAGCGCCACGGTGGAGTTGAGTACCAGCGCGTGTGTGGGCTTTGTG
GCCGGCCCCGCGCTAGCGCTGGCTTTTGTGCCGTTTGGTGAGGCGCATGT
TGGACGTGTGCACTTTGACCAGTTTACGTTGCCGGCGTGGTTCATGCTGC
TGAGCTCAGTGGGCTGCGTGCTGCTGTACAGTTTCGGACTGACGGAGCGG
CGCGACTGTGCGGCGCGTGAGCGCGATGAGAGCGTCGGACTGCGCGAGGG
CAGCCACGAGGGCAGCGCGTTGCTGCCAGTGTCGAAAGCAGGAGTTTTGA
CGGCGACGACAACGACAAGGACGAGAAGGGTGATGGCGCCGCTGGTGGCA
TGTAACGTGGCGTTCTTCGCGCACATGTTCGGCTTCTCGCTGCAGGAGAC
GGTGACAACGCCGTTGATACAAACGTACTACGGGTGGGGCGTGACGACAG
CCGACGCGCTGTTCACAGCGGCATCAGGCGGCACACTGGGCGCGCTACTG
ACGCTAcgcgcgctgtcgcgacgcggcgtgagcgacggtgtgctgagcgc
cgcgtcgctggcgctgggcggtgcggcgtggGGGACGCTAGCACACACAC
CGCTCCGACGCATGACGTTCGCAGTGGGCTTCGCGTTGGGCACGCTGGCG
TTCGCGCTCGGGCGCGCCACCGTCATGGCGCTGGCCACCAAGGTGCTGCC
GACGCGCTGGCAGGGCGGCGGGCAGGGCGTGTTACTTGCCGTGGGCGCCG
TCGCGCGCATCGTGGCGCCGTTTGCCGCCGTGCGCGTGTTCGATGCCGCG
CTTGGCGCGCGCGTCGTGTTTGGCTTCACCGCCGCGCTCTTCGTCGTGGC
CGCCGTCGCCTTGCTCTTCGCCCTTCGCGTGAGGCCGTGCTGA
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